Array 1 147592-148519 **** Predicted by CRISPRDetect 2.4 *** >NZ_JTPK01000007.1 Pseudomonas aeruginosa strain AZPAE14984 AZPAE14984_contig_7, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 147592 28 100.0 32 ............................ GCGAAGAAAAAGCCCGCCAGATAGGCCAGGAA 147652 28 100.0 32 ............................ TGGACGCGGGCGTCCTGGCTGATCAGGCTCCA 147712 28 100.0 32 ............................ CAGCGGGATCAGCGACCAGCCGATGGCCCGCA 147772 28 100.0 32 ............................ GTCGAGGCTGTCCAGCCGCAGCACGCTGCCGC 147832 28 100.0 32 ............................ ATGCCGCCGACCTGGTGCTGGTCGACACGGTG 147892 28 100.0 32 ............................ TTGACGACCAGCCAGAACCTGCGGCCGTTGGC 147952 28 100.0 32 ............................ GAGGAGTCCGAAGACTTGTCCGTGTCGTACCA 148012 28 100.0 32 ............................ AGGAACGTCCCGTCTCAGTTTGGAACGCCCAC 148072 28 100.0 32 ............................ TCGCGGCCCTCGGTCTGCCAGCGGAAGCCATG 148132 28 100.0 32 ............................ TTCATCAGGATGCCGCCAAGGGTCCGCATAAT 148192 28 100.0 32 ............................ ATGAAGGCCAGCAGGCCGAACACGATTGCGAT 148252 28 100.0 32 ............................ TCGAGCAGCGGCCCGAGGAGTCCGAAGACTTG 148312 28 100.0 32 ............................ TGGAGAAAAGCAATGCGAGTGGTGCGAGGCCA 148372 28 96.4 32 ....................T....... AGACAATCCGGACCTGCCGCCCAGGACGATCT 148432 28 100.0 32 ............................ TGCAGCGACTGCACCTTGGCTTGCTGCCGGTC 148492 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 16 28 99.8 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CATGTGTCCGCGTAGCGCCACCCTGTACGTGGACACCCATGCACTCCCCACGCACTTGTTCGACAACGCGAAAGTGCGCTTGAGGTCGGCAATCAACATCCTGGCCATGACCCGTTTGCTCGATGAGAAAGAAGAGCCCGGCGGCACCCTGGCCTACATCAACGGTGCGTTGCTGTCGCTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTCCCTGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGCGGCATCGCCCATCACAAGACCTTTCGCGCCCGAACGGCGAGGCTCACCGCCCGTCCCGGTCCTCGCGAAACGGCCTCCAATTGCCCGAAACTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGCAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCAGGAAAAACTCGGTATTTCCTTTTCCTTCAAATGGTTATAGGTTTTCGGGGCTA # Right flank : ACTCAAGAAAGAGCAGAACGGCCAGCCTGCGCCGTTCATTGCCGTGTAGTCCCGTAGGGCGAATGCCGCCATAGGCGGTATCCGCCCTACGGATCGGGTTCCTGGCATGCACGAAGTGAGGCTTGCCCTCCGAGTGGTGGGGCGGCAAACCCGCCCCGTCAGGAGGCCGAGCGGAATCGTTGCGGAGGGGGACGAGTGGCAGGATGCCGCGAGAGCCGGCTCGGTCCACGAAGGACCGTGGCGGCGTGCCGCCGGGAGCAACGATGCAGCGAGGGCACCCCAGCCGAGAAGCGGCTGGGGCCGGATGCCGGGGCGAGTCTTTTGGTTCCTTTTGGACGCTTGCAAAAGGAACTCGCCTGGGAAGGCGAAACAAGAGACCAAGGCAGGCACAAAGAACAGCTTGACCACCAAACATGACGCCCGCTCAAGCGCTAAGCAACAGCGTCCCCCCTCACTGCCGTGTAGCTAAGAAGTCGCGAGCGATATAGTCCCGTAGGGCG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [58.3-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 270180-271464 **** Predicted by CRISPRDetect 2.4 *** >NZ_JTPK01000002.1 Pseudomonas aeruginosa strain AZPAE14984 AZPAE14984_contig_2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 270180 28 100.0 32 ............................ AGTGGGCCGAAATCGGCCGATGAGTTCATCGG 270240 28 100.0 32 ............................ GCCCAGGACGATCTACTACTACGGCATCCCGG 270300 28 100.0 32 ............................ TGTCGCAGATCGATCGCGAGGACGCCGATGGC 270360 28 100.0 32 ............................ AGCAGCAGATCATCGACAACGCCCGCGCTTCT 270420 28 100.0 32 ............................ GAGAACGATTCCGTCTTGTTGGAGCTTTCTGT 270480 28 100.0 32 ............................ CGACGAGCAACTGCGCTTGCGCGTGCGTAACC 270540 28 100.0 32 ............................ GGAAGGCTGGCGCTCGAACGGATGTGTACAGG 270600 28 100.0 32 ............................ TCCGGATCACCAGGGCGACAGATGGCCACCTC 270660 28 100.0 33 ............................ CTCTGGCGGTAACCTTCCATGATCTGCGCAGCC 270721 28 100.0 32 ............................ TGCATGCACATCGGCGAACTGCTGACGTGCTT 270781 28 100.0 32 ............................ TGGCGCCGCCCGATTTCACGTAGCTGCTCGAT 270841 28 100.0 32 ............................ TGATATCCAGCTGCTCCAGGAACCACTGGCGG 270901 28 100.0 32 ............................ TGATTTCGAAGGCCGCGGGCGACTGATCCGGA 270961 28 100.0 32 ............................ TGGATCAAAGAACGCATTCTCGGCACGTCGAA 271021 28 100.0 32 ............................ TCCTTGCCGGGCGCGGCGGCGAGCAGTTCGCG 271081 28 100.0 28 ............................ GAGTGTGAGGCCGGGCAAACGGATTTGT 271137 28 100.0 32 ............................ TTGACGGCCAATGCCGGCTTCGACTTAGCTCG 271197 28 100.0 32 ............................ AGCCACTCGCGGGCCAGCTCGGGCGATAGCAC 271257 28 100.0 32 ............................ GTGTCGCCCAGCACCGTTCAGCGCTACTTCAT 271317 28 100.0 32 ............................ TCGATCCACACCCGCGAGGACGTGGCCACCGT 271377 28 100.0 32 ............................ AGCAATGGAAAGCAGCGATGTGACCCGACCCG 271437 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 22 28 100.0 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CGAAGTCGTCGAGGACGAACCAGGCCTGGTCGTCGATCAGCAGCGCGCGCAGCAATCGCTGCTGTCGGAAGAAGTAGTGCGGGGCAAGCTGGGTATGGCCGTGCATAGGAGAAATCCTTCTCTGAGCTGTCCGCTGCCTGGCTTCTGCCGGCGCGGCAGGGAGACAGGCCGCTCGTGGGTGTTGGGCCAGCAGGCTGTGGCCTGCCGGGAACCGAAGTCGCCGGCGAAAAAAGCCTACTGACAGCGCCTGTAGGACGGCAATGGCTAAGCCTTGTACGAAGTCTCCGATGGCACAAGCCCGCTGAACAGCTAGGCCGTTCTGAACATTACGCCGGCATGGAGAAAACAGGGGATGGACGCTATGCTTGGGAACCCTTTTTGGGGTGGATTTTTAAAGCCCTTTTAGATCAAAGGGTTAGAGATCGTTGCAAAAAGAGGGTTTTTCCGGGCTTTGGCGCTGGAGCCCTTGGAGCTTGGAAGGTTGATGGTTTTTTGGTCTA # Right flank : ATGCAGGTCATAGGCGTATTCGAAGGACAGGCTGTTCACTGCCGTATAGGCAGCTAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCACTGCCGTATAGGCAGCTAAAAAATGTCCCGAAGTTCATAAGCGGGCTTAGGGCGATTTCACTGCCACATAGGTCGTCAAGAAACGGCCAGCAGCCCTGAAGTATCGATTGATGCGGTTCGCTGTCGGCCGGGGGGCACCAGTCGAAACGAAGTCCCTTTCCATGGGACTTCGTTGCGGACATGCCGATAAGGCGCTGACGGGGTTCTTCAGAACCAGGGAACGAAACCTCCTTTGCTCAACCCGTAACAGGTGAATCCTCCTTCCTCTGCCGTCGCCTGCAACGGCCCGTGGCGGATGAAGAGACGGAAGTGCTGTCCGGTGCTCTGGCTGCGTAGCGTGACGAAGGGCAGGTCCAAGGTTCTCGCGACCGTATCGGGAATGCG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [48.3-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 281297-280188 **** Predicted by CRISPRDetect 2.4 *** >NZ_JTPK01000002.1 Pseudomonas aeruginosa strain AZPAE14984 AZPAE14984_contig_2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 281296 28 100.0 32 ............................ TGCGTAGATGCCGCGATCATAGCGCGCCCTAC 281236 28 100.0 32 ............................ TTCGGTACTTCTGAACCATACGTCGCCGCATA 281176 28 100.0 32 ............................ AGTCATCGATGAACGACGAGCCGGTCAGTGCC 281116 28 100.0 32 ............................ AGAAGCTGGAGCGACGGCTGGCGGCAATTCGT 281056 28 100.0 32 ............................ CCGGACGTTCACGCTGGTGGTGAGACCATCCG 280996 28 100.0 32 ............................ TGGCTGTCGCTGCGCTGCTGGCCGCTGTGTAT 280936 28 100.0 32 ............................ GGCTGGTCCCAGAGCGGGTCGACGGCACGGTC 280876 28 100.0 32 ............................ GAACCGCGCGTTCATTGCTGAAGGCCATCGTC 280816 28 100.0 33 ............................ ACATCAGCGCCGCGGTAGCCGATGCCGATATCT 280755 28 100.0 32 ............................ ACCATCCCCGGCCACGGGTTGCCCGACACCTG 280695 28 96.4 32 ........T................... GTTCCATCCGGGTAGGTCACGTCCACGTCGTA 280635 28 100.0 32 ............................ TGGAGAGTGACCCGCTCAAGACCGAGGCCGAG 280575 28 100.0 32 ............................ TGATGCCGGACATGGGACGTTTCGCGGGAACC 280515 28 100.0 32 ............................ CCGGACGCCCCTAATCTGGAGGGCTCCTGGCA 280455 28 100.0 32 ............................ TTTCCCCGCGAGGCATAGCAGGGATATCTTGT 280395 28 100.0 32 ............................ TACAAGCAGATCGGCGAGCTGAGCGGCAAGGA 280335 28 100.0 32 ............................ TCGTACTGGTCGAGATTTCCGATTCGGAAGCC 280275 28 100.0 32 ............................ TTCGACGCCGCTAGGGTTGCCGCATCGCCGTC 280215 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 19 28 99.8 32 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : ACTGCCGTGTAGGCAGCTAAGAAATTGATATGCCGGTAGAACGTCGGGCGAGACATGTTCACTGCCGTGTAGGCAGCTAAGAAATCGAACGCTGCTGAGCGCCGAACGCATAGATGGTTCACTGCCGTGTAGGCAGCTAAGAAAAGACCGAGGACGGCTCGAAAACTCGGATGATCGTTCACTGCCGTGTAGGCAGCTAAGAAATTCGACGGCCACGCCTCAGCCCGGCCCAGGCCGTTCACTGCCGTGTAGGCAGCTAAGAAATTATTGAAATCCTCAGCGGCCTGCACTTGCTCGTTCACTGCCGTGTAGGCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTGTAGGCAGCTAAGAAATGGGTGTCCAACATCGACGGGTCGAACTGCTC # Right flank : CTCGAACCCACCTCGGCCACAACAGCCGCCGGGTTCGCTGCCGTCTAGGCAGAACCACCCTCCCCATCCCGCTCCCAAACATCCGAATATAAAAGTTCCTACCCCGCCCGCCCGCCTCGCCCGTCCACGACAATGTGCCCCGCTTGGAAGCTCACGCTCCTCATACAGACGAAAACGGGGTAGCGGCAATCGGCCATATCCGCTAAACATTTGCCTTGGCGCAGAATTCGATAGATCCGATAGGGACAGGCCACGGTCAGCATGGACGACATTTCTCCCAGCGAACTGAAGACGATCCTTCACTCCAAGCGTGCCAACCTGTACTACCTGCAACACTGCCGGGTACTGGTCAACGGCGGGCGGGTCGAGTACGTCACCGACGAAGGCCGGCATTCGCACTACTGGAACATCCCCATCGCCAACACCACCAGCCTGTTGCTGGGCACGGGTACCTCCATTACTCAGGCAGCCATGCGCGAACTGGCCAGGGCCGGGGTATT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [31.7-38.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.24 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 3 281861-281533 **** Predicted by CRISPRDetect 2.4 *** >NZ_JTPK01000002.1 Pseudomonas aeruginosa strain AZPAE14984 AZPAE14984_contig_2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 281860 28 100.0 32 ............................ TGGCTGATCAGGCTCCAGAACGGATCGTAGAC 281800 28 100.0 32 ............................ TTGATATGCCGGTAGAACGTCGGGCGAGACAT 281740 28 100.0 32 ............................ TCGAACGCTGCTGAGCGCCGAACGCATAGATG 281680 28 100.0 32 ............................ AGACCGAGGACGGCTCGAAAACTCGGATGATC 281620 28 100.0 32 ............................ TTCGACGGCCACGCCTCAGCCCGGCCCAGGCC 281560 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 6 28 100.0 32 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : GACATGTGTCCGCGTAGCGCCACCCTGTACGTGGACACCCATGCACTCCCCACGCACTTGTTCGACAACGCGAAAGTGCGCTTGAGGTCGGCGATCAACATCCTGGCCATGACCCGTTTGCTCGATGAGAAAGAAGAGCCCGGCGGCACCCTGGCCTACATCAACGGTGCGTTGCTGTCGCTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTCCCTGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGCGGCATCGCCATCACAAGACCTTTCGCGTCCGAACGGCACGCTTGATCGCCGTCCCGGTCCTCGCGAAACGGCCGCCAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGCAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCGGGAAAAACTCGGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGGAGCTA # Right flank : TTATTGAAATCCTCAGCGGCCTGCACTTGCTCGTTCACTGCCGTGTAGGCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTGTAGGCAGCTAAGAAATGGGTGTCCAACATCGACGGGTCGAACTGCTCGTTCACTGCCGTGTAGGCAGCTAAGAAATGCGTAGATGCCGCGATCATAGCGCGCCCTACGTTCACTGCCGTGTAGGCAGCTAAGAAATTCGGTACTTCTGAACCATACGTCGCCGCATAGTTCACTGCCGTGTAGGCAGCTAAGAAAAGTCATCGATGAACGACGAGCCGGTCAGTGCCGTTCACTGCCGTGTAGGCAGCTAAGAAAAGAAGCTGGAGCGACGGCTGGCGGCAATTCGTGTTCACTGCCGTGTAGGCAGCTAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.72%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [38.3-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.14 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //