Array 1 303281-302519 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP013130.1 Lactiplantibacillus paraplantarum strain L-ZS9 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 303280 36 100.0 30 .................................... TCATGTCTTCACGAGTGCTCTTAAAGTTAT 303214 36 100.0 30 .................................... AATGGCATGCCAAATTGAGTTAACAACTCA 303148 36 100.0 30 .................................... ATGAAGGCAGATTTTGATTTTGGTCGCCAG 303082 36 100.0 30 .................................... TTTACAAAGTTGCTTGATAGGGTGCTTCAC 303016 36 100.0 30 .................................... CTTTTGCCATTACATACCACCACACCTCCG 302950 36 100.0 30 .................................... TATGCAACTCAATAGGAAAATGACCGACCT 302884 36 97.2 30 .............G...................... TTTTTGAGCTGAAGCTAACAATTAATATTA 302818 36 100.0 30 .................................... ATGAGTTCTTAGCATTGCACGGCGCCTACA 302752 36 100.0 30 .................................... ACGTTCTAATGGGTACCAAGTCGTTTATGA 302686 36 97.2 30 ...............C.................... AAGGAAGGTGCCAGATAGTGTCGAGAACGT 302620 36 97.2 30 ............T....................... ATTTTTTCCTGCACTCATCTATGAGCCAGG 302554 36 91.7 0 .C.............C...........A........ | ========== ====== ====== ====== ==================================== ============================== ================== 12 36 98.6 30 GTTTCAGAAGGACATTAAATCAATAAGGTCAAGACC # Left flank : TCGTACTATTGAGGTCAATCAGTATTTGACCAAGTTAGAACGGCTGATTAGCGAGTCACTAACAGACGAAGACCGTAATCAGATTCATGATTGCTTAAGTAAGCTGTATTCAGCAGTGGAGCAACAGCTTTTCCTGACAGATTTGCCACTAGAAGTAACCTATGACTTTGACATGAAGCACTTGCTAAAGTTTGCCAAGATTCATTTTGACGAGAAGTGGCAGACTAATCCGTATGATATAATTGAGTCAATATTAAAGGTTCATCAGGAGTGCGATATTGAATCTTGTGTGGTGCTGACCAATGTTACACATTATTTGACTGCATCACAAATGCATGAGCTTGAAGACAGTGTGGTAGCGACTGGACAATCGCTACTGTTATTGGAGTTCTGCAAGATGGATCAACGCGATTACTATGATGTTGGGTCGTTCAATTTTATTGATGAAGACTTTGTTGATTGGTACTAATGGAATGTTAAATTTCGATTAGAGATTAACG # Right flank : AGTAGCATGGTTAATTGCTTTATAAGTACTGTTTCAGAAGGACATTGATTAATATGATTATGCCTTAGCTATCGGTTGATAACTATGCTGTGGGCTTTAGAGAGAATGGTGAGCAGCAACTAGTTGCGAATAATATTTACAGGATAATTACTTTCACTTCGCAATATCCAATCCGTTGCCAATCCCCAAACTGGCGCATGACCTCACTATGAGTGACACAGGCGATACACTGGTAATGCTGATACTTATCAAAGACCGCTTGGACACGGTGGCGAATATCAGCACTAGTTTCGTAGTCCCAGACTTGAGAATCACTAGCTTGACCATGGTTGGCAGTATATTCATCGTAGGCGGCCATTGCTTGACGACCGCTTTTTATTTGCCAGCCTGATTTATCAGGATACCATTCATGAAGGCCTAACTCGACTTGTAATGGTCGGTTATGCCGTCGGATGATTTCAGTTGCGGTTTGCAGCGCTCGAGTATAGGGCGAGGCTAAG # Questionable array : NO Score: 3.19 # Score Detail : 1:0, 2:0, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAGAAGGACATTAAATCAATAAGGTCAAGACC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.89%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.20,-1.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.41 Confidence: LOW] # Array family : NA // Array 2 1344531-1344198 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP013130.1 Lactiplantibacillus paraplantarum strain L-ZS9 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 1344530 28 100.0 33 ............................ CTTGCTGGCTGAGGTTAAGAATCGTGTCGACAG 1344469 28 100.0 33 ............................ TGACGCCATACGCATCAGCCAGCGCCTTGTCCG 1344408 28 100.0 33 ............................ TACGAAGAAATAGAGACACAGTCTTAAACTCAC 1344347 28 100.0 33 ............................ TGTTGAAAGTCCCAGTCCCGTCGGTTGACTTTA 1344286 28 100.0 33 ............................ CGTGCACGAGAACCCGGATCTATTGGAGGCAGA 1344225 28 92.9 0 ...........A..............T. | ========== ====== ====== ====== ============================ ================================= ================== 6 28 98.8 33 CTGTTCCCCGTGTATGCGGGGGTGATCC # Left flank : TTACTGAAAATCGGCGCCCAATTGACCTTAAAAAACTAACTAAAAAACGCGGGACGTTTGCATGGGAATGGATGTACTCAAAGTCCTACTACCACACGGCCGACATGATTAGTCAGCACTACATCCTAGACACAATCGCGAATTTGCTTGATCACGACTTACTTAAAAGTACGCTATCGCAGACACTACAGCCGATTAACGCGCTTAACTTGCGGCAGGCCCATCAACTTATCGAGCAGCATCATATGATTGGTAAGGTAGTTATTGAAGGATGGGAATGATTTGACGTCATATTGCGGCTCAGGTAATCTACTTTAAATAGCCAAATACGTTGCTGTTTTCTGCTTCGTGGTGCTTACACATGATGTTGCACTCCAATGGAGAAATTATTGATATTCTTGGCATCATACCTTATAGTCAAAGTAGCGATGAAGTTGCAAGTTAACTAAAATTCGCTGTTTGGTTATTTTGGATTGTTGATTTAATGGGATTTGTTTAGT # Right flank : TAAGTTGTTAAACTTCCCACTCTGAAGCTACGTCGTCCCTAAAATAATTGCGGCCTTTCTCATTCATCGACCAGCATAAAAACTGAAAGCAATAATCCATCGAACCGCTACCTACCACCAATAAGACAAACCTATGATATCAAATTCGCTTACTCCAGCACCGATTGTCGTTAAAACTGCCAAACTTTCTTTTTAAGTTTCCAAAATATTAGTGCTATGATAATAGCATAATTTTGACTAAATTTTTTTAATCGGAAAGGACTTTGAAATTGGCATTTAAAACACCGTTGGCTGATCAAATGCGGCCACAATCACTGGATCAGATGGTCGGACAACAGGACTTGTTGAAGTCGGGCCAGCCACTGCGCCAGATTATTGATCAACACGTTAATATCCCCCTCATTCTGTGGGGGCCGCCGGGAACCGGCAAAACCAGTTTGGCACAAATCATTGCCAGCCAAGACGACTATCCCTTCGTAGCTTTTAATGCTTCGACTGAG # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGTTCCCCGTGTATGCGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGTAGGCGGGGGTGATCC with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.70,-10.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [58.3-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 1349417-1349147 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP013130.1 Lactiplantibacillus paraplantarum strain L-ZS9 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 1349416 28 100.0 33 ............................ TGTGATATCAAGGAACGCGCTAACGGCATCAGC 1349355 28 100.0 33 ............................ CACGTTGCCAGACCCACGGCTTATTATCGTTGA 1349294 28 100.0 33 ............................ TTACAATGTTTCATAAGTGTCATGGCTAATCGC 1349233 28 100.0 33 ............................ CTTCCTCTACCTCAACTCGCGGATTTCGTTTGT 1349172 26 82.1 0 ............T.C.....C.--.... | ========== ====== ====== ====== ============================ ================================= ================== 5 28 96.4 33 CTATTCCCCGTGCATACGGGGGTGATCC # Left flank : TAATAATTGCTGCTGGTACAAAAACAACACCACGAGCATCACTGACTCGAATCGCACTATCTTGACGATCAAGTTTGGCATGTTCCAAGTATAAGAAAGTTAATCGGTCATGAATTCGACTCAACTCTGACAATTCTGGCTTTTTTGCTCCAGATTTTTTCATTAGTACTGCACCTCCAAAGTGACTAGCATCAAGTTCACACAGTTGATTCTCAAAAAGTAATTTTCCATGGATAAAGAACATAATGAACTTTTAAATATAGGATAGGGATTGGCCAAACAAAAAAACGCTTACATTGCACTGTAACTCATATATTCAAAAAAACTTCTGAATATCTATATTTCATCAAAATCATTGCAGCTTCATAATTATAATAGCATAATTCATTTGCCAGAAAAAACACATATATGTATACTTATTGTCAGATATCAGATACAAAGTTAACTGAAAATTGCTCATCGGTGCTTCCGTATTGTTGATATGTCAGCATTTCTATAGT # Right flank : ATATTTTAAATAAAGAATCTGGTCAGCCTTTAATCGCACTGTTGGACGCAAAACTGGCTGAGCCTAGCGAACCATTTGCAACATATATTGAAGACGTTACCAGCTATAAAATTTATATTCCCGGTTTGTAAAATTAAGTTAGAAATTTAAAAAGCCATTTGTGATAGACTTTTGAGTGTCAAAATCAAAAGAAAGGCTGATCACAAATGACCTATACTCATCTTACCATAGACGAACTTGCCACAATTTATTCTTTTTGGAAACTCGGTAAAAAGGCTTATCTAGTGGCCCCAGCGCTCCATCGGAGTGCTGAAACTGTGTATCGTATTTATCGGTTTCTTGACGCTGGCGGTACGATTATTGATTACCAATGCCACTATCGAAAGCATAAACAACATTGTGGGCGTAAACCAATTCAACTACGCCCTGATGAACTGGCCTATATTCAAGCCAAAACTCAAGCTGGTTGGCAACCAGATACCATTATTAATCGCCAAGAA # Questionable array : NO Score: 2.88 # Score Detail : 1:0, 2:0, 3:0, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTATTCCCCGTGCATACGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-9.90,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.78 Confidence: MEDIUM] # Array family : NA // Array 4 1352204-1351688 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP013130.1 Lactiplantibacillus paraplantarum strain L-ZS9 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1352203 29 96.6 32 ............................C GGTACCCCGTTTTCACGAACGGCAATGTAGCG 1352142 29 100.0 32 ............................. ATTGTTCCGCGTTCCGGGTTCGGCCGTCTTAA 1352081 29 96.6 32 ............................C ATCATCACAACTCTGACACTTTTTCCATGCAA 1352020 29 100.0 32 ............................. AGAATTTCCACAAGAAAGGAATCTGCTTCTTG 1351959 29 96.6 32 ............................C AAATGATCGATCGTAACATTGCGGGAAAAGTT 1351898 29 100.0 32 ............................. TATAGCACAGTAAAAACAAGGGGTGGCAGTGA 1351837 29 100.0 32 ............................. TGCATGCAGCGGAACAGATCTAAGTCGCTCGT 1351776 28 93.1 32 ...............-............C CAGTCCACGCAAGCGGTTAGCGATTTTTTGCT 1351716 29 82.8 0 ...........T..C........A.C..A | ========== ====== ====== ====== ============================= ================================ ================== 9 29 96.2 32 CTATTCCCCGTGTATACGGGGGTGATCCT # Left flank : ATAATCATTGTACCGTGTAATCTCTGTTCACTGATCTTACTTTCATTGGATCTTTATTTTAAGTTTCTAGCTGTCTGTAAAATAATTTCAAAAATTAACTATATCTTATATTAACATTTAAATTTTAAAGATTCAGCTTCATACTTAATAAAATATGGCTATCTTTATCTAAACTATTTATGTGAAGAAAAATCGTTGAAACGGTAAATAATTTTGCATTATAGATGAGATATGTATTTTACAAGCCTAGCCCTTGTTGTCCACCACATAGTTATTGTTATTCATAAATTTATCGCTTAACATTTTTGTATCACACAATTTGCATGACCTAATAATTTCAATCAGTACTCACAGCAAGTGCAAATTCAATGCTATGAAGACCGCTTTGCTACAATGCCTCCTTGCTTGTATGGTTAATATTAATGGCAACAATCAAGCAAGTTGACTTAAATCTCTCAAGTACTGATTTAATATTGCTGCTATAATAGGCTTTGTTTAGT # Right flank : AACAAAGCCATATAAACAACAAATCACTTTCAAACAAATACAACTCCACAAATATAAAAGTGAATGCTTCACACGTCAGCACGCTACAAAGTCTCACTAAATATTTAAAGAACCGTCTTTAATCAACTTGTGGGCTAACGCCAGTGTTGCCTTAGCATCTGAAAGCGCGTTATGTGGCCTTAAGTTCACGATTTGATAAGCCGCTAACACCGTTGACAAGCGATAATTATCTAAGAAAATATTTGTGCGTTTCACAATGGGCATGAGATCTGTTGTCTGATTGGTCAATCCTTCTATGTCTTTTTCTATCAATGCTTGCTTCAAGAACATTTCGTCAAAATGAAAATTATAGCCTACGATTACACTGTTACCGATAAAGACCTTCATTTCACTTAACGCCATAACTATCGAAACACCTTCCTCATTAAGCATGTCACGTGTAATCCCAGTAAGTTCAACAATTTTTTGGGGCAACAATCGATCAATTTTTATTAGTCGGC # Questionable array : NO Score: 5.88 # Score Detail : 1:0, 2:3, 3:0, 4:0.81, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.81, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTATTCCCCGTGTATACGGGGGTGATCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTATTCCCCATGTATGTGGGGGTGATCCT with 89% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-9.90,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //