Array 1 274376-275335 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACBCE010000002.1 Clostridium botulinum strain GiorgioA-KM21-1 2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 274376 30 100.0 36 .............................. TAATATCACCTTTTCTATTTTTATTTTTATTATTCA 274442 30 100.0 36 .............................. CCAACTTTATATAAAAATAAAAAAGCCTTAATTTTA 274508 30 100.0 36 .............................. TGTTGCCATAGATAAGGAACTGTTTTTCCATTATTT 274574 30 100.0 37 .............................. ACGATTAAAGTCCGAAACAATGGAGCAATAGATTTAT 274641 30 100.0 37 .............................. AACCATATATCATTTATTTCAAAATCAAATATCCAAT 274708 30 100.0 35 .............................. AATAATAAGCCATATTTAATAGGATCAAGGTTTGT 274773 30 93.3 37 A...............A............. TTAAGTTTGTAAAAAGCTTTATGAAGTTCTACAATAG 274840 30 93.3 36 ...............GA............. AAACATAGAAATACTGTTTTCTCTTTTGCTTAATTC 274906 30 93.3 37 ........A.......A............. TTTATTAGCAAATTTAATGCTCCTCTTAAGTCTGCTA 274973 30 86.7 36 .C......AC......A............. TGTAATAATGTTGCTATTATTTCATATAGTGGTCTA 275039 30 90.0 36 .......G.......GA............. ATTACTACACCATCTGGAATATTTTCATCATTAATT 275105 30 96.7 37 ........A..................... TTAAATGCTTCAGCAATTTGAAATTTATCGGCTCCTT 275172 30 90.0 36 A..............GA............. TAATTTCTGTTGTTCTGTACCCAGCTTGTCCTAGCA 275238 30 93.3 36 ............T...A............. TAATCATTCATTAAATTAAAACAAAAATAATTATAA 275304 30 93.3 0 ................A............A | TA [275328] ========== ====== ====== ====== ============================== ===================================== ================== 15 30 95.3 36 GTTGAACATTAACATAGGATGTATTTAAAT # Left flank : GCAGATGCTATAGTTAAAGGATTAGTAGGACAGACTACAAGTAGTACACCAAGCAAACCAACAGATAACAACAATAATGGATGGATTAATTTAGATGGTAAAACAGGTACAATAAATACACCAAGTGGTGTAAATGTAAGAGAAAAGAAATCTACATCTTCTAAAATATTAGGGGCTTTACCTAATGGTGCCAAGGTTAATTTATATCGTAAAGAAGGAGATTGGATACATATATATTATCCACCACATGGAGGGTATGTGTATGCTAAATATATAAGATATTAAGTTTTAGAGGTATTTTCCTTCATGGAAATACCTTTTATTTTTCCAACCTACTTTAATTTTAAAACCTATCTTAGTCATTGCTATACAAGGATTTAAGGTAGGTTTTCTATATAAATTTTAAATTATCTCAATCGGTTGGAAAATTTTCTTTAGAACCTTGTAAAATCAATACTTCTATGTTATTCTTAAAAATAAGGAATGGCTATTTTGCTATG # Right flank : AATGGTGGTTGTAGCTTATGCCCTATGGCTATTATTTTTTATTATTTAAAGGAATTTTTTAACATTTATAGAATATTAAATATAACGGCTTCCCAATAGGTTAATTATAGACCTCCTTGCTTAAGCAAAAAGAACCCCAATAAAAAGGGGTTCTTTTGCATGGGATTTTCTATATATTGGTGCTATGTTTTGGTCTATTTTTATTATATCCAGGTATAATAATCTTAATCATGTATAGAGGAATTATATGAAATATGCAGAATAATACAAATTAAGTTCGCAACTATGCTTAATTACATAAGCACTAAGTCATAAACTTAAAACCCTGGGATAACCCAGGGATCTTTTTAAAATTACTCTTTGCTATCTTTTTTCATTTATATTAAGATATTCCATTAATCCCGCCTGTAATATTTGCGAAAAATTAACTTTGTTTTCCTCAGCTATTTTATTCAACCATGAAGGTATTGTCAATGTTTTTTTTACTGCTTTATTATCGT # Questionable array : NO Score: 5.65 # Score Detail : 1:0, 2:3, 3:0, 4:0.76, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.63, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAACATTAACATAGGATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.60,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-17] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 1 437925-437565 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACBCE010000003.1 Clostridium botulinum strain GiorgioA-KM21-1 3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 437924 30 100.0 37 .............................. TACAAGACTATATTGATAAGCATTAAGGTATAATTTA 437857 30 100.0 36 .............................. AGTTTATCTCATTTATTGATGCGGATTTGATGAAAT 437791 30 93.3 36 ........G......A.............. TGAACTTATAATATATAATGTAATTAAAGGTTAAGA 437725 30 100.0 35 .............................. TCTTTAGCGTCTTGATCTATACCTATATATTTAAG 437660 30 96.7 36 ..................G........... CCAGTTAATTTATCTATAACCTTAAATACCATATAA 437594 30 90.0 0 ...............AG............C | ========== ====== ====== ====== ============================== ===================================== ================== 6 30 96.7 36 GTTGAACATTAACATGAGATGTATTTAAAT # Left flank : TTTTTTGCAGTAAACATTTATGATACGATTGTTTTAGATATAGGTCTTTTTTGTCATAGTAAAAAAACTAGAATACCTGGTACAGAGGATATGGATAAAGAATATAGGAGTCCGTGGCATCATATAAAAGGGGCTGGTATTGGAACTATAATAGGTGCTGTAGTAGCATTATTATCTGGAGGAATGGTTCATTTTATATCAATAATATAGTATTTAAGCAGGGAACCCAAATCTACGATTTGGTGTGAGTCGCTTACTACTTCGAGAATGGGAGAAGTAGTTTCATTAATGAGTATAGTATATAGCTTATATATAATTGAAGTTTTCCAGGCGTAACAAATTTTAAAACCTATTCTAGCTATTGGTATATAAGGCTTAGAATAGGTCTTTATCATGTGCTTATGAAAAAACAAAATCACTTGGGAAACTTTTTCTAGAACCTTGTAAAATCAATGGTTGTATGATAATCTTAAAAATAAGGAATGGCTATTTTACTATGG # Right flank : AAATTAAAATCCATGATTTTTTCCCTTTAAATTTATTTAGTTTTTAGAGCAGCGTTGATAATATATCAATTTTTAAGAGAAGCCATTTTAGACTTCCCTTAAGTGGTATTTTATTTAATTGTATAAAGTACATTAGTTAAAACTTATTTTTTCAAATGTACCCTTTTCTATGTGTAATTCAATATCAATATCTGCTTTTTTATAACCTACTAATTTTATACGATTATTACCTTTTTTTATTGGTAAAGTTAATGATGTTGTTCCTTTCATAGTGGCTTTATCTGTATTTTCTACAAGATTAACAACCGTATTGTCAGGAGACATTAAAACGATTTTTGCCTTTCCACTTTTTACTGATAAGATATATGGAACTTTCAAATCAAAATCAGAACTACTTTCATATGTCCAAATAGTTCCACTTCCACTTAATTTCAACTTCCCTTTATATATTCCAGATTCTATGATTTCATCACTTTTATCTAATCCAAAAGTATCATATA # Questionable array : NO Score: 6.10 # Score Detail : 1:0, 2:3, 3:0, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAACATTAACATGAGATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-1.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [76.7-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 2 444856-444561 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACBCE010000003.1 Clostridium botulinum strain GiorgioA-KM21-1 3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 444855 30 100.0 35 .............................. TCTAAATCTTTTGCACTTGCTAATTTACCTTTTTC 444790 30 96.7 38 .................A............ TTAATATATTTACCAAGGTTTTATATTATCATACTTAA 444722 30 100.0 36 .............................. ACTACTGCAGTAACGGAATGTGGTGGCAAACCTAAT 444656 30 100.0 36 .............................. AAGGGTTCTCCACACTCTAGTTCTTTCATAAGTTCA 444590 30 90.0 0 .......................C....GC | ========== ====== ====== ====== ============================== ====================================== ================== 5 30 97.3 36 GTTGAACATTAACATGAGATGTATTTAAAT # Left flank : TTAAGCAGAGAACCCAAATCTGTGATTTGGTGTGAATCGCTTACTCCTTCGAGAAGAGGAGAAGGAGTTTCATTAAATAATAATTAGACACTTAGTATTTTAAGCTTAAGTATGATCTGAAAAGGTTGAACATTAACATGAGATGTATTTAAATTATTTACATTCTGTTATACCACAACATTTACAACATGTTGAACAATAACATAAGATGTATTTAAGCAGAGAACTCAACTTTACGATTTGGAGTAAGTTGTTTATTTCCTGTAGAGGAGAAGTATGAGACTCATTAATGAGCATAGTATATATATCATATCTAATTAAATTTTTCCAAGTGAATTTAAATTTAAAACCTATTCTAGCCATCGATATGTAAGGATTAGGGTAGATTTTTATTATGTATTTATGAAAAATAAGAATCGGTTGGGAAAATTTCTTTAAAACCTTGTAAAATCAATGTGTATATGCTATTCTTAAAAATAAGGAATGGCTATTTTACTATG # Right flank : AAGAAATGCAATCATCTGATTTAGAATAATCATTTATACATGGCAATAATTTTTTGCTTTATTACTTCTTGAGTTAAATTGTGGGATTTTATTGACTAAAATATTTTTAAAATATAGTTTTAATTTTGGTTGTGCTTTAAAGTAGTGTTGGAATTTTAAACCCCATTAAAAGAAGTTAAATATTTTCTTTTAATGGGGTTTATATAAATTGTAAGATACTAATTATTTAAAAATTTATTTAATGAATCATTATCTTTAAATAAGTCTTTTAAGTTACCGTATTTTTGTCCTAAATTTTTTCTATCATATTTATAGGATTCTTCTCCTATATTCTCTACATTAAATTTAATAATTTCAGCATTTGGTATAAGAGACAATAATATCACTGCATTCTTTTCTAAGAGTTCTTCAACTTTTTTGTCCTTCCAAAATTTATTATAATTTTCTTCCCCTAAATTTTTATTTGTTTTATAGTTAACGGTTATTTCATAGGGCTCTTT # Questionable array : NO Score: 5.92 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAACATTAACATGAGATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-1.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [76.7-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 3 445646-445136 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACBCE010000003.1 Clostridium botulinum strain GiorgioA-KM21-1 3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================================================================================================== ================== 445645 30 100.0 35 .............................. AAGGCAGTTATACAGGTTAATAGATTGGTTTTATC 445580 30 100.0 38 .............................. ATTTGTCCAAATAACAATATTTATCACCCCCTATTCGT 445512 30 96.7 36 ................A............. TTTCTATTTTCTTTAAAAAATTGCCTATCTACATTT 445446 30 93.3 37 ............T....A............ ATAGATAAACAACTCTGAAGATATGCTTTGCTTACCA 445379 30 76.7 118 .......CT......GAT..........GC AGAGAACCCAAATCTGTGATTTGGTGTGAATCGCTTACTCCTTCGAGAAGAGGAGAAGGAGTTTCATTAAATAATAATTAGACACTTAGTATTTTAAGCTTAAGTATGATCTGAAAAG 445231 30 90.0 36 ........T......GA............. TATTTACATTCTGTTATACCACAACATTTACAACAT 445165 30 86.7 0 ........A.......A...........GC | ========== ====== ====== ====== ============================== ====================================================================================================================== ================== 7 30 91.9 50 GTTGAACAGTAACATAGGATGTATTTAAAT # Left flank : TAAGGATTAGAATAGGTTTTTATTATGTATTTTTTAAAAAGCAGAATCACTTGGAAAAATTTCTTTAAAACCTTGTAAAATCAATGGGTATATGATATTCTTAGAAATAAGGAATGCCTATTTTACTATGATTGAACAATAACATAGGATGTATTTAAATTCTTTATATAGATGCATATCTTCTAATACTCCACCTGTTGAACATTAACATGAGATGTATTTAAGCAGGGAATCCAAATTCCTGATTTGGTATGAGTCGCTTACTCCTTCGAAAAATAGAAGAAGTAGTTTTATTAATGAACATAGTGTATATATAATTAAATTTTTCCAAGTGAATTTAATCTTCAAACCTATCCTACCCATTGAAATATAAGGATTAGGATAGGTTTTTATTGTGTATTTATGAAAAAACAAAATCACTTGGAAAAATTTCTACAAAACCTTGTAAAATCAATGGATATATGATATTCTTGTAAATAAAGAATGGCTATTTTACTATG # Right flank : AGAGAACTCAACTTTACGATTTGGAGTAAGTTGTTTATTTCCTGTAGAGGAGAAGTATGAGACTCATTAATGAGCATAGTATATATATCATATCTAATTAAATTTTTCCAAGTGAATTTAAATTTAAAACCTATTCTAGCCATCGATATGTAAGGATTAGGGTAGATTTTTATTATGTATTTATGAAAAATAAGAATCGGTTGGGAAAATTTCTTTAAAACCTTGTAAAATCAATGTGTATATGCTATTCTTAAAAATAAGGAATGGCTATTTTACTATGGTTGAACATTAACATGAGATGTATTTAAATTCTAAATCTTTTGCACTTGCTAATTTACCTTTTTCGTTGAACATTAACATGAAATGTATTTAAATTTAATATATTTACCAAGGTTTTATATTATCATACTTAAGTTGAACATTAACATGAGATGTATTTAAATACTACTGCAGTAACGGAATGTGGTGGCAAACCTAATGTTGAACATTAACATGAGATG # Questionable array : NO Score: 4.02 # Score Detail : 1:0, 2:3, 3:0, 4:0.60, 5:0, 6:0.25, 7:-1.39, 8:1, 9:0.56, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAACAGTAACATAGGATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:73.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [7-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [65.0-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.68 Confidence: HIGH] # Array family : NA // Array 4 459499-459659 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACBCE010000003.1 Clostridium botulinum strain GiorgioA-KM21-1 3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ================================ ================== 459499 33 100.0 32 ................................. GGTTACTGGCTTTCTAATACATATAATTAAAT 459564 33 97.0 30 ..G.............................. CTATATAAAAGCCATTGGGAATTTTGTTTA 459627 33 100.0 0 ................................. | ========== ====== ====== ====== ================================= ================================ ================== 3 33 99.0 32 TACATTTAAATACATCTCATGTTAATGTTCAAC # Left flank : GCAAGTTTCTATTTTATCTATAAATTCTTTACTCAATCCCCTAATATTAAAAATATATAATCTATCCTTTTTATAAAATTTGTCTCTTTCTATAGGATAAAAACTATTAAATACGTAATTTTTGTACTGTTTCTTTGGATGTATTTCCTTTAAATCTTTATCCAAAAGCATACTTTTATTTATGTTTTTCCCTATTATATATCCACAATCTTCAAAATATATATCTTTTTTTAACATCACTGTTGCAATCAGTTCACAAAATTCCATTTATGCACCTCTTTATACAAATTTATCTATATTATACCATATAGCCTTTAGTTAATATAACCGATTATTCTACTTTTATTTTAAAAATATTATTATCTTTATTAATGATAAGTTACTTACCTATCATATTCTATTCTAAATCTTTGCATAAAATAAAAGCCTTAGATTTTTCTAGGACTTTTAATGATTCTTATTATTCAACATATGGCTAATACTTTAGAAAATGTATTAAA # Right flank : CCATAGTAAAATAGCCATTACTTATTTTTAAGAATAGCATATAGCCATTGATTTTACAAGGTTTTAAAGAAAATTTTCCAACCAATTATGATATTTTATAAATATATAAGGGAAACCTACCTTAAGCCTTACATTTCAAAAGCTAAGATAGGCTTATAAGTTAAAATTGGCTGGAAAAATATTAGCGTATTCTATATAATTATTTGTTATTTTTATCCTAAAATAAACGTAATATTCTAAATGGAAATATGATTTACCATTTAATCCCTCTGTTTTTAATATAGATAATTATGATATAATATCCAAGTTAGGATAGTAATTCCGTAGTGGATGGCTACGGGGGTTTTGAATATTTTATCCTCCTAGGATATTGGTGAGTCTTTCACTTATAAATAGGAGGTGGTATTGGATATGCTAGAATTAACCATAAAAAGTTTTGTTGTAATTTATATTGTTAAATTAATTTTAAAACATAATCTTTTTATTTCCAAACTAGTTAT # Questionable array : NO Score: 5.31 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TACATTTAAATACATCTCATGTTAATGTTCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.76%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-1.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [78.3-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.37 Confidence: LOW] # Array family : NA // Array 5 460793-460565 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACBCE010000003.1 Clostridium botulinum strain GiorgioA-KM21-1 3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 460792 29 100.0 37 ............................. CATATTTTGTTCTACTTCTGAAACTGTTATAGGGTCG 460726 29 100.0 38 ............................. CTTGTTATGTTTTCCTTTTTCATATAAAATCACCTCTA 460659 29 100.0 37 ............................. TTCTTCCAAGAATTTATATTCATCTGAATACTCTATT 460593 29 89.7 0 ...............T.A.......G... | ========== ====== ====== ====== ============================= ====================================== ================== 4 29 97.4 38 ATTGAACATTAACATGAGATGTATTTAAA # Left flank : AATCGGATTTGCATTTAAAGAAGTAAAAGCTGGAGAAGAAAAAAGATTTGAGATAGTAATAACCTATAATAAAAAAATGTATATTTTAGAACTTAAAATATGGAGAGGTGAAGAGTATCATAAAAAAGGCTTAATACAGCTAGCAGAATATTTAGAGCAATATAAATTAGATAAAGGGTACCTTTTAATATTTGATCTAAGAAAATCCACAAATTTAATAGGAGAAGTAGAAGAAAACTATATAGGTATAGAAAATCATAGTAAAAAAATAATACAGGTTTATTGTTAAAAAGTATATAGCAGTTAAAAATTATTTCTAAATATTTTTCCAAGTGAATTAAAAATCTAAACCTATCCTAGCCATTGGAATATAAGGCTTAGGATAGGTTTTTATTATGAAATTTTAAAAAACAAAATCGATTGGAAAACGTTCTATAAAACCTTGTAAAATCAGTGCTTATATGATATTCTTGAAATTAAGGAATGGCTATTTTACTGTG # Right flank : AAAACAAATAACGATGAAAGGATAACAAATAATAATTAAGGTAGCTTTTCATTGACAAGGTTTTTCAGCATTTTGAAATTGAAAAATCAATAGCAAATATTATACAGAGAGGGAATCAATTGTAAGCAGTAAAATCTAATTTTATAGTTAGTTTTTTATAGAATTAGATAGTTAAAAAATTAAACATATAAATATGTGTTTATTTTTTATATAAATTTGATATAATATAAATAAGAAAAGCTTAGTGTTGGAGCACTAAGCAATCCTTAGAATATTTATTTTGTTTTAGGGCTATTGGATGAATTTAATAATTAAATTTGAGAGATTGAAGCACTATTCTTGGTCGGATGGGTGCTTTTTCTCTTTGCCATTAAGTTCTATGTGAATACCAAGAAATTTAATCTTGATAACTAGTTTGGAAATAAAAAGATTATGTTTTAAAATTAATTTAACAATATAAATTACAACAAAACTTTTTATGGTTAATTCTAGCATATCCA # Questionable array : NO Score: 5.73 # Score Detail : 1:0, 2:3, 3:0, 4:0.87, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGAACATTAACATGAGATGTATTTAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-1.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 6 463172-462868 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACBCE010000003.1 Clostridium botulinum strain GiorgioA-KM21-1 3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ===================================================================================================================== ================== 463171 28 100.0 37 ............................ ATGATTTTAAGCCTATGGATATAGAAAAAATATTAAA 463106 28 100.0 38 ............................ ATTATCCTTACCTATAGATTCCATTTTCTTTCCTACGT 463040 28 92.9 117 ........G.......A........... GCAGAGAACTCAAGTATTTGATTTAGTGTGAATCTATTACTCCTTGGATAGCAGGAGAAGGAGTTTCATAAAAAATTAAAGATTTATAGTTTTTAAAGTTAAGTATGACTTTCAAGT 462895 28 85.7 0 T...........T...A...A....... | ========== ====== ====== ====== ============================ ===================================================================================================================== ================== 4 28 94.6 64 GTTGAACATTAACATAGGATGTATTTAA # Left flank : GGACCTGGGATAATCAAGGAAACGTTGAGGATGTTGCAACAGGAAGTGCAGCTGGACCATTAGGTGCATATTTATATAAGCATAATATTTTTAATGTAGGTCATGAGATTATAATAAATCAAGGAAGATTTGTCGGCAGACCTAGTAAAATTAAGGTTTCTATGAGCATTTCTGAAAAAGAAATATTAGTGTCTGGAGAGGTAGCTATTTTGGCAAAGGGAACTATTTTACTATAATAATAAACGTAAAAAATCGCATTATTCAAGAAATTGAATTTGCGATTTTTTATTGCGCAATCCAAATATATTGTAAAGTTAACTGAATTTTTCCAACCAAAATAAATTTTAAAACCTATTTAGAGCGTTGACACATAAGGCTTATGGTAAGTTTTTATTTTATATTTGTAAAAAGCAAAACTACTTGGAAAAATTTCTTTAAAATCTTGTAAAATCAATGGTTGTATGATATCCTTGAAATTAAAGAATGGCTATTTTACTATG # Right flank : GCTTATAGTTAAATTTGTGGTTAAAGAGAACTCTTATTCCTTTAAGTATAGGATTAGGAGTTTTTTATTTTAATCTTAATTTAATTATAGTTTTGGCATATATTAAAGATACATTGAAAGTAAGTTAAGTTTTTTATCTGTATTTTCTTTATATGTTTAAATACATTATTCTATGGTAATATAATAGGATAAGGAGAGTGAAAGTTATATGAAAAAGAGATTTAATGTAACTGGAACCTGTATACCAGAGAAGCATTATATGGTAGATATATCTAAAAAGCTAGATAGCATATTAAAATTAATAGATAATGAAGAGTATTTTATTATAAATAGACCAAGACAGTATGGAAAAACAACTACATTATATATGTTAGAAAAAAGATTAAATAAAATGGAAGAGTATTTACCTATAAAAATAAGTTTTGAAGCCATAGACACGGAAGGATATAGTGAGGCTAAAAAATTTTTAAGTAGCATAATGATGCAAATAATAAATTACT # Questionable array : NO Score: 2.59 # Score Detail : 1:0, 2:3, 3:0, 4:0.74, 5:0, 6:0.25, 7:-3, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAACATTAACATAGGATGTATTTAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-1.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA //