Array 1 28466-33173 **** Predicted by CRISPRDetect 2.4 *** >NZ_LNVQ01000017.1 Xanthomonas translucens strain LW16 flattened_line_31, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ====================================== ================== 28466 31 100.0 35 ............................... ACCTCACCAGCGGATTCCTATGGCCAGTACCTCTA 28532 31 100.0 33 ............................... CAGGCCGCGCACCAGCCCGTCGCGGGTGGCATC 28596 31 100.0 33 ............................... TTTCGCTCCTTAATGGTGTCGCTCATCTTGCGG 28660 31 100.0 36 ............................... TGCATCCAGTACGCCGACAACTCTGCCTCGCCAGGC 28727 31 100.0 36 ............................... AGTTCCTGATGCAGAATCCTCTGTGTGTGTACTGTG 28794 31 100.0 34 ............................... CAATGAGGACCGCCGCCCACGACATGCCACTCCC 28859 31 100.0 35 ............................... TTGCGATCCTGGACGTTCATTTTTTGCCTCGGTGT 28925 31 100.0 35 ............................... TCGCTGGGTGCGCAGATCTTCGATCGCTGGGAATC 28991 31 100.0 34 ............................... TCGAGGCGCAAGGACATAGCTTCCAAACTCACTG 29056 31 100.0 35 ............................... ACTGATCCCACACCAACCGACACCGAGGCAAAAAA 29122 31 100.0 33 ............................... AAGGTGGTCTACGTCAACATGCCAGGCACGGCC 29186 31 100.0 35 ............................... AGCGTGAACAGGCCATCCTTTCCTGGGTCCTTGCC 29252 31 100.0 34 ............................... ACCATTTGAGTACCCATGGCCGGTCGCCGTAAGC 29317 31 100.0 35 ............................... CTGCCAGGTCTAGCAAGATGGTGGAGAATACAGGG 29383 31 100.0 35 ............................... AAGTTCGGTGAGTTCCGGATTGGTGGGTGGCGCTG 29449 31 100.0 34 ............................... CAAACTCACTGATCTGGAGGCAGCCGGCGACCTA 29514 31 100.0 34 ............................... CCATATGCCGCAGCAGACAATTCCGCTGTTCGGG 29579 31 100.0 34 ............................... TCATGATCCACAACACTTGGCTGACGTACTCGGG 29644 31 100.0 37 ............................... CTTCGACCGGGAGCTCCACAGGGGCCGCCGGCGGCGG 29712 31 100.0 34 ............................... TACGAGTACGTCGCCCGCTTGATGTTCAACCCAC 29777 31 100.0 34 ............................... TATGGCACCCGTAGCGAGGCGGTGGGTATGTGGG 29842 31 100.0 36 ............................... CGCTGCGACATTGACGCAGAGAAGCGAGTGGCGCTT 29909 31 100.0 34 ............................... CCCGTATTACTGCGTTTCGAAGCGCACGTGATTA 29974 31 100.0 36 ............................... AACCTGCCGGACATGCGCGGCGAGTTTATCCGCGGA 30041 31 100.0 38 ............................... ATTTCGTCGTCCCGTGCTGTTGGTGTGGGAGTAGAGTC 30110 31 100.0 35 ............................... CCTTCCCCGATGATTGGCGCAACAGTTCGCCCATC 30176 31 100.0 34 ............................... GACGTATTGCGCTGGTGGTCGAAATCGATCACCA 30241 31 100.0 35 ............................... AACCCGTTCGCCAAGGACGGCCGCACCCATCGCTA 30307 31 100.0 36 ............................... GCGAACTGCTCGAAGTGCCGACGGAAGGCGATATCC 30374 31 100.0 35 ............................... AAGTATCGTCACGAACCAGCTGCGTGCTTGTAGGT 30440 31 100.0 35 ............................... CTGGAAGGCTGCGTCATCAAGCGCCTGACCCGCCA 30506 31 100.0 35 ............................... CAGGCATGGGCCTGACGCAGGTAACCCGCGCCGAG 30572 31 100.0 34 ............................... GCGATCCAGACCCCGCGAATCGCGGTCTGGCTCA 30637 31 100.0 35 ............................... TTGCTGTCGGCGGGGTTACTCCTCACCCGTAGCGC 30703 31 100.0 34 ............................... GGCGAAGATCGCGGGGGGTAAATTTCGGGATGCC 30768 31 100.0 35 ............................... AGTCAGTGCATTCCGGATTTCGTTTTGAATCGCGT 30834 31 100.0 34 ............................... TTTTGCATGAGCCGCGGCATGTAGTCCGCGGACG 30899 31 100.0 34 ............................... CAGACCGGCGTGCACACTGCGGGCATCGGCTACG 30964 31 100.0 36 ............................... AACGCAGCCGGCATCAAGGCTGCGCACCTGGACGGC 31031 31 100.0 35 ............................... TCTTAATTGTTAAGTTAATTTTTGAGGCGGGGCGA 31097 31 100.0 34 ............................... CGGTGTGCTGGCGCTGGCGTCACACACCGGATGG 31162 31 100.0 34 ............................... CTACGGCCTTCGCACGGCCGCGTGGTCGAAGTGC 31227 31 100.0 36 ............................... TTTTCCCAAATCGGCTGGATTCCAAGCGATTTCGGG 31294 31 100.0 36 ............................... AGTATTGCAAAGGTAATGCGGCGGACGACGGAACCG 31361 31 100.0 35 ............................... CGGCGGCGGGGTACTCGGCCCGCTGACGAGTTTCC 31427 31 100.0 35 ............................... TACTGCGCGGCGATCCCTGTGAAAACGGGCGGGTC 31493 31 100.0 35 ............................... CCGTCCAGGTGCGCAGCTTTAATGCCGGCCGAGCT 31559 31 100.0 36 ............................... ATGACCGCGTGGATCGCGCGTTTGCTTGGAGCGACT 31626 31 100.0 35 ............................... AGCAGCGAATAGTTACTCAGGTCTTTCGGGTCCAT 31692 31 100.0 36 ............................... AGGCGCCACACAGCAAGATATAGCCCGTGAGTTCAG 31759 31 100.0 36 ............................... CTGGCCCTGATCGCGCAACGCCAGCCGAAGGAGAGC 31826 31 100.0 34 ............................... TTTTTGTCCGGATACCAGTTGCGCGGACTGCAAG 31891 31 100.0 35 ............................... ATGGGAAGGCGATGGAATCCTACCCGGCCATGGTC 31957 31 100.0 34 ............................... TTGACCATGCCGCGAAGCATGGCCTGATCCAGCC 32022 31 100.0 35 ............................... TACAGCGCCCAGCGGCTGGCCAAGCTGCAGCGCGC 32088 31 100.0 36 ............................... GCCTATGCCGTCGTTGCTGGATGGTCAGTGCAGGCC 32155 31 100.0 35 ............................... TTCTACAACCTGTTCCTGATGCTGGAATCGCTCGG 32221 31 100.0 35 ............................... TTTCTCGGCGGCGATCACTGCCTGGCTAAACTTCG 32287 31 100.0 36 ............................... GGGAAACTCGTCAGCGGGCCGAGTACCCCGCCGCCG 32354 31 100.0 35 ............................... TCTGCACTGGCGTCGATCCAGGCGCGGACCTCATC 32420 31 100.0 35 ............................... TCGATGCTCATATTCTTACTCCTCGTTTCTGCCCG 32486 31 100.0 34 ............................... AAGACCCTGAAGATCGTTGACGCCCCGGGCGGCC 32551 31 100.0 35 ............................... CTGTTCGGTCGTACGATGCTGCCCACCTGCAACAG 32617 31 100.0 35 ............................... GGCTTCGCGCCGCTGGTGCCGACCGTTTCGCGCCT 32683 31 100.0 33 ............................... AGCGCCGGGAAAGTGGTTTTGACGACTGGGGAT 32747 31 100.0 36 ............................... ACGGAGGCGCTGCTAGCAAGCATGCGCATGCCGCTG 32814 31 96.8 35 ..A............................ AGAAATATGTCGGAAGTGTCCATTGACGCGGTTGC 32880 31 100.0 34 ............................... TCAGCCTGCGTTGCTTCCCGCAAGTTAGAGACCC 32945 31 100.0 35 ............................... TTTGGCGTCAGGTTGAGCACGAACTTGTCTGGGTC 33011 31 100.0 34 ............................... TGGTGCGACTCTATCAGCTGCCCCACTCATCAGG 33076 31 100.0 35 ............................... ACCCATGCCATGTCGTCCCGGCGCCACTCGACATC 33142 31 87.1 0 ......CG.......C.........G..... | C [33167] ========== ====== ====== ====== =============================== ====================================== ================== 72 31 99.8 35 GTCGCGTCCTCACGGGCGCGTGGATTGAAAC # Left flank : ATGAAAAGGCCGCCGCGCCATGATGGTTTTGGTCAGCTACGATGTCAGCACGAGCTCCCCCGGCGGCGAAAAGCGACTGCGCAAAGTCGCCAAAGCCTGCCGTGATCTCGGCCAACGCGTGCAATTCTCGGTCTTCGAAATCGAGGTGGACCCTGCACAATGGGCCGCATTGCGGCAGCGCTTATGCGACCTGATCGATCCAGGCGTCGACAGCCTGCGCTTCTATCAGCTCGGCGCGAAATGGGAAGCCCGCGTGGAGCACGTCGGCGCCAAGCCCAGCCTGGACCTCAAAGGCCCACTGATCTTCTGACGCGAACCGCAAGCGACCGGGGAAAGCCGGGCAGGTTCGCGCAACAAACCAAGTCATTGATTTACAAGAAAAACACTAACCTCTTCCGCTCACTACAGGTCCGCGGCGGCCCAATTCGATTGCGTCTCCGAAGGGTTCCGCAAAAGTGCGGACTTTTTTCCAACACCCATCAGCACTTATGCTCAGGGCG # Right flank : CTGGCCTGGCGACGATATGTCGTTCTATCGCCTTTGCCCACAAAAAAGGGCGCAGTCTCGCGACTGCGCCCAGCGTGCCGCGCCGGCCGGGAGAGAGTCGGCTGGCGCGATCCGTGACTGCGGTGTGCTTAGCGGGACGCGATGCGCATCACTTGACTTCGAATTCCTGCACGGTCCCGGCCGGCTGACCGTTCACGGTGACCTCGGCCTTGTACTTGCCCGCCGGCCAGCCCTTGGCGTTGGTGAAGGAGATATTGGTGGTTTCCGCACCGGCCGTGGTCAGCGTCGCGCTCTGCTCGCCGGCGGTCTGGCCGTCCTGGAACAGCAGCTTGGCGCCGACATTGGTGGTGGTGGAGGAACCCTCGGTTTTCACCGAGACGATGATGGTGTCCTTGCTGCTCAGCGTGCTCAGCGGCGCCACCGTCTTGTCGGCGCCCGCACTGTTGCCCACGGTCACCGAGGCGACCGTCACCGTGCCGGCAGTGGCCGCGGCCGGCGCC # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGTCCTCACGGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCGTCCTCACGGGCGCGTGGATTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.30,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [48.3-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //