Array 1 3004204-3008791 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP088954.1 Acinetobacter calcoaceticus strain ACa13 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 3004204 28 100.0 32 ............................ ACTCCACCATGCACATTTCAATGTGACCAAGA 3004264 28 100.0 32 ............................ TTCAAGTAATGTTTGTTTAATGATTTCATGGA 3004324 28 100.0 32 ............................ AGAGGCTCCGAAAGTTGAAGCCGAATCTGTCA 3004384 28 100.0 32 ............................ AGAATTGGCTGATTGCGGTACTACAATGGGAA 3004444 28 100.0 32 ............................ ACGAGCAATAAGGTTTGTTAGTAATTCAGTTT 3004504 28 100.0 32 ............................ GCAATCACGTCACGCTTGATCTGTTCACATGT 3004564 28 100.0 32 ............................ TTGATCACTGTTTTACGGTTAAGGACAGTGTC 3004624 28 100.0 32 ............................ TTTCTACCCAAAGACTATGATCAGGATTTAAA 3004684 28 100.0 32 ............................ ATTCCGCACGACCAGCCCAAATACTAGACAAA 3004744 28 100.0 32 ............................ GTCTAGCCATGTAATAACCTGGTCAACACGTT 3004804 28 100.0 32 ............................ CTGGAAGCCTGGTGAAATTAATACGGCATTAC 3004864 28 100.0 32 ............................ TGAACAGTTCGCAAGTGAAGAAGACTTCGAAG 3004924 28 100.0 32 ............................ AATCGACAAGCCGTGAGTGTCGATACTGGAAA 3004984 28 100.0 32 ............................ TCGACAGGTTCAACTGGTGCAATTGGTAGATC 3005044 28 100.0 32 ............................ AGGTTGCCAACGCTTTTGTTGATGAAGCAATG 3005104 28 100.0 32 ............................ AAGCCGAAGCATTAATGACAACTGTTGCTAGT 3005164 28 100.0 32 ............................ GATCTAGCTCTTTGTTCAAATCAGCAGAAATA 3005224 28 100.0 32 ............................ TTCATATTGGGCATAAAAACCAGGTGTACTTT 3005284 28 100.0 32 ............................ ATCAAATTGCCAGCATTGAGGCCGAGACGGAT 3005344 28 100.0 32 ............................ AAATTCTAGTATCACAAGGTTTCAATTCTTAC 3005404 28 100.0 32 ............................ CAAGGCTTGCCAGACTTCGATGCAAACGGAAC 3005464 28 100.0 32 ............................ AGTATCCGGTGGAGCTGGAAGCCATTGTTCAA 3005524 28 100.0 32 ............................ TTCTCAACAACGTAGTATTCAGCTACATAAAC 3005584 28 100.0 32 ............................ AGTACAACCGATTTTGAGCCTTTGACCTGTCT 3005644 28 100.0 32 ............................ GTTTGCGTGGTCGTCCTTTCTTTGGCTCATCA 3005704 28 100.0 32 ............................ CATTAATGCGTGTTGTCCTTGCGAGTAAGACC 3005764 28 100.0 32 ............................ TCTACTGAAGCCGCATAGTTAATATCGACCTC 3005824 28 100.0 32 ............................ CACGAACATCAATATATTCAGTCGTTACGCTG 3005884 28 100.0 32 ............................ AATGTGAAAGGTGTGGCTTCAGGTAAGCGATA 3005944 28 100.0 32 ............................ GCAATTTTAGTCTTGTTTGACATTACATTCAC 3006004 28 100.0 32 ............................ TATTACAACGTACGGCAACAGTTCTAGATATC 3006064 28 100.0 32 ............................ ATTCCCATCGTACAATTCAAACTTTAGCTGAT 3006124 28 100.0 32 ............................ ATCACAAGATCCAAATATTAAATTACGGGTAT 3006184 28 100.0 32 ............................ GATCAAGCAAGGTTTAAAACGTCCTGTAATGG 3006244 28 100.0 32 ............................ TGAAGGTACATATCTTCTTTTAAATCCTTCAA 3006304 28 100.0 32 ............................ ACCAATTTCATTCCAAGTGACATAACCATCAT 3006364 28 100.0 32 ............................ ACTTGCAACTGGTAATTAGATTTAATTTTTGC 3006424 28 100.0 32 ............................ TTGTGCATACATATTGCCGCCAGCAAGTGAAC 3006484 28 100.0 32 ............................ TTACTCAGTGATGAGCGGCTAGATAATACTCA 3006544 28 100.0 32 ............................ TGCTGGGTTAGGATGAAGTCCATCGCGCAAGA 3006604 28 100.0 32 ............................ ATACGCTACATGATGCTAAGCGTCTGTTCCGT 3006664 28 100.0 32 ............................ GATTTCCATTGAGACCCATTTAATTAAAGCCC 3006724 28 100.0 32 ............................ TTTGAATACAATACTGGTTTAGCTGCCTTATC 3006784 28 100.0 32 ............................ CATTGGAATGAATGGGCCAAATTCGGAAAGAT 3006844 28 100.0 32 ............................ TGAAAAACGCTGTCATTCATTTATCAGAAATG 3006904 28 100.0 32 ............................ TATCCATTTAATTATGTGGTTTGACATTTATA 3006964 28 100.0 32 ............................ TTCGTGGACTGGCACAGATTTAACAACTACAT 3007024 28 100.0 32 ............................ GCCCAAGAAATACAACTAGATCAAGTTATTTC 3007084 28 100.0 32 ............................ AATTTGCGCAGTCGATATTGACGTTACTGATG 3007144 28 100.0 32 ............................ ATAGCTAAATCTCCATTACTTCAATACTTGGA 3007204 28 100.0 32 ............................ ATGAACGACACACGGATTGCCGTATCGCTGAA 3007264 28 100.0 32 ............................ CGAAACATAAAAGCCAGCCGCTTGGTGCTGTG 3007324 28 100.0 32 ............................ TCGCAAGGCTTCAAAAATGCTATGAGTAGCTT 3007384 28 100.0 31 ............................ ATAACAGCCCTAGATTCATCACTGTTTGCAC 3007443 28 92.9 32 .G.T........................ TTGAACATGTTGTCTTGACAACCCGCGTCATA G [3007448] 3007504 28 92.9 32 ...CG....................... ACGGTCATTAATTTTTTGGTCAAGATGCCAAA 3007564 28 92.9 32 ...CG....................... TTAGTGATGTTGATCGTGTTGCTTTCTCCCGT 3007624 28 100.0 32 ............................ TTTAGCCAGTTCATCAGTAAGTTATAACAACC 3007684 28 92.9 32 ...CG....................... AAAGTTAGATCGACAACGATAGGAGTTTCATT 3007744 28 96.4 32 ...C........................ ACCATATAGACGATGCATTTTAGATCCCTCAA 3007804 28 92.9 32 ...CG....................... TGTTAAAACCTCATCCAATAATGTGATGTTTT 3007864 28 92.9 32 ...CG....................... TCCTTTTCTCAGGTTGCACAGCTCATACAATT 3007924 28 96.4 32 ....................C....... TCTGGCATATCAAAGTTAAACCAACCCACATA 3007984 28 92.9 32 ............GT.............. GCATGTCTCCCTTGTCATGCGGGCTTCTTTTT 3008044 28 85.7 32 ...AT.......AT.............. TCGATCTGAGTTGAAGAAATTCCGACTAAACG 3008104 28 89.3 32 .C..........AT.............. GATCATCTACAGTGATTGAATAAACGGTTTTT 3008164 28 92.9 32 ............GT.............. ATATTCGAAAGTGTCGTTTTTCTCAATTCCTT 3008224 28 100.0 32 ............................ ACGTTCGCCCGCGGTTATCCGACCAATCTAAA 3008284 28 100.0 32 ............................ TCAATTGCACTTGAACCCAAGGCTGCCAAAGC 3008344 28 100.0 32 ............................ GTCAACGTATCACTGATCGCTATATCGCTAAC 3008404 28 96.4 32 ...T........................ TAACTACGAAATGACCCAGAGTCGTTTTTTAT 3008464 28 96.4 32 ...T........................ ATAAGGTAGCCAATCTGCGCATTTGTTAGGCC 3008524 28 96.4 32 ...T........................ TGATACTTGCTGCCATAACCCGTAAAACCACC 3008584 28 96.4 32 ...T........................ TTCATGGCAGCATTGAATCCAATATCTAAACC 3008644 28 85.7 32 ..ACA.......T............... TGTTCAATCTCTTGCGAGATTATGGCGGTAAG 3008704 28 89.3 32 ...C.......TA............... ACGTCTTCTAATGGTAGGCACTAGTCCAATAT 3008764 28 78.6 0 A...G.......T..A........AT.. | ========== ====== ====== ====== ============================ ================================ ================== 77 28 98.1 32 GTTGCTCATCGCCCAGATGATTTAGAAA # Left flank : ACGTTGGGCCAAAACATTATACAAGCAACTTGCTAAAGGCTTTGGAGTTGAATTTATTCGTGATGAAGGAAAAAACTCTCATGACACTATTGCTGATATAGCCAACAGCTACCTCGATCATGGAAATTATATTGCCTATGGCTATGCAGCAGTTGCTTTAAATGGAATGGGAATTAGCTTTGCCCTCCCTATTTTGCACGGTAAAACACGTCGTGGAGGTCTAGTATTTGACCTAGCGGATCTAGTGAAAGATGCTTTTGTTATGCCACTCGCTTTTACATGTGCAGCAAAAGGATTAAATCAAAAAGAATTCCGAATGCAGCTTATTGAAACATGCCAAGACCAAGATATTTTAGATTACATGTTTAGCTTCATTACTGACATATGTAGTAAAATCAAATAAAATCATAGATTTAATTTAAGTGCATCATAACGAAGTATTTTCACTCATTAAAAACTTATATAATTGATTTTAAGAGTTTTGTTTTAACTTAACTCTA # Right flank : ATTTGAATCTTAAAAAGAAAAACCCCGAAACTTACGTTTCAGGGTTTTTCACGAATTTTGGTGGAGATGGCGGGAGTTGAACCCGCGTCCGCCAGCATTACGCTCGAGAATACTACATGCTTAGATATCGTCTATTGTTTTAACACCTTGTGACCCGACGAACAGGGTACAAGTTGCGATCCTCTAAGTTTGGTATAAAGCCCCGAGGCTTGACTCTATACGGACTTGTGTGCGTGCGCTACGGTCGGGTTCCTAAACCACAAGTATTCTAGGAAGCGGACAAACTGCCCTTAGGCAGCTAGAGCGTAAGTTTCGTCGTTTGCGACTAAAATATGCAAATTTGATTTACGAGAGAAAATGCGCTCTCGGCATGCATCTATGAGTTTCATCACCAGCGTCGAAGCCAATAACATCCCCATGAATGTATGAGCATCATAGCATAACTAAAATAAAATACTGTGCATTTTATCAACAGTCCGCTACTGATGAACATATTTACA # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCTCATCGCCCAGATGATTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: F [matched GTTACTCATCGCCCAGATGATTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.70,-3.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-31] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [81.7-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //