Array 1 189034-188704 **** Predicted by CRISPRDetect 2.4 *** >NZ_MVIT01000077.1 Leptospira kirschneri serovar Pomona strain M110/06 Contig_2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =================================== ================== 189033 37 100.0 35 ..................................... TTGTGCTTGGACGTTATCGAGTGCGGTTTGATGGT 188961 37 100.0 35 ..................................... TCTCTCATTATATGTCCCGGCCTTCCAGAATTGGA 188889 37 100.0 35 ..................................... CGGTTGGGCTCTTGACAAATTGATCGTCGAGTTGA 188817 37 97.3 34 ...................T................. TCTCTGAGATCTTTTTCCAAACTTCCGAGTCTCG 188746 37 94.6 0 ..........................A........G. | AAAC,AA [188711,188718] ========== ====== ====== ====== ===================================== =================================== ================== 5 37 98.4 35 GTTCTTTCTCTTCTTTAAAAGGAGAGTGGATTGAAAC # Left flank : TGATTCCGAAGATGCACGTAAAAAAAATAGAAGGGTCAATTTTACCATTCTGAAGAAAAGTAAGTAAAACTTTTCTATATTTTAGATATTTAATAGAGTTGTTGAAAAATTCCATAGTGGCGATTCGTAAAATTGCTTCAATTGTCCATTCCAATCAGATCAAGAATTAATTTTCCAACAACTCTATAATTCAAATTACGAAACACAGTGGTTTTCATAATTACGTCTCTTTAGATAGTTATAAATTTCTAATTCTATTCTTTCTTTAACTATATTATAGATTTTTAAAAGCCGATCATTTATAATGAAAACGCTTTTGCGAACCTGTTTCTCCCGATCAATCACGAACCTTTCGCACCCTTGTATTGATTCTCTGTTTGGCGATTGAACGGTTTCGCTTAGCATTTGTTCAGCATGGCAAAAGTAGGTTCGCAATTATTATGTCTATAAAAGCCAATAAAGCTTTTATAATATATAATTTTTCTACCTATCAAGCCGCT # Right flank : CAATCTAGAAAAAAGTTGGGATCTGGACTTTGTAGATCGATTCTTTAAATGTGGAACTACTGCAAAATTTCGTTCGGAAAAGTGTGATTTAAAATCGCAAAAAAGATAAAAAGAGACGTAATCCGTAGGAACTACCACAATTTAAAAAATAGAAGTTTATAACTTGTCGTATTCAAGTGTGGAACTACTGGTAAATCCACTATTTGTGAGAGTTCCCACATTTTTGAGACCAGAAATAGGAAAGGTTTAGTTTCTACCCTCTGGACGCGAAATCGATACGAGGGAACTTTAGCAGAACGTTCTCTCAAATAAAAGACGAGATATTGTATTAGGTTTCTTTTATGAAATTTATTGACTGGAGCCAAAAGCGCGGTCCTGCAAAGCAGGATTCGCCTAAACTTTCTTACGCAGAATTCGCATTATTTAGTGTAGATTATCGGATTGGATACTTTATTATGCAGCTCAGATCAGTGCGTAAAAATTCCCTTCTAACTCTTATA # Questionable array : NO Score: 5.82 # Score Detail : 1:0, 2:0, 3:3, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCTTTCTCTTCTTTAAAAGGAGAGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.60,-7.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [60.0-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : NA // Array 1 7720-7157 **** Predicted by CRISPRDetect 2.4 *** >NZ_MVIT01000049.1 Leptospira kirschneri serovar Pomona strain M110/06 Contig_30, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================================================================================================================== ================== 7719 37 100.0 33 ..................................... ATAGATTTTGTTCCTTTTGGTTTGCGAGGTGAT 7649 37 100.0 33 ..................................... ATAGATTTTGTTCCTTTTGGTTTGCGAGGTGAT 7579 37 100.0 34 ..................................... TATGTTTTTCTAATATTGCTAACTTGCCTTGCGA 7508 37 100.0 35 ..................................... GGGATCACCGGCCCAAATATGGGAGCAATTGCAAT 7436 37 100.0 36 ..................................... TCGAATTATTTGCGAGAAAAAAGGGAGATTCCTTTC 7363 37 97.3 134 ..........................C.......... TATGTGGGCGGTCTTACGACCACATTTGCCTACTCCATTAGAGTGAAAACGACAAGCTATGTGACATATTTAACTAACTTTAATTTTTTGTTTTTAGTAAATTGAATCTTCTTTGCGATCGTTTTTGATGCGAC 7192 36 70.3 0 C......T..C.A.CG....-.A....A.G......T | ========== ====== ====== ====== ===================================== ====================================================================================================================================== ================== 7 37 95.4 51 GTTTCTTCCTTTGTTTAAGAAGGAAGTGGATTGAAAC # Left flank : TCGATAAGCATATATTCTGAAATACAATCCATTTAGAACAGAACTTCTATATTTTTAGAATATTCCATTATTTACTTATAATAAGGCCCTACAAATTTTAGAAACAGATTCAGTTTAGACAAAATTCTGTACGCTCTGATTCTATGGTTTCTGAATTAGTTAAGTTTTCAAGTCCAGCGCTTAGACAATCATCTCAACAAGAATGAAAGAACCCTTGAGTTAAATTTCAAAATCGATCTTTTTAGTCACAAACTGAACAATCCGGAATTCAATATTCTTGACTTTAAAACCTGGGTCATTTTATGATGAAACGCTTTTTGCGAACCTGTTTCTCCCGATCTTTTGCAGCCCTTTCGCGTTTCAATAGACGGTCGCCATTTGTCGATTGAATGGGTTTTGCTCAGCAATTACAGTATGTTACGATTAGGTTCGCAATTATTATGTCTAGAAAAGGTAATAAAGTTTTTTCTAATTCATAAATTGAGACTTTTCTAACCGCT # Right flank : TAACACGGTCTTACGACCACATTTCTTACTTTGTTCGCAATGGATGGAAATCGGCATTTTAATGCCGATTGACTTACAAGTAATAATTTAACGTGAATTCGTCGTAAGAGATTGTTTGATAAAAACCTGATTTTTCCATAAAAAATCAATGTTTAAAAATTTGTAATGCGGTTTGAGACGCAGAAATTCCCAAAAATCAAGTCGGCCCGGATTATTTAACTTTTTGTGGTAAATCCTACATTCTCAGTTTTTTACAAACTAGAATTTGACGTTACGCGAAATGGACCAACGCAGGGAACTTTAGCAGAACGCTCTTTCAAACCAAAACGTCTCACTTACTGAATGCCGATCTTTAGAGAATCATTCGCTGAGTTTTCTGGATCGTTAGACGGTATCGTGTTCTATAATCAGGTGAATTAGCACGAAAGGGATCGATGCGGGGTTAATAAATTGCGACTTAAGACGATATGTTGCATTACATTTCCTGCATGCAATTTATT # Questionable array : NO Score: 4.31 # Score Detail : 1:0, 2:0, 3:3, 4:0.77, 5:0, 6:0.25, 7:-1.71, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCTTCCTTTGTTTAAGAAGGAAGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.50,-6.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [12-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [60.0-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : NA // Array 1 24540-24147 **** Predicted by CRISPRDetect 2.4 *** >NZ_MVIT01000042.1 Leptospira kirschneri serovar Pomona strain M110/06 Contig_33, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ====================================== ================== 24539 36 100.0 34 .................................... TTCGAAGCATTTTTAAGAAATTCTTCAGCCTCTT 24469 36 97.2 34 .....................C.............. AAAGAATTCTTCTACTTCTTTTCGGGTATCCGAA 24399 36 100.0 34 .................................... GGAACCTAAACTCTCTATTACACTCGTCGTAAAA 24329 36 97.2 38 .....................C.............. TATGCTGGGTTTGCATTAGGTGGCCTCTGGATAATATC 24255 36 100.0 37 .................................... TAAGAGAAGACTTAACGAATAAACTGATTGTAGATTG 24182 36 94.4 0 ............................C.A..... | ========== ====== ====== ====== ==================================== ====================================== ================== 6 36 98.1 36 CTGAACTTAACTTTGATGCCGTAAGGCGTTGAGCAC # Left flank : CTGATTGTATTCAGAGTTCATCGGTCCCAAACCTTCAACGTGATCCCTTTTTCTATAATAGACTTCCGTTGTGTCGCTTAATACCAATACTGTTTCTTGTTTTTGAATTCGTTTCTTTGTTGCTTGGCTATGAGGAGATATTATCTTATCATAACATACTTTCGGATTTGAAAAAAAACGATATGCACCCTTCGTGCCTGACCAATTGCCAAATATATCTGGCAAACTCATTCCACCTCGCTTGGTCATCATGCTGACTATTTTCTTTAGTCGTTTATCTAATCTTTTATCTCCTAAGTTCAATGACAGATATTCTTCTTCCACCCAATCTAATTCCGTTCCAAGTGTACTACTCCAATGTTTAGTGTTCATTATATTCACCTGAACTATTTTGGAAGATTGGGGTTTTAAAATCTAATTTTTTATGATATTTGTGGGTAAGGTTATGGTAAGGCGTTGAGCACTGTTATGGGACATAGGACCAAACTTCCCATAATACA # Right flank : AAAAGGACAGAAAAATCGGCCGATGCGAAAGCGATCGAAGTGAAAATCCTGCAATGCAACATGATTTCACTATAAATATTCGAATATACTGAATTTATAACATGTTGCGTTGCAGATTGAAACGGAGAGCGCGGTTTTTCTTCGCGGAGGCGAAGAAAAATTCGCCCCGCCTTTTATTTTCCGAATGACCGAAAGCTGAATAGAATTATACCGCAATTCGAATATTATAAAAATAGGAACTTCTTCTTGGAAAATCCTTCGTTTTATTTTTTGATCGAGAATGTTTTTCGACCTTGAATCAAATCGTATTTTTTAACGTTTCATGGTCGCAACCCAATGTGCAATGTTTTTGAATTCAGGATTTTCCTCGAGGGAGGAAAAATATTCTCTCGCCCATAAGAAATGAGCGCTTAAATACTCTTCCTCCTGGAGTTCCCGCAAATGTTGTAGTGCCAGTTCCGGTTGTTTGTTAATCGCAAAATATCCGGCAAGCACGAGTC # Questionable array : NO Score: 3.16 # Score Detail : 1:0, 2:0, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGAACTTAACTTTGATGCCGTAAGGCGTTGAGCAC # Alternate repeat : CTGAACTTAACTTTGATGCCGCAAGGCGTTGAGCAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.00,-7.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 1 9823-9501 **** Predicted by CRISPRDetect 2.4 *** >NZ_MVIT01000043.1 Leptospira kirschneri serovar Pomona strain M110/06 Contig_40, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =================================== ================== 9822 37 100.0 35 ..................................... GGAAGATAAAGCACTTGAGCGCTTTGATTCGATTG 9750 37 100.0 33 ..................................... TATGCCAACGGGTCTGAACTATCAGGACCACCC 9680 37 100.0 35 ..................................... TATCGAATCGGCCTATAGGAGTTCCGTAGGAGACC 9608 37 97.3 33 ..........................T.......... CTCACGTTTACGGATTTAGAATCAGATTGGGAA 9538 36 75.7 0 ..........A..G...G..G....CT...A.-...G | TC [9511] ========== ====== ====== ====== ===================================== =================================== ================== 5 37 94.6 34 GTTTCTTCCTCTTCTTTAAGAGGAAGCGGATTGAAAC # Left flank : TTATAGAGAATTTTATTAGGTTGTTTCAAAACTAAAAACTTCGCGAATGTTTACCGACGAGTCAGTCTATTTTACTGAGTTTAAATTCAATTGTTTTTGAATTGATCCTTTCAAAATCTCTAAAATTCGTAAGACCTAAAAAACATTTTTTTAAAATTTTGATTTGAGATAATTTCTAAAGAATTCTTCCGTTTCTTTTCCGAAAATTTCAGTTAGGTGAACATTGACTCATTTATAGTTTTAAATCTATTTTTCCTGGAATCCTATTATAAGTTTTTGCCTTTGATTAGCCGATCTTTTACAATGAATTGTTCTTTGCGAACCTGTTTTTCCCGATCAATTGTGGATCTTTCGCGCTCTTGTATAGATTCGTTGTTTGGCGATGGAATAGATTAGCTTAACAATTGTACAGTATGGTAAAAATAGGTTCGCGATTATTATGTCTAGAAAGCTTAATAAAGTATTTTATAATACATTATTTTCAGTCCTATCAAGCCGCT # Right flank : TGTCTAAAATTTTGTTCCTGAAACGGAGATACTTTTCAAAAGTTATGATACTCTAATATATGAGAAATGACTAATCGATAGGAATTGATTGCTCGGAACAATAATTTCTAAGTTTTGTGAGAGCTCCCACAATTTTAAAAAATTGGAATGTTTTGTATATCAAACACTACAGGTTTTTATTTAACATAAATTCGAAATAATAGAAATTAGGAAAAAGCTATTCTAAGAATAGGAGTTCCTTTTTATTTTTACGGACCAAAGTTTCTCTTTCGGAGAATGCCTGGTTTGGTAAATTCTACCGTGAAAATTGAGTATTCGTGGTGGTAGTTCCCACAGATTAAGTCTCTTTGTGAAGTTTATAGATTTATAAATCGTATTTTCATTGTTAAATTCAGTGGTAGTTCCCACAAATTAAATCACATTGTGAATGTATAGGTTTTAAATGCATTTTAACGTGAGTTCGACGTAATAAAATTAGGGCGAATCCGGCTGCGCTTTCG # Questionable array : NO Score: 5.82 # Score Detail : 1:0, 2:0, 3:3, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCTTCCTCTTCTTTAAGAGGAAGCGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:59.46%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-9.20,-8.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [58.3-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.18 Confidence: HIGH] # Array family : NA // Array 1 11537-11929 **** Predicted by CRISPRDetect 2.4 *** >NZ_MVIT01000019.1 Leptospira kirschneri serovar Pomona strain M110/06 Contig_60, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =================================== ================== 11537 37 100.0 34 ..................................... ACCTATGACGAAATAATAGAATATGCCGATGGGA 11608 37 100.0 35 ..................................... AAGTCTATATTGAGTAATCATTCGCTGAACTCCTC 11680 37 97.3 33 ................G.................... CTTTTATATTCTTTTTGACCTCGTCCCAAAAGC 11750 37 97.3 35 ................G.................... CAGGAGTATCCAATACGCAAGTCGGTTTAACGAAT 11822 37 100.0 35 ..................................... CACAACGGGGAATATTACCATAACGGGACCGGCGT 11894 36 78.4 0 ....T...........G.......G..T.-.CA...A | ========== ====== ====== ====== ===================================== =================================== ================== 6 37 95.5 35 ATTTCTTTCTCTTATTAAAGAGGAAGTGGATTGAAAC # Left flank : TAGAAAGATTATCACAGTCCAAAGTTAGAATTTTATCTTCTTCGATTTTTCCCCATTGAATCGAATTCTTTTTTTTGAATCGTATATAGTTGGTCGCCATTCAAAATACCTAAACGTATAATAAGAATTTTATAAAAATGCCATATTTGTGATTAATATATTTTTAAAATACAACAATCAGTAAAGAACATATTTAGTTGAACAACATTTTTTATTTGTTTTTATAGAAAACCCTATTTTTGCATAAATTAAGCGGTTTTTAGTTTCAGGATATTCTTGACTTTTAAGGGCCGATCCTTTTATGATATAACACTTTTTGCGAACCTGTTTTTCCCGATCCTTTTCGGCCGGTTCGCGTTTAAACGTTTGGTCTACGTTAGTCGATTTGACGGTTTTACTTAGTATTTGTATGGTATGCTCCGATTCGGTTCGCAATTATTATGTCTAGAAAGCTCAATAGAGCTTTTTCTAATCCATAAACTTGCACCTTTTCGGCCGCT # Right flank : AAACGATTTATTTAAAAAAAATTATTTTAGGTTTTAAGACGACCTCTTTATAAAAGTTTTCCCTTAAAGTAAAATCCTAGATATTCAATTATAAAATTCTAATTCATATAACGTGATTTAAATTCTAGATATTTATTTTATAAAACTGAATTTCTTCGTAAAAAATTGCGAGAGAACGATTTAAGCTCTACTGAAAAAATGTAGGAACTACTACATTTTATAGATTGAATAAACCATTGTTAAACTTTACAACAAAGTATGACTATGATAGGTAGTTTGTGGGAACTCATACAATCTGATTACTGTGATGTAGGTTTATTCCAAGCAAGGAATTTGGTTCTACTACTGATCTCTATAAAATTAAGTACCGTTAATTTTATCGCAAAACACTGATTCCATGCAAAATATTAGGTACTTTATTGATAGTTATGAGTGATAATTATATAATAGAGTTGTTGAAAAATTCTGTCTCTTATACACATACAACGCTGCCGACGAAT # Questionable array : NO Score: 6.04 # Score Detail : 1:0, 2:0, 3:3, 4:0.78, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTCTTTCTCTTATTAAAGAGGAAGTGGATTGAAAC # Alternate repeat : ATTTCTTTCTCTTATTGAAGAGGAAGTGGATTGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.27%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.40,-4.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [60.0-80.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.27 Confidence: HIGH] # Array family : NA // Array 1 30032-29712 **** Predicted by CRISPRDetect 2.4 *** >NZ_MVIT01000062.1 Leptospira kirschneri serovar Pomona strain M110/06 Contig_17, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =================================== ================== 30031 37 100.0 33 ..................................... GCGGTGTCGGTTAACTCGGTATACAGATCCCAG 29961 37 100.0 33 ..................................... TAAAGTTTCTTAAAACGATTCCATAACCAGAGA 29891 37 100.0 34 ..................................... CCCTGACTCACGAAATTTCCCTTTCTTTTTTACG 29820 37 97.3 35 ...................T................. TAGTTCTTTATATAGAGTCGCATCCCCTGGAGCGC 29748 37 78.4 0 ..........................AAAGAAC..G. | ========== ====== ====== ====== ===================================== =================================== ================== 5 37 95.1 34 GTTCTTTCTCTTCTTTAAAAGGAGAGTGGATTGAAAC # Left flank : ACACAAAAAGGATCGATGCGATAGGAACTTTAGCAAAACACTCTTTCAAACTAAAACACCTCACTGTTCGACAGATTCACATATTACATTGGATTATACAGAATTCTCTTAACCGACGCTTTATAACAACATTTACCGAGGTTCAATTTTATGGGATGAGTAAAACATATAATATAGCAACAAACATAATTCAAAATACGAAACACAGTGGTTTTCATAATTACGTCTCTTTAGATAGTTATAAATTTCTAATTCTATTCTTTCTTTAACTATATTATAGATTTTTAAAAGCCGATCATTTATAATGAAAACGCTTCTGCGAACCTGTTTCTCCCGATCAACCACGAACCTTTCGCACCCTTGTATTGATTCTCTGTTTGGCGATTGAACGGTTTCGCTTAGCATTTGTTCAGCATGGCAAAAGTAGGTTCGCAATTATTATGTCTATAAAAGCCAATAAAGCTTTTATAATATATAATTTTTCTACCTATCAAGCCGCT # Right flank : CAAAGCCAATCCAGATTGTATTCAATTCCGACAGAACCCAATTTATTTCAGTTTGAATTCTCTATGACAAAATAGCGCCCCTTCTGAACTTGAAAAGAATGAGTTCGGCCGAGAAAAAATTCTCTAAAAGTATGATATCAGAATTTGTTCGTAAAACCGCGATTCGTGGTAGTTCCCACATTTTAGGAATCGATCTGTAAAGTTCAGATTTCAACTTTTTTCAGAAAAATGAATCATGTTCAAACTCACGTTAGTATAAAATCAATTTTAAGGTAGATCCCCACTTTGTAACATGAACAAAAAAGTGTACTCAGACACATGAAAATAATACGATTCTAATATTTCTTTCAAAACTTAAAATGTGGGAACTAACACAAAACAAGCATAAATTACGGAACAACACAAATTATAAGAGCTTTTACACTTTCGCAAATAATACACTGCTCATTTTTGATGCCATTTTCATAATAATTTAACATGGGTTTGGCGTAAAAGATTCA # Questionable array : NO Score: 5.81 # Score Detail : 1:0, 2:0, 3:3, 4:0.75, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCTTTCTCTTCTTTAAAAGGAGAGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.60,-7.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : NA // Array 1 129445-129762 **** Predicted by CRISPRDetect 2.4 *** >NZ_MVIT01000074.1 Leptospira kirschneri serovar Pomona strain M110/06 Contig_7, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ===================================== ================== 129445 35 100.0 37 ................................... ACATTTGAGTAATACAAACGACCCAACGCCTCTTCGG 129517 35 100.0 35 ................................... ACACCCGATGACTATGGCAACATTTTGTCTATCCC 129587 35 100.0 35 ................................... ACGTTTAACGCCATGCTTGGGCCTATTGGGCTTGT 129657 35 100.0 36 ................................... ACTTTTTACGAGATTCATAATTTGATAGTCTCGTCT 129728 35 100.0 0 ................................... | ========== ====== ====== ====== =================================== ===================================== ================== 5 35 100.0 36 GTTTCTTCCTTTGTTCGCAAAGGAAGCGGATTGAA # Left flank : GAGTTCGGCTGAGTAAATATTTTTATAAAAGTATGAGTTCCTACAATTTTAGAAATTGTTTGTAATATCTTGATTTGTGAGAGTTCCCACATCACTTTACTGACAAACCTAAATTTTGTAATAGTTCCCACATTTAAGGAATCGATCTGTAAAGTTCAAATTCCAACTTTTTAGAATCATAAGTTCCTTACGCCAAACTCACGTTATATTACAATGATTCAAAACCAAATATTAAGTCTCTTTAGATATTTAAGAATAGTTTATTTTTGTTATATTATTGACCTTTAAAATCCGATTATTCTATAATAAAACGCTTTTGCGAACCCGTTTCTCCCGATTTTACACGGGACTTTCGCACCCAAACGTATACATGTCGTTTGGCGATTGAATGGTTTTGCTTAACGTTTATTCAGTATGGCACATACAGATTCGCAATTATTATGTCTAGAAAATGTTATTAACCTTTTTCTTATACATCTTTGCGGGGCTTTTGAGCCGCT # Right flank : ACAGGTCAAGCGAATCACCAAACTTCTTTTTGATTTGTTTCTTCCTTTATTTACAAAGAAAGAAACAAAAAAGAAATATGATTCATTCCTTTAACGTGAATTCGATGTAATCAATGTAAAAACAATTGAGGCGAGAACTCAGTGTTTCATAGACAGGTCTTTGTTTAGATCACGCTCTAAACTCAAACCCTCAGGAATATTTTTTATATCCGATTTGTAAAAACAGTTTAATTTTTTAATTGTCAATTACTTGTGAGATTGAACATTCTAAATTTCAAATGAAAGTATGGCATTTCCCACAAATCATTGAGATTCACTACTTTTTCGCCGCTATAAATTTTTTGTATGAGTGCTACATTCCATTTTTGTAAAAAACGAACCTTTATAAAATTACAAATTCTAGTTACGCACATTCCACATAACGACCTTTTATCTCTAAGTTAAGTATCATTTCAAATGACTTTCAATTTAAACATAAAATATTGTTTTTCCTCCATTGG # Questionable array : NO Score: 3.06 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCTTCCTTTGTTCGCAAAGGAAGCGGATTGAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-8.40,-8.30] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [63.3-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0,0 Confidence: NA] # Array family : NA //