Array 1 452520-450003 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHLQK010000004.1 Alkaliphilus sp. MSJ-5 Scaffold4, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 452519 30 100.0 36 .............................. AAAATAAGTACATCAGATTTATGAGTTAGTGTTTCA 452453 30 100.0 34 .............................. GTAATAATGTTAATATCATCAATCAAGATTTCTA 452389 30 100.0 36 .............................. CCGTTTTTCTGTGGGACTCTACAAGTTACATTAACG 452323 30 100.0 36 .............................. ACGGAATTTAAATGTAAATGTTGAGCTGAAACTATA 452257 30 100.0 35 .............................. ATAAATTTTTCTAATAATAAATCCAATTCTTTAGG 452192 30 100.0 37 .............................. TTTTTAATCATAAAGCTTATAGCTTCTTCATCAACTA 452125 30 100.0 35 .............................. TCGCATATTGGAGGATTTATAGGTTGTCCCATACA 452060 30 100.0 36 .............................. ATATATAATATTTTATTGTTTGGCCATGCTCCGATT 451994 30 100.0 36 .............................. ATATATAATATTTTATTGTTTGGCCATGCTCCGATT 451928 30 100.0 37 .............................. AGAAAAGACTAATACAATAGTAACTCCCTTAGATGTT 451861 30 100.0 35 .............................. TGTATACTCTGAGCAGTACCCAAAAGGTCAACTCC 451796 30 100.0 35 .............................. GACCTCCAAGAAATTTCTTGAATACGATCGTCATA 451731 30 100.0 36 .............................. GCCGATAGCCCTACCCGAAAGGGGGACAAATAAAAT 451665 30 100.0 36 .............................. ATTATTAGAATTTGGAGAAATTAAAAACTATACTCA 451599 30 100.0 36 .............................. TTGCTAAAGCAGACGAGGATCCAGTAACAGGTGAAG 451533 30 100.0 34 .............................. TACAAAAGCTGAAGAAGATAATATTCCGTTATTC 451469 30 100.0 37 .............................. TCCCAAGTCGCTACTACTTCTTCACCCCAAATAGGTA 451402 30 100.0 36 .............................. AAGTAGAGGTACATGACCCACCACCAGCTCCAGCAG 451336 30 100.0 36 .............................. CGTTCATTTATTTGCTTACGTTTTCTTTGCCATCTC 451270 30 100.0 35 .............................. GATTCTATTATAGTTATATGGTTTAAACTTCTTTG 451205 30 100.0 34 .............................. TTCGTAAAAATTCACTTAATGGTATTCCAATTAG 451141 30 100.0 35 .............................. GTATTAGCTATATTTTTATATGTGTAGTCTATTAA 451076 30 100.0 35 .............................. TTGGTCTTTTAGTTCTTGGGTTTGTTATGATTCTT 451011 30 100.0 34 .............................. GCGGAAAGGTTAAAGACCTTGTAAAAGCCACAAG 450947 30 100.0 35 .............................. ATGTATACAGGAGAAGAAAAGGAGTGTAGTGATCC 450882 30 100.0 36 .............................. AAGTATCGTTCAATTAATTCTACTGCTTTTTGAATT 450816 30 100.0 34 .............................. ACTATTTTAGATATTTTCTTGTTGTCCATTTCCA 450752 30 100.0 35 .............................. GGAGCAATAGGAGTATTTTCCTTGTTTCTTTATTT 450687 30 100.0 37 .............................. CTCCTAAACCCGAATTTCCTTATGCCTGTGCAAACAC 450620 30 100.0 35 .............................. CCACCTAAAGAAGATTAATTTAGTTAAAGAAACTA 450555 30 100.0 35 .............................. AAAAGCCTATTTGGAACAATCCTAAAATCAATTTT 450490 30 100.0 35 .............................. TCAAAATATCTATTTTCTTTAAGATTGATGTTTGA 450425 30 100.0 34 .............................. GTAGATTGTAATATTTCAATCATTTTCCCTATAG 450361 30 100.0 35 .............................. AATGCAACATGGGACAAAATTATAAAAATGAATAA 450296 30 100.0 35 .............................. TGTTAGCTACAGTCTGGAATAATAAGGGTGAGTTG 450231 30 100.0 36 .............................. ATAAGCTCTTCTAATTCTTGTCTACTTACATACTCC 450165 30 100.0 36 .............................. ATGTCTTCTAATTCTTTAAGTAATTGCTCTTCTTCT 450099 30 100.0 36 .............................. ACACCTTTATAATGTTTATTATAATTTTATAACATA 450033 29 80.0 0 .......C.....G.-....T...GA.... | G,T [450007,450024] ========== ====== ====== ====== ============================== ===================================== ================== 39 30 99.5 35 ATTGAACTATAACAAGAGTTGTATTTAAAT # Left flank : GGCTTAAATGAAGTTAAATAAAAACTATAATTATAACTATGCATTTGTATTTTATGACGTAAATCAAAAACGAGTAAATAAAGTATTTAAGGTATGTAAAAAATACTTGTCTCATTTTCAAAAATCAGTATTTAGGGGAGAAACAACACCGTCAAAATTGTTATTACTAAAAAATGATTTAAATAAAATAATAGATGAAACTGAAGATTTTGTTTGTATTATAAAGTTAATGAATGATAATGTTTATGGGGAAGAAATATTAGGTAATAAACAAAATGATACGGGAGAAGACCTAATATTATAATAATTTTATAAATAAAACATAAATTTACCAAGCGTTTTTTGAAACAGTTTATTTTAATACAGACTTTACAATATATTCAGCCATATTATTATTGAATAATATATTTTATAAAAGCACTTGGTAAAAAAATTAAAAAATGTTGATATTATAACGTTTTTTAATATCTAATTAAATTAAGAATAGCTAAATTGGTATA # Right flank : GATATAGGTAGGCAATTTAAAACAATAAAAAATCCACAATTATATCTAAAAGATATCTTTAAAGATTCCTTGTAAGGGGTGCTATAAGTAAAATTGGGATAATATCCTTAATCCATTACTAGTATTTTTTGAAGAAAGTTATAAAACCTTATCTATAAAATCTTATATAAATTAGTATGAGTGTGTAAATTAGAATTTTTCACATAATTTCCAATTGAATAGAATGTACACTTTTCATAGTAAAAATTATTGCCAAAATTATAAGACTTTATGTATATATAATCTTATAATTTTGGCAGACTAGAAACTAGAGTTATTGAGTTGTTATTTATGGATTCAATTAAGAAACTGTGATAACAAAATTTATTTTTCAGTATCATCGTATCCTAAAGCTATAAAATAATTTTTTATGATTTCTTCTAAACAATGAAGCTCAATTCCGTTTAATTTTGATAAGGATTTAGAAATATTATTAATATCAACTTGATTAATAACTCCCA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGAACTATAACAAGAGTTGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-3.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [81.7-83.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.37 Confidence: MEDIUM] # Array family : NA //