Array 1 8377-7801 **** Predicted by CRISPRDetect 2.4 *** >NZ_NHSM01000011.1 Rhodospirillum rubrum strain FR1-mutantIV scaffold0011, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================================== ================== 8376 37 100.0 37 ..................................... GCCTAAAGAGGCGCTTTTCTGCAGAACGGCTAAAGGC 8302 37 100.0 37 ..................................... AACATACGCCCCTGGAGATCATCTTCGACGCAGTCCC 8228 37 100.0 40 ..................................... GCGCTGCTCCACGGTCGGCTGATTGGCCGGCGGGGCGGGA 8151 37 100.0 53 ..................................... ACGCACTTCCGATAAAAGTCCGCCTCAACTGGATAGCCGGCCTCGGCCACCTC 8061 37 100.0 35 ..................................... CCGGACTTCTTTTCAACGATGGTTTCGGTCTTCTC 7989 37 100.0 40 ..................................... TATCAGCCATTGCGGCGCGCCTCGGCAATCTGGAGGTGGT 7912 37 100.0 38 ..................................... ACCGCGATTTCTTTCGCCTCTTCGAGCGAGGCGACGGG 7837 37 97.3 0 .......T............................. | ========== ====== ====== ====== ===================================== ===================================================== ================== 8 37 99.7 40 GTCTCCCGAGGCAGTAATGCCTCGGCCTCATTGAAAC # Left flank : TCGCAAATCACCCCCTATCCCCCCGCCCCCATTATGCTATTTTAGGGGGC # Right flank : TCCCCTGACCCGCGCCGCTATCTCCGCCTTGCCGGGATTAAAGGGGGCGGACCCCTTTTTATCTCTTTGATGCCTCGGCTGATTGAAGCAGCGATGCCACCGCCGGGAAGATCGGAACTGGTTACGCCGTTAAAAGCTCTCCTTTCCGGGATTTTTGACTCATGGGGGGTTCTCTCTAAAAGCGGCGCCCCCATTTGCTTCAAGGTATCCAGATCCCTGTCTGCCTTTAGCCCCACCAGATCGGTTTTGGAGAGACGCCCCGATGGCCCCCTCCGACACACCGCCTTCCGCGGAAGATCTCCCCTCCCAGGGCGAATTGGCCCTGTTCGCCCCACCGGCGACCGCCGAGGATGCCCTGGTGCCCGCCAGCATGGTCAACGCCTGGATCTATTGTCCCCGGCTGGCTGTTTTGGAATGGGGGCGTGGCGAAAAGGCCCGCAGTGTGGATCTCATCGCCGGCCTGCGCGCCCATCAAGCCACGGAAAGCGGCCCGACTCCCG # Questionable array : NO Score: 9.17 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:-0.07, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCCCGAGGCAGTAATGCCTCGGCCTCATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [8,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-14.80,-15.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [35.0-35.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : NA // Array 1 40491-40826 **** Predicted by CRISPRDetect 2.4 *** >NZ_NHSM01000149.1 Rhodospirillum rubrum strain FR1-mutantIV scaffold0149, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================= ================== 40491 37 100.0 36 ..................................... AGGTGTTACAGGAGTCTCAACGACTGGGGTTGTGGG 40564 37 100.0 36 ..................................... TTCGTATTCCCATAGATCTTACCCGTGGTCGTAAGG 40637 37 100.0 41 ..................................... CGGACGGGCAGCTTCAGATACTTCAGGGCACTCTCGTACCC 40715 37 100.0 38 ..................................... ACCGCGATTTCTTTCGCCTCTTCGAGCGAGGCGACGGG 40790 37 94.6 0 .......T...............A............. | ========== ====== ====== ====== ===================================== ========================================= ================== 5 37 98.9 38 GTCTCCCGAGGCAGTAATGCCTCGGCCTCATTGAAAC # Left flank : GATCCGGCCTGTATTGGCGATCGGCGACAGCCTTTCATCCGCCCCGCCACCCCAAGCGCGGCGATGATCCCCAAGCCTTCCTAACCGCCTTGATCGCCAAGGAGTGCTTGGCCCGCGCCCTGCCCCTCCCCGCCATCAAGATCATCGCGCTGCGCCGCGGCGCCCGCGATGGTCTGGCCGCCCTGGCCCATTTGACCTTCCCCAAGCCGGTAAGCGGACCGATCCTGCTTGGCCGGGACGCCCACCGGGGGGGCGGTGTCTTCCTCCTTGGGGCGGTGCGGCGGCCCCTGGCCGAAGAGGGCCTCCCCTCGCGCGAGGGGTCCGCTGACTCAAACGACTCGCGGAGCGCTCGCAATGAACCAATCATTTGATTTTCCCGTTCTTTTTGACACCGCCCCTCGAATGGCCGGCTTGAGGACAGCCCTTTTCAAGCCATTTTTTTCGACCCCTCGCAAATCACCCCCTATCCCCCCGCCCCCATTATGCTATTTTAGGGGGCC # Right flank : TCCTCTGACCCGCGCCGCTGTCTCCGCCTTGCCGAGATTAAAGGGGTTAAACCCCTTTTTATCTCTTTGATGCCTCGGCTGATTGAAGCAGCGCTGCCACAGCCGGGAAGATCGGAACTGGTTACGCCGTTAAAAGCTCTCCTTTCCGGGATTTTTTACTCATGGGGGGTTCTCTCTAAAAGCGGCGTCCCCATTTGCTTCAAGGTATCCAGATCCCTGTCTGCCTTTAACCCCACCAGATCGGTTTTGGAGAGACGCCCCGATGGCCCCCTCCGACACACCGCCTTCTGCGGAAGATCTCCCCTCCCAGGGCGAATTGGCCCTGTTCGCCCCACCGGCGACCGCCGAGGATGCCCTGGTGCCCGCCAGCATGGTCAACGCCTGGATCTATTGTCCCCGGCTGGCTGTTTTGGAAT # Questionable array : NO Score: 9.01 # Score Detail : 1:0, 2:3, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCCCGAGGCAGTAATGCCTCGGCCTCATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [8,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-15.10,-14.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [40.0-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : NA // Array 1 12533-14077 **** Predicted by CRISPRDetect 2.4 *** >NZ_NHSM01000150.1 Rhodospirillum rubrum strain FR1-mutantIV scaffold0150, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =========================================== ================== 12533 37 100.0 38 ..................................... GCGCCGGTGAAGTTGGCGCCGGTGCAATCGGCGCTCCT 12608 37 100.0 38 ..................................... ACGCTGGCACTATACGGTGCGTGGTCCGAGAGCTCCGA 12683 37 100.0 38 ..................................... GTCCTCATCGAAGTCCTCATCCTCGACCGGGGCACCCC 12758 37 100.0 38 ..................................... TCGAGGGATCCCATATCCAAAGCGCCGAACGAGTTGAA 12833 37 100.0 36 ..................................... AAGCGTTGTCTGTCGGCAGGGCGCCGAGGACGGCAC 12906 37 100.0 39 ..................................... AAGCACTTTCGTAAGGTTCACTGGGGTTACGGCGGCAAT 12982 37 100.0 39 ..................................... GCTTCGATCGCACGGATCCGATCCTTCAATCCAGTCCGG 13058 37 100.0 38 ..................................... CACATGGCGTGAACCTTGCGCGCCAGCGGATTGGCCGC 13133 37 100.0 40 ..................................... CCGTCCTGGAAGAAGACAACCCATTGCGAGGGGGTCTCAT 13210 37 100.0 43 ..................................... TCGAGCGGCGGGAATTGGCCCTCTTGGATGGGGGATTTTTCCA 13290 37 100.0 35 ..................................... TTGTTCTTGTCTTCATCCGAGGGTTTGTTTGTCTT 13362 37 94.6 38 .........C...........T............... AGGGTGGTGAGGAATTCATAGCGGCTGTGCGTGGCCTT 13437 37 94.6 37 .........C...........T............... CAACAGAAACGGTATCAGCCATGGTAACTACTCCCAC 13511 37 94.6 38 .........C...........T............... ATGGCTAATGAATGTATTGAACGTTTATTATCCAACAA 13586 37 94.6 37 .........C...........T............... TCGGAGGTAACGCCATTGTCGGCGCCGTCGTCTTCGG 13660 37 94.6 38 .........C...........T............... CTCCCAAGCCGCCACCAGGGCGGCTTTGGCGCGGGCGG 13735 37 94.6 40 .........C...........T............... CCCGGGGGGTGTCGCGGTCTTAGTATTCCAGGATCCGCGC 13812 37 94.6 39 .........C...........T............... GGTGTCGGCGACCATGCGCTGATCATTGCCGGTCGGAAT 13888 37 94.6 40 .........C...........T............... GAGGGAGAGCCCACCGTACTGAAAAGCGAGGTGGCGCATC 13965 37 94.6 39 .........C...........T............... TCGGCGGGCAACTCGAAGCAAAGGGCGCGGGTGGTGGTT 14041 37 94.6 0 .........C...........T............... | ========== ====== ====== ====== ===================================== =========================================== ================== 21 37 97.4 38 CTCGCAGCCTATGCCCCGCCACCGAGGGGACTGAAAC # Left flank : GCGGCCGGGCCATCCTCATTCCCTATGAGGTGACCTGGAAGCACGAAATGGTCGAGCTGCCAGCGGACGCGCCGAAAGCCTTCGCCACCTTGAACTCGCTCCGCGAGCTGCCGGCCTTCCTGGAAAACGGCGAGAACCGCCGCTAGCCCCCCCGATCCCCCACCCGCGCGGCGGCCGCCCAGGGAAAAGGGATTTTAAAAGGGGTCCGCCCCCTTTTCCTTCTTCTTTTTCCTTCATGTCCCGGCGTGCTCCCGGTGAAAAGCCGGTTCCCGAACCGTCGATCCTCGTTTAAACTGCCCCTACCGCGTGAGTCGTAACCTCAAAAACCACCCAAAAACCCCCTAGGTTACGACTCAAGCCAACTGTTTGAAATCGTTTAGAAAATGTGAAAACCTTCTGCTTAAGAAGGGTCATTTCGCCCCCAAAAAACACCCCGCCCGCCGAGGTTACGACAAACCACCTTGTAACCACTTGAATAATAAAGCCTTTTAGAACCGGCT # Right flank : CTACTCTTCGCCTCCTTCGGGCTCACGGCTCGCGCCGCGACTCGCGCTAAAAAGGGGTCTGACCCCTTTTATCCTTTTTCTTTTATCCTCTTTTATCCCCTTAGGCACCGCGACCGATCAGAAAGGCGTTGCGCCGGGGCGCAACGCCTTGAGGGATCGCAAGATAATCCCCGCAGATCTTGGCGCCCGGGGGAAGCGCGGCCGGTCAGGCGCTTCGGCGCAGGCTGACCAGACCGAGGGTGGCATAGGCGAGGATGGTGGAGCCCGCCAGACCGATGCCCCAAATCAGCCCGACCAGCAACCAATCCACCGGCCCCCCGGCATCGGAGAAGCCCGATACGGTAACCCGGGCGGCCAGGACCAGGGCCAGGACGCCCCCGGCAAGGCCGATGAGTTCCGAGCGGACCAGCCGGCGGCTGTTGATCTTTCCCTCCTTGAGAAAAACGAACAAGGCGCCGCCCAGCCCAAGCAGGGCGAGGGCCAGCAGGATCCACAACACA # Questionable array : NO Score: 5.98 # Score Detail : 1:0, 2:3, 3:0, 4:0.87, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.85, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTCGCAGCCTATGCCCCGCCACCGAGGGGACTGAAAC # Alternate repeat : CTCGCAGCCCATGCCCCGCCATCGAGGGGACTGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-8.00,-8.20] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [56.7-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0 Confidence: HIGH] # Array family : NA // Array 1 4246-5121 **** Predicted by CRISPRDetect 2.4 *** >NZ_NHSM01000206.1 Rhodospirillum rubrum strain FR1-mutantIV scaffold0206, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =========================================== ================== 4246 37 100.0 43 ..................................... TCGAAATCACCTTCGTCATCCTCGACCGGGATATCCCGGACAC 4326 37 100.0 39 ..................................... GACCACGATCAAGCGCCCCAAGATGTGCTCGCAGACCAC 4402 37 100.0 38 ..................................... AACGCGGGGCCGTGCAGGCCGTTCGTCTCGGCGTCCAA 4477 37 100.0 38 ..................................... TTCTATCCTTGGATTGAGTGGGGCGAGAAACCCGCCCG 4552 37 100.0 40 ..................................... CTGTAGGAGGCATAAAACTCTTCTCGAGTCAGGGTGTCGA 4629 37 100.0 38 ..................................... CAAGTCAACGGCGAAAGCTCGCGCAAGTGTTTGACCAA 4704 37 100.0 39 ..................................... CTTCCTCGGGCTCCTCGGGGTCTTCGTCGAAGCCATCAA 4780 37 100.0 39 ..................................... ATTCTTCGGGTGAGGGATCCCAGGTGCCAAGAAGCTCGA 4856 37 100.0 39 ..................................... CCCGAACCCCAGCTTAACGCGGCCGCTCTCGGCATTGTA 4932 37 100.0 41 ..................................... TTGTCATACCCGGACCGAGCCGCCACGATTTTACGGGTGGC 5010 37 91.9 38 ..........A........C.C............... ATCAGACCGCGTTGGTGATCAGGAAGCCGGCGCGATTG 5085 37 91.9 0 ..........A........C...A............. | ========== ====== ====== ====== ===================================== =========================================== ================== 12 37 98.7 39 CTCGCAGCCCTTGCCCCGCTATCGAGGGGACTGAAAC # Left flank : CCCGGCACCGTGCTCGCCACCGCCGACCGGGTGACCCTGGGCAGCCTGGGCGCTTTCGCCGTCGTCGCCATGGGGTTGCTGTCGTGGTGGATGGGCCGGGCCATCGCCCGCACCCCCTCGCCGCGCTAAAGCGCCGAGCAGGGAATACCGGTTTTCCGCGGTGTCGCCGCTCTCCTCTGATGACACCTCTTATACGGATACGATGCGTTCCCTGAAGTCCATCCATGCCCACCGCGCCAACCTGAGCGAACGCGTTGAAAAGCCGGTTCCCGAACCGAGGATCCTCGTTTAAACTGCCCTTATAGCGTGAGTCGTAACCTCAAAAACCGCCCAAAACCCCCTTAGGTTACGACTCAGGCCAACTGTTTGAAATCGTTGATAAAATGTGAAAACCTTCTGCTTAAGAAGGGTCTTTTCGCCCCTAAAAAATACCCCACCCGCCGAGGTTACGACAAACCACCCTGTAACCCTTTGAATAATAAGGCCGTTTAGAACCGGCT # Right flank : CCAGCCTGTGAGGCCGTCCGATACAGAGAGTCTCGATCAAAAGTTCTGCGTTAAAGGGGTTCCCTTTAACGCGGCGTGATCTACCGCCGGGGCAGGCTCTCGGCGAAGCGGGCGCTCAGCTTGGTGTAATGGCCACCGTGATAGCGGAAGGACCCCAGGAAATGCACCAGGGCGACCTCTCCGGGGGCTTGTCTGCCGAGGTACGAGATATAGCGCCCATAGGGCAGCATCAGCGCCTCGGGAAAATTGGCGATGACGAAGTTCGAGCAGACCTGCTCGCTTCCCCAGTCGCGCCATTTCGCCCCCAGCCTCGCCTCCATCAACGCCGAAAGCCGTTCGGCCAGGGCGCGCCCCGCCGTGTTGCGGGGAAATCCGGCGAACCCCGAGCAGCCCCGGCCATAGCGATGGTCGGCCAGCTCGGGGCAGTCCCCCATGGCGATCTGGGCGTGGGTTTGAACGTGGTCGGTGCGATTGGCCCGTGACAGGGCGGCGATCTCGGC # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTCGCAGCCCTTGCCCCGCTATCGAGGGGACTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.00,-11.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [51.7-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.37 Confidence: MEDIUM] # Array family : NA // Array 1 21306-21921 **** Predicted by CRISPRDetect 2.4 *** >NZ_NHSM01000028.1 Rhodospirillum rubrum strain FR1-mutantIV scaffold0028, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =================================================================================== ================== 21306 36 100.0 30 .................................... CGTGGCGGCGACCAATGCGGCATTCGAGCT 21372 36 100.0 30 .................................... GGCTGGCGCTTTCGACCGGCTACGTCATGG 21438 36 100.0 30 .................................... CGGGTAGATAGGCGCAATCGGTTCTCGGAT 21504 36 100.0 30 .................................... GGCGAGCCGTGCGCACCGGTCCTCCCCCCA 21570 36 100.0 30 .................................... CATGAAAGGAATGCCCAGATGAGCAAATCC 21636 36 100.0 30 .................................... TGATCCAGTCATCGCCCATCCCGGCCTGGG 21702 36 100.0 30 .................................... GTCACCAGGGCGATGCCGATCACCCGCACG 21768 36 94.4 83 ..........................A......C.. CCGCCCATTCCAATCCTTGACCCTCAACGCCTCAAGGCGGGTGATGCGGCTAGGAAAAATAGCGGTTTGGAAGCGGAGGCAAC T [21801] 21887 35 91.7 0 G.....T.......-..................... | ========== ====== ====== ====== ==================================== =================================================================================== ================== 9 36 98.5 37 ACTCTACCATGGCGGTGTGGGACGGGGCCATGGAAC # Left flank : ATATCCTGATATTGAAGCAAATCGTCGTCGCGATCTGCTTCAGATCGCTCGGGATTTGCTTTGGCTCTGCCCGAGCGGATCGGGAGCCTCAAGGATGCCGGACGGGTGGCGGAAGATGGGAGTGCTGGTGTTTTATGATCTGCCGGTGGTCAGCCCGGAGCAACGGCTGGCGGCGGTGCGGTTTCACAAATTCCTGCTCGCCGATGGCTTCGAGCGCATGCACTACTCGATCTATGCCCGCTATTGCGGATCGATGGAACGCGCCGCCACCTATGAACGACGGGTGGAACAGGCCTTGCCCGCCGTCGGGCATGTCAATTTATTGAAATTGACCGATCGCCAGATGGTCGGCATGCGCAAATGGATCCGTGGCAACTACCGAGCCCCGGAAAATGCCGAGTTCGTGCCCCCAGCCCAGTATCAACTCTTCTGAACGTCCTGGCCCCTGCACGAAAAAACGCCCGAATCCTCAAGAAAATCAAGAGGATCCGGGCGGTACA # Right flank : CAACATAACAAGCATCGTCTCCGCTACCTCTTGATAATCTTAAAATAAAGGGAAAATCAAGATCTATGTCGCTTTTTTGGAAAGTCTGAGTCGGCCCAGGGCGGTGCATGAGGTTGTTCGGATTTTTTCCTTTCGGATGCCCTCGGCACTTTGAACGCAATACCCCTGGTCGCCATTCAAGTTGATGTTTGGACAAGACAGTTGTGCATAAAGAGCCGTCGCTTTTCCGGTGGCTAATCGGGCGGGCCACAGGGCGAGGCGGCCATCCACGGCCATCTTTTTCACCAGGAACAGCCTGTCCCCGCTCTCCAGGGGCCAATAGACCAGATCGCCCCGGCGCAGGCGCATCACCAAACGGGCGTTCTCCGGCGGCGGCGGCGGGGCGGGTTGGGTCCTGTCGAAGCGAGTCAGAACCCGGTGGGTCCACCGGGGCCGGCCCTTCACCTGGATTTCCCACACCTCGTAAACGGCATTGCCCATGGTGCGCACGGCGGCTTTCG # Questionable array : NO Score: 5.69 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:-0.49, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ACTCTACCATGGCGGTGTGGGACGGGGCCATGGAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.70,-4.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [45.0-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.15,0.27 Confidence: MEDIUM] # Array family : NA // Array 1 6518-6251 **** Predicted by CRISPRDetect 2.4 *** >NZ_NHSM01000076.1 Rhodospirillum rubrum strain FR1-mutantIV scaffold0076, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================= ================== 6517 37 100.0 38 ..................................... CCCTTCCAGGAAAGCCTGGGCGCGAGCGCCCCGGACGT 6442 37 100.0 41 ..................................... CCGCGAAAGTCGGGATCATCGGGGCGAAGAACAAGCTGGTC 6364 37 100.0 40 ..................................... GTGTTCCAGAGGCCGGAGGGTGGAGGGAGCTATCCCAATC 6287 37 97.3 0 ..................T.................. | ========== ====== ====== ====== ===================================== ========================================= ================== 4 37 99.3 40 CTCGCACCCTATGCCCCGCCATCGAGGGGACTGAAAC # Left flank : GAAACAGCCGATGAACCGCTATGTGATCTGTTATGACATCGTCGATGACAAACGCCGGCTCAAAGTCGCCAAATGCCTTGATAGCTATGGCAGCCGGGTTCAGTTCAGCGTGTTCGAAGTGCTGGTGTCCAAGCCGCTGATGACCCGCATGGTCCGCGAACTGGGCGCGCTGATCAACGCCAAAACCGATCGCATCAGTATTTACCCCCAATGCGCGACCTGCGACGCCCGCCGCACCGATCTGGGCGCCACCGTTGAAAAGCCGGTTCACGAACCGTGGATCATCGTTTAAACTGCCCCCATTGCGTGAGTCGTAACCTCAAAAACCACCCAAAAACCCCTTAGGTTACGACTCAGGCCAACTGTTTGAAATCGTTTATAAAATGTGAAAACCTTCTGCTTAAGAAGGGTCTTTTCGCCCCCTAAAAACACCCCGTCCGCCGAGGTTACGACAAACCACCCTGTAACCCATTGAATAATAGAGCCTTTTAGAACCGGCT # Right flank : TGGATTACTCCCGAACGGCAAGGGGATGTAAAAAAGGGGTCAGACCCCCTTTCTCTCCTTTGACCCCCTTTCTCTCCTTTCTCGCCTTTCTCTCTGGGGTGTGGAACGCCTTGCCCAGGGCGGGCCGGGAAACACTCCCCCCTTGTCAACCAAATCGGGTGGACGGCATACTGGCTGATGCTTGGCTTTGATCCCATTGATTGGATGGCGGTTCCCGGCTCGTTGGCGAACGACTTGCAACGGCGGTTGCGCGGGGTTGTGGTGTCGCCGCGCCGGCTGTCTTTGCTGACGCCGGGCGTGAACGCCACCATTCCCATGCTGCGCGGGGTCTGGGGATGCGCCCTGCATGACCGCGACCGGGAAACCTATGCCACGGTGTTCGAGGGTCTGGGGCCCGATGGCGATCCCAGTGACCGGCGGCCGCTTTATGTGTTGCGCCCAGCCCCGGCCGACCCGCGCGACGCCCCGGCCCTGGAGTGGATCAGCCTGGGCGGCGCCCT # Questionable array : NO Score: 5.82 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTCGCACCCTATGCCCCGCCATCGAGGGGACTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-8.10,-8.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [48.3-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 1 64727-67014 **** Predicted by CRISPRDetect 2.4 *** >NZ_NHSM01000022.1 Rhodospirillum rubrum strain FR1-mutantIV scaffold0022, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================== ================== 64727 29 96.6 32 ............................T TACTACACCGAGCCCCGCATTATCCGGGTGCG 64788 29 100.0 32 ............................. GCGCGGGCATCATCTGCCCCGCACACCATAGC 64849 29 96.6 32 ............................G TTTGGCGAATACCCCATGGTCCAAGGCGCTAT 64910 29 100.0 32 ............................. GACGCCGCGAACGTCCTGACCGAAGCCCTGGC 64971 29 100.0 32 ............................. TGGCGGCGGCGTTTCGCGCTGAAGGCGCCCTG 65032 29 100.0 32 ............................. GCCGCCGGGACCGGGGCGCAGGCGATCTACAA 65093 29 100.0 32 ............................. CTCGGCAATGCGAGGGATCACGTCGCCGGAGC 65154 29 100.0 32 ............................. CTACTACGCCCGACAGGCGATATTGGATAAGC 65215 29 100.0 32 ............................. TTAATCCCCGATCTCAGGGGGAGGCTGGAATG 65276 29 100.0 32 ............................. AACAGACGACAGCGGGATCATCCTGGCATCGA 65337 29 100.0 32 ............................. TGCGTAAGCTGCGTTCCTTGCTGGATTAGGGC 65398 29 100.0 32 ............................. AAGCCCGGGGTTTATGGAGAGCATACCATGAC 65459 29 100.0 32 ............................. CCCGGACGCCTTTTGGTGGACGACGCCGCAAA 65520 29 100.0 32 ............................. ATGACTGCATGACCGAGGCGCTTTATGCCGAG 65581 29 100.0 32 ............................. TCTAGGCCCCGGTACGCAGTGCTCACGCGTAC 65642 29 100.0 32 ............................. ACCACGGGGAATTCCCGATGCTCCGCCTCCTG 65703 29 100.0 32 ............................. GTGCGCGACAACATGGGGTGGGTGCGCGATCA 65764 29 100.0 32 ............................. ACGATCGGGTCTTTGCGCCAGTTCGGCGACCA 65825 29 96.6 32 ............................A TGTTCCGTCTGGCTCCAAGGTGTCGTAATCGC 65886 29 100.0 32 ............................. TTGCCGCGAATGCGGCGCCCCCCTGGCGGTCG 65947 29 100.0 32 ............................. GTGCTCTCCGCCATACCTTGGGTGGAGCAGAA 66008 29 100.0 32 ............................. GCCGTGCTCGATCGATGCGATCTCGGCAGTGA 66069 29 93.1 32 .........A...C............... TGCCGACCGCCTGAGGCGCGAGGCCGAGGTGA 66130 29 93.1 32 .........A...C............... ACCGCGCGGTCCTCCCTTCATTATCGATTTCA 66191 29 93.1 32 .........A...C............... CATGTCGCCCGCACAGCGGGAACTGGCCGCCC 66252 29 93.1 34 .........A...C............... GAGCACACCGAGGCGCTTGCCCGGGCGGCTGCGG 66315 29 93.1 32 .........A...C............... AGCCTTCTCATCTGGGCGGCAAAGCATGTTGC 66376 29 89.7 32 .........A...C..............G TGATGAATCTCCAGGATCGCCTTATTGCTCAG 66437 29 93.1 32 .........A...C............... GTGTGTGAACGGACAAAACACCGCCCTCTGCT 66498 29 93.1 32 .........A...C............... CTTCAAAAACCCGCGATTTCCGCCGCGATTGC 66559 29 93.1 32 .........A...C............... CGGCCAGGACAGCACATAAGCGGCCCCGCCGC 66620 29 93.1 32 .........A...C............... GTTGCTGTTCGTCAGGATCGCGCCGAGAAGCG 66681 29 93.1 32 .........A...C............... CCGCCCTTGTTCTGATAGGCGGACCAGATCGT 66742 29 93.1 32 .........A...C............... AGCCCCCGGAATTCCCGCTCACTTGCGGTGCC 66803 29 93.1 32 .........A...C............... GCCGTAATGCCGCAAGACCCCGGCTTGGCGCG 66864 29 100.0 32 ............................. ATCCAATCATCTGGCTCGCGGTTCGAGCCGCT 66925 29 100.0 32 ............................. TCGGCGGGAAGTTCATTTCGTGCATTGCGATT 66986 29 96.6 0 ............................A | ========== ====== ====== ====== ============================= ================================== ================== 38 29 97.2 32 GGTTCCCCCGCACTCGTGGGGATAGACCC # Left flank : GAGCGACTCACCCGCCAGCGGGCGGCCAAGCTGTTTCGCCAACGCGGCGTTATTCCCTCGATGATCGACAGGATCAAAACGCTTCTGGGTCTTGGGGCCGAGACCGAGGAGATCGCTTGATGCCGATGGTTGTGGTCGTTACCCGCAATGTCGAGGCGCGCTACCGGGGGTTCCTGGGCTCGGCCATGCTTGAACTGGCGCCCGGCGTCTATGCGCAGCCCCGGATGAACGCCGGCGTCCGCCAGCGGATTTGGGAGGTGCTTGCCCAATGGTATGGGCACCTGCGCCAGGGCAGCATCGTTATGACCTGGGCCGACAGCCTAGCCAATGGCGGCCTTGGCCTCGCCACCCTGGGTGAACCCCCCAAGGATATCGTTGCCCACGACGGCATCCTGCTCGTCCGCCGGGCCCTGCCGGCAATCGAAAAGAAGCCCAGTGACTGACTTTTTTCCTTCTGCTCTTTGACAGTGTGTATATTTTAGAAGGCGTTAAAGGTCAGA # Right flank : AGCATTCGGACCACTCTGATAGACAGCCAATCGAGCCGCAGGGCGTTGCCGCAAGTTATCCAGTTTTCCTTGTTCAGTGGCAGGAACTCGGCCAGCGCCAGCTTCTGTCCGCGGTACAGCACGTCCGCCTGGTATTCGGCGATGATGAGGGCGAGGCGCGCGATCTCGGCCTCGATGGCCCGCATCTCCTTGTAAGCGATGACAAGGAAATCGTTCCATCTACTCGCTGTCATTTCAGCGCCTGCCGCATCATTCGCGATAGGTCGGTCTGCAACGTGCGAAACTCACCCATCATGCGTTCCACATCAGTCGCCGGCGCGCCGTGTCCGCGCCGTTCGGCAAGCCATAATTTCAGCAAGCCGGCGACCCGGCCGAGATCGCCGTTGATACGGCCCAGCTCGGCGACGGCTTTCAAATCATAGACCGACCGAACCGGGTGATTGAGCGCCGCTGCTCGCACATAACCCGACACGCCCATGCCAGTGCTGGCGGCGCGCTGC # Questionable array : NO Score: 5.98 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.86, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGTTCCCCCGCACTCGTGGGGATAGACCC # Alternate repeat : GGTTCCCCCACACCCGTGGGGATAGACCC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-10.80,-6.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0.37 Confidence: MEDIUM] # Array family : NA // Array 1 41477-40106 **** Predicted by CRISPRDetect 2.4 *** >NZ_NHSM01000091.1 Rhodospirillum rubrum strain FR1-mutantIV scaffold0091, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 41476 29 100.0 32 ............................. CCGCTGATTCGCAGTCGGGCAACCAAACCAAA 41415 29 100.0 32 ............................. TCCAATCCCCCATCATGGCCTGCCCAGCGAAC 41354 29 100.0 32 ............................. CTCGTCTCTGCTGGCTTGGTCCGCCGACGCGC 41293 29 100.0 32 ............................. GATCATGACTGACCTCATCACGCTGCGCGACC 41232 29 100.0 32 ............................. ATCACCTTCGTGCCGTTTGGGACAAAGGTGTA 41171 29 100.0 32 ............................. ACGTAGTCCTTCATGGACATCTCGCCGGCGTC 41110 29 100.0 32 ............................. TGATCGCCCTCATCCTCGCAAACTGGCGCGCA 41049 29 100.0 32 ............................. CCATTGTGCGCCCTCTGCATCGCCAATGGGGA 40988 29 100.0 32 ............................. CCATCGATATCAATCGCTCCGGCCCGCCACTC 40927 29 100.0 32 ............................. GTCATCCCGATTGACCGGGCGCAGGTATTCGT 40866 29 100.0 32 ............................. TCCCCGTTGAGCATTTGCGAGCGCAGCGGCTC 40805 29 100.0 32 ............................. CTACAACCCGCCCCCGCCCCCGTGCCGAGCGG 40744 29 100.0 32 ............................. TGCGACTTAACGTCCTCTCAGAGACAACGGGA 40683 29 100.0 32 ............................. GTTCACGCAACGAAGACGGCTGAAATCGAAAT 40622 29 100.0 32 ............................. GTCACGGCGGCGACCCAGGGGTTGGCACTCCA 40561 29 100.0 32 ............................. CTTGGGGCGTCAATTGTGGCTCTTGTCGCCAG 40500 29 100.0 32 ............................. ACCCAGAGACCCGCACTTTCCAAAACGGCAGC 40439 29 100.0 32 ............................. ATCGTGCTCGCCGATATCCGCTTTAGGGATCC 40378 29 100.0 32 ............................. GCTTGCGTGATGTGGTGTTTGCCGCTGGCGAT 40317 29 100.0 32 ............................. TCCGCCCTGGCTGCGGCGATCGGCCTTTACAT 40256 29 100.0 32 ............................. TTTCGGCCAGTCGCGCGTTCGTTGTGTCGAGC 40195 29 100.0 32 ............................. CGGTTAGCCTCGACCAGGGCGGCGTCGGCGAT 40134 29 96.6 0 ....................A........ | ========== ====== ====== ====== ============================= ================================ ================== 23 29 99.9 32 CTGTTCCCCGCACACGCGGGGATGAACCG # Left flank : CAGTCGATGTTGCGCTTCGTCGGCATCGATCCAATGCGACAAGATATCATCGTCGTTAAAAGCTCGGTCCATTTCCGCGCCGATTTCGAACCGATCGCCGAAGCCATCCTCGACTGCGCCGCCCCCGGCCCGATGCTGGCCGACCCGGCGGCCCTGCCCTTCAAACGCTTGCGCAAAGGCCTGCGCCTATCCCCCAACGGCCCGGCCTTCGGGTGAGGAAGGGGGATGAGAGGTCATGGATTTTATCCCCCCGACCGGACTGTGCATCGCCCCCCGGAGGCGCCACCCGACCTTGCGAGCCCCCTTCCCGACCTGATAAACTTGCCCTTCCGCATTCAAAGGGGGGCGATCCCAGCCCGAGGTGATCGCGACCCGGCCGATTTGCGCCAATAATAAAGACAACCGTATGCCAAGCGGCCCCCACTAAGAACAAAACAGAAACATCGGTAAGTTTTTTGACATCGTGAAAAGACATGATAATCAACGACTTCCGTCGATGA # Right flank : CGAAATTCGCAGATCCGGTCCTGGGGCTTGCCTTCATGAACTGCCCGGCGCGGGAAAGGTGGCGGACCACCTCGGTGGCCCCGTCCCTTTTTTCCCGCCCGCCCCTGTCGGCATCGCTGACCCGCAAACGTGACCTGGGGCCGGAAGGACGGCTTCACCGGCGATAGCCGGGGCGACGCCGCGATGGGAAAAAACCCCCGACGGACAGGGCCCCGCCGGGGGTAGCGCCTCGCCCTAGGAGGACCGGCCTGTGGTCTCGGCATACGAGGCGCTTTGGGCCGAGGTTAAGTCGCCAGCCCCCGACCGGCAAGCCCCTTATGTCCCAAACCCTGGATCCAACCAAACCGGTCTTGATCTCAAAAGTCTCGCCTCGTAAGATTATCGGGCGAAGCGATGGTCGCTGACGGGAGCGTTAACCATCGCCGGCAGGTCCGCCGCCCGCTCCGGTGAGACTCCCATCCCCACCCTTGCTTTCGGCGCAAGCTGAGCGGGTGGAGATA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGTTCCCCGCACACGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCACACGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [38.3-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 2213-1023 **** Predicted by CRISPRDetect 2.4 *** >NZ_NHSM01000010.1 Rhodospirillum rubrum strain FR1-mutantIV scaffold0010, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 2212 29 100.0 32 ............................. CCCATGAGATGGGTCTGGTGCTTGACCGTGAG 2151 29 96.6 32 ............................A TTCCTGCAGCGCCTCAACGGACAGCCCGACCT 2090 29 100.0 32 ............................. CCAGCAGCGCCCTGAAGTCGCCCATCTGCCCC 2029 29 100.0 32 ............................. GCCTCCAGCGCTCCGCCGTCATCCTGGGCCCG 1968 29 100.0 32 ............................. GCGTCAGGCGAGGTGCGTTACACCCTGTTGCG 1907 29 100.0 32 ............................. CCTTAGGCTGGAAGGCCGACTTCACCGGCGCC 1846 29 100.0 32 ............................. CGCCTGTTCGCGCGATTGCAACGTCTTAACGA 1785 29 100.0 32 ............................. CCCGAAATGATCGGCGGTCCCCATCACCAGAA 1724 29 100.0 32 ............................. CTTCATCACGATCGCAATAGGTGATTTTCGCT 1663 29 100.0 32 ............................. ATGGCGACCCTTGAGGCCGAGGCCGTGGGGCT 1602 29 100.0 32 ............................. CCCTTGACTTGGTCATGGGGGCGATGGCGGGA 1541 29 100.0 33 ............................. CAGATCAGCGAGCAAAATCAAACGGCCTGGGGT 1479 29 100.0 32 ............................. CTCGATGACCGGCTTGCTCCCAATATTGTCGG 1418 29 100.0 32 ............................. CGATGGCTCGACCGGGTACTGCTATCGTGAGT 1357 29 100.0 32 ............................. CGCCCCCATGCGCAAATATTCCAGGGTGATCG 1296 29 100.0 32 ............................. GTCAATCTGGGCAGTCGGGCCTGGACCGATCT 1235 29 100.0 32 ............................. TAATCCACCCGGCCCTCGTCCGCCCCGGCAGC 1174 29 100.0 32 ............................. CGCGGGTCGATTCAGGCGAAACCTTGGGATTC 1113 29 100.0 32 ............................. GGCCTCCTCGGCCACGGCCCCGATATCCTGGT 1052 29 86.2 0 ...C..................GC....A | G [1026] ========== ====== ====== ====== ============================= ================================= ================== 20 29 99.1 32 CTGTTCCCCGCATGCGCGGGGATGAACCG # Left flank : CCGCCCCTTGACGCCCCCGAGGCCGTCGATCCGGTTATCCCGCCAGAGGAGCCTTCGGGTGATGATGGTCATCGTGGTTGAAAACGCCCCGCCCCGGCTGCGTGGACGCCTCGCCCTCTGGCTGGCCGAGATCAGGGCGGGGGTCTACGTCGGGGTCTATTCCCGCCGTGTCCGCGAACGCATCTGGGACGAGGTGACCCAGATGATCGACAAGGGAAGCGCCGTGATAACCTGGAGCGCCCCAACGGATTCGGGCTTCGCCTTCGAGGCCGTCGGCGAAAACCGCCGCGAACCGGTCGAAATCGACGGCCTGACCCTGGTCCGCTTCCACCCCGTCAAACAGCCGCCCGACTAACCGCGACCGCCGCCCCGGCACGACGATCGCCAAAGACAAAAAGCAGCCCGCCGAGCCGCGAAATCGCACCTAGAACAAAAACGGAACATCGGTAAGTTTTTTGACATCGTGAAAAGATATGATAATCAACGACTTCCGTTGATGA # Right flank : TGGTAACGGTTCCCCCGCATCTGGGGGAGGGGTGGCTGGATGATGCCATGATCTTCTGCCTTCTTTACTACTTCGGCTATCGTTCACCTAATTGGCAAGCGCTCTATTAAATCGACCTTGCGCTTATTAACGACTCGCGACAAACAGAAAATAAGCACTAGGTGGATTTTTCTGGGTGATTAGAGCCCAATGATTTATTCTGGTGAGATGGAGGGTCCCACATGATCAAAGGTCTGTTGCGCCAGCTTGGCGCGCAAAAATCGATTGCCGCGCAGATCGGCGTATCTGAACAAAGCGTTTCGAAGGTCGTTCGCGGAGACGCCAAGGGTGGAGGTTTACGCGTCGCTCTGGTGGTGCTGGCCGCCGCGGTGGCGGAGGTTGGCAGTGAAGCCGCCTCGCGCATCCTGGCGCGGGCGGCCGAAATGCTGAGGGCGCAGCGCCCTGACAAAGTCTGACTGTCCGAAGCGATTGAGACACATCACAACCAATACCAGTCATGT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGTTCCCCGCATGCGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCATGCGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [38.3-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //