Array 1 41-436 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYJP01001170.1 Salmonella enterica strain BCW_5825 NODE_1170_length_469_cov_1.94335, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 41 29 100.0 32 ............................. AATGATGAGGGGCTGGCAACGTTTAGCGCCAC 102 29 100.0 32 ............................. CTGGCCACTCAACAGGGAAATATCGCGTGCGC 163 29 96.6 32 A............................ CCCATCAAGATAAACATCATAGCGAGCACCTG 224 29 100.0 32 ............................. TTTGAAATCGCTATTCTTATTGCTGTAGCAGT 285 29 100.0 32 ............................. CGTTAACTAAAACGAACAAAACAGGGAAATCA 346 29 100.0 33 ............................. GCCGTGCGTCAGATCACCCCAAACGCTTTCTTT 408 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 7 29 99.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : ATAAACCGGCTGAGATAATTGCCGATCATCTTGAAGACATG # Right flank : GCATTAGATTGCGTTGACGGTCACGTTCTAGAT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [40.0-30.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 1031-635 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYJP01000958.1 Salmonella enterica strain BCW_5825 NODE_958_length_1031_cov_3.39979, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1030 29 100.0 32 ............................. GAGACGCCAGATGAATTCTGCGGGACAAGAGA 969 29 100.0 32 ............................. AACGCAGGAGAACCAGCCGCCGGTCATCCTGC 908 29 100.0 32 ............................. GTCTGACCAGTGGCGTGGGGGGATTGCAATTT 847 29 100.0 32 ............................. CGTGGCTGGAGCAATGAACAGATTAAAGGGGT 786 29 100.0 32 ............................. AAGCCATTGACGCAACGGAAAACGCCAATGCT 725 29 96.6 32 .................A........... GTATGATTTGGACATAGCTAATGATGTAAAGT 664 29 100.0 0 ............................. | A [637] ========== ====== ====== ====== ============================= ================================ ================== 7 29 99.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : | # Right flank : TTTCAACAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCTGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [51.7-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 2467-2983 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYJP01000519.1 Salmonella enterica strain BCW_5825 NODE_519_length_3021_cov_3.21974, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 2467 29 100.0 32 ............................. CGACGCTTCCATCGTCTGGCATTCCTGTTCGT 2528 29 100.0 32 ............................. CCCGCGTATTAACAACGACGAGCAGGGCGTGC 2589 29 100.0 32 ............................. GTTGCGCAGCCATTGAGCTGCAAACGGATCAA 2650 29 100.0 32 ............................. CGCCCCCCGCATACAGCGAGAGACGGGCCATG 2711 29 100.0 32 ............................. GCCCGAAATCAACTTGCAACATTTCAGTTGGC 2772 29 100.0 32 ............................. CATATGATTGACGACAATGAATTTTTTTTCAA 2833 29 100.0 32 ............................. ATAGTTCATCTCTGTTCTCCAGCGGTTTCTAT 2894 29 100.0 32 ............................. ACGGCATTATCACGGCTATTTCTCTGGAAATG 2955 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 9 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCACAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAAGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTATAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGA # Right flank : GACAGGACTTACGACCGGCTGGACTACGCATCGTGTTC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [70.0-26.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 3721-5578 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYJP01000242.1 Salmonella enterica strain BCW_5825 NODE_242_length_5826_cov_3.56238, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 3721 29 100.0 32 ............................. AACTTAACTCCAGCATTCTGGCAATTGTTGCG 3782 29 100.0 32 ............................. GCGACATCAAAATCTATTTTTCATTCTATCTG 3843 29 100.0 32 ............................. CTCCAGCCACATTGCGGCGCGACCGCTTTTAA 3904 29 100.0 32 ............................. CAATGTTTCATGCTACGCAAGAGACCAGAACG 3965 29 100.0 32 ............................. TGGTGGAGTGCCGAACCGCTACCGTTTCAAAG 4026 29 100.0 32 ............................. TCATGGCGTCATTCGGTACTGATATGCCAATG 4087 29 100.0 32 ............................. TCGTTTGTAGCCGAAAACCGGCTGGCGCTGAT 4148 29 100.0 32 ............................. TAATGAATCGCCTTTCTAAAATGAAAGACGAC 4209 29 100.0 32 ............................. GCATCGAACCGCTTATCCGTCTGTACCCACTC 4270 29 100.0 32 ............................. CTTTCATTGCGCAGGGTATGCAGTCGGTTTCC 4331 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 4392 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 4453 29 100.0 32 ............................. AATGGGATGTTCTCGATAATGGCGACGACGAA 4514 29 100.0 32 ............................. CGGTCATTTTAAAGAATCCCGTTAAACAACAC 4575 29 100.0 32 ............................. GACATTTCAGTTTTGAGCATGAACCTGATTCA 4636 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGTTGTTTAGTTCCT 4697 29 100.0 32 ............................. AAAACCGTACAACAGACAAAATATAAATATTG 4758 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 4819 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 4880 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 4941 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 5002 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 5063 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 5124 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 5185 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 5246 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 5307 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 5368 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 5429 29 100.0 32 ............................. GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 5490 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 5551 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 31 29 98.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATTGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTCCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTGATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //