Array 1 36366-36198 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADPDY010000008.1 Eggerthella lenta strain J1101653_170612_H2 NODE_8_length_141324_cov_48.5402, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================== ================================= ================== 36365 34 100.0 33 .................................. AGCTGCATCTGGGGGTACATGAGGCATGCCGAC 36298 34 97.1 33 ............C..................... CTCGAAACCTCCGCCCGATCTCTAGGGGCCGGC 36231 34 97.1 0 ......T........................... | ========== ====== ====== ====== ================================== ================================= ================== 3 34 98.1 34 GTCGCACCCTCATGCAGGGCGCGGGGATTGAAAT # Left flank : GAGGGTCGCGGCAAGCTCAAGATGATGCGCATCTGGAACATCTACTGCTTCCTGTGCTGGTACGAAGTGTTCTTCGGGAAATCGAGCGAGCAGCTGAAGCCGAAGACGCAGGTGGCGTAAAGCGAGTACGTTGGGATGCGCGAACGCTCGCGCTCCTTCCTGCCTGCTCGTTCATCGGCTTTTTCCCTGCTCGTTGATTGCGGGGGAAGCTTTGGCTCTGGCGATGGTCGGGCAAAGTATCAAACGTCGACAATCTTTGTTCAGTAGGCACCCTTTTCGTTGCATTCGTGATGACGGCGGGGGCCTTCTTTGCGAAGAGCGGCGGCGAAGGATGCTGCAAGTTTGGCCGAGCGCGAATCGAAAGCGAACATGATCGATGCGGGAGGTTCGCACCCGATGCGGGATCGATTCGATCGTCGAGGTTAAGGCAGTGCGGTTGGCTACTTGCGCGGAATGCAAGATATTGTGCTCGATTCCTTCTCTATGCCATAATCATTGCG # Right flank : ATCGACTCGTAGTTGAGAACCTCCGTCGGCATCGGCCGGAGCGCGCGCTTCGCTGTGGGTGTACGGTTTCCACTCTTCGTGTGCAGCAAAAACGAGGTTTTGGCTGTCTTGACCGCTTGGGACGACGTGTTTTCGAGGTCGGGTGCCGTGTTTCCGGGGCGCGGTCGAGTGTCATCTGGGGTTTTGCCGCGGTGCCGTCTCGGGTGCGAGGACTCCTCGTGCCAAAACCTCGTTTTTGCTGCACATCGCCTTGTGAAAACGTGCGGCGGGGCATTTTTCAGGCAGCTGTGGGGGCGGGTTGGGCGCGAAACGGCTCCCATGACAATCGCAAGGCGGCTTCGACCTGCTTTGACGCGCCTTATCGCCTCATGCGGTCGTATGATCCCAGGTGACGAAATCCACGTGCGACCGTCGATACCCGACTCGACCGCCGAAACTGTCATAGGAGCCGTTTCGCGTCCAACCCGCCAACCGCCCGCCAACCCGCCAACCCGTCGACG # Questionable array : NO Score: 8.57 # Score Detail : 1:0, 2:3, 3:3, 4:0.90, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCTCATGCAGGGCGCGGGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACCCTCATGCAGGGCGCGGGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-7.10,-7.30] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [35.0-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,10.05 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 32069-28480 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADPDY010000036.1 Eggerthella lenta strain J1101653_170612_H2 NODE_36_length_37740_cov_43.4511, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ====================================== ================== 32068 33 100.0 36 ................................. GAGCGGGACTGCGCCGAGGCTGTCTACGACGCCAAC 31999 33 100.0 32 ................................. CCAAGCAACAGGTCTCCCAAGCCGAGATCGAC 31934 33 100.0 36 ................................. CAGCGGCGCTGGCATGGATTATTGCGACTTGGGCAC 31865 33 100.0 33 ................................. CGAGGAGTTTCGCCCCTATCGCGATCCGTCCGC 31799 33 100.0 35 ................................. TTCCTGCACGCAGAGGGCGGGCCGCGCACGTGGTG 31731 33 100.0 33 ................................. TGCACACCCTTGCCGAAGATGCTCAGCATCGGG 31665 33 100.0 35 ................................. ACGTTGACCTACGCTGAGAACATGCAGGACAATTC 31597 33 100.0 34 ................................. TCGGCAAATCTGGGACGCTGGAAGCCGCTGAGGC 31530 33 100.0 35 ................................. GAGCTCAAGCTCAAGAAGTGGCGCAAGCAGACCTC 31462 33 100.0 36 ................................. CGGATCGTACAACACGGCAAGCGCGCTGTGGGGCGC 31393 33 100.0 37 ................................. TTGCCGACGTGCTGGACGGCTACAACCGCACCCACGA 31323 33 100.0 33 ................................. AGCCTCTTTTCGCTCGTCGCGTTCGTCGAGCTG 31257 33 100.0 33 ................................. TAAACGAACTTGAACAGACGCATTTTGATAACC 31191 33 100.0 32 ................................. GAGTTCGTTACCGACACGACCGGCCTCATCGG 31126 33 100.0 34 ................................. GAGCTCGCCTGTGTACCCGTCGTTGGTGACGATG 31059 33 100.0 34 ................................. ACGTTGCCCGGATCGAGCTTGAGCGCGCGCTCGA 30992 33 100.0 34 ................................. ACGTTGACCTACGCTGAGAACATGCAGGACAATT 30925 33 100.0 32 ................................. AGCCCTCGCTCGCAGCCTCGTAGCGAAGCCTG 30860 33 100.0 34 ................................. AGCATCTCGAATTTCGCGGCGAGCGATTCGTTGC 30793 33 100.0 35 ................................. AAGGCCGCCAACGCCAAGTACAGCCTGGAGGAGAC 30725 33 97.0 33 ........T........................ AAAGCAGTCATCACAACGAGAGAAAGGGGCATC 30659 33 100.0 34 ................................. ACGTCGTGTCTGAGCATCGACATCACAACGTCTT 30592 33 100.0 32 ................................. ATTGCCGTTTTTCAAGGCTGGTAGCAAGCAAG 30527 33 100.0 34 ................................. GTGCCGGCAGCTCCCGCAGCAGCGGCCCCTGCGG 30460 33 100.0 33 ................................. AGGTACGCGCGCGCCCTTCTCGGTCTTGTAGTC 30394 33 100.0 35 ................................. TCGACGACGGCCCTCACGTCGTCGATGGTGCGGCC 30326 33 100.0 34 ................................. TATCACATGGAGCGGACGAGGTTCTCCGCGCGAG 30259 33 100.0 34 ................................. ATCTTGGGCGTGCCGGGAGCGGGCAAGAGCTTCA 30192 33 100.0 34 ................................. ATGGCGAGTACTTGGACGTAGTTGACGGTCGCCG 30125 33 100.0 35 ................................. GACTTGGCGTCGGCCGCGGCGCCGGACAGCGCCTC 30057 33 100.0 33 ................................. GACAACGCGATGGCCAAGGTATCGACCATCGCG 29991 33 100.0 35 ................................. CGCTCGCAGCATAACGAAACGTTGGCTACAGCCGC 29923 33 100.0 35 ................................. ACGCACTCGTAGACGTCGGCCGGGGTGTAGCAGTC 29855 33 100.0 36 ................................. AATGAATCGATCAAGCGCGCCAACGGCGAACTCACC 29786 33 100.0 34 ................................. GAAACCGTGCGCGACGGCGGAAGCAAGCTGGACG 29719 33 100.0 33 ................................. CGCGCCACAGAAGGCGCACCTTGCGGGTATCGG 29653 33 100.0 33 ................................. GGAGAAACATATAAAAAGGACGGTGTAATCTCG 29587 33 100.0 35 ................................. CAGTTGATGTCTTTTCGCAGGTCGATGGCGCACGC 29519 33 100.0 34 ................................. AAGCCGACGAATACGCCGGCGAACGCCATTCAGC 29452 33 100.0 25 ................................. AGGCCCTGTCGGCCCGGTCGGCCCT Deletion [29395] 29394 33 90.9 34 ...GGC........................... ATGTCGGCCTTGGTGAACTCGGACAGGTCGAAGC 29327 33 100.0 33 ................................. ATGCTACTAGACGATTTTTTTGTTCCGAAATTG 29261 33 100.0 35 ................................. TAACAGACCGAAGCCCGTCCGGGCGGGTCGAATAC 29193 33 100.0 35 ................................. CATGTGTTGCGTCCTACCGCGTCACTGATGATGCC 29125 33 100.0 34 ................................. ATCGTGTGCGGGACGAACGACGACAAGCTGGACG 29058 33 100.0 34 ................................. GAGGACGGTGTGGATCCATTACGACATCACCGGG 28991 33 100.0 37 ................................. GAAAAGCTGCACCGGCGTGCCGACCGTGATGCCGTTA 28921 33 100.0 36 ................................. GGCACTGACGTGAACGAAAGCGTCAAGGCTGCAAAC 28852 33 100.0 33 ................................. CCCACCGCGATCACCCAGAACGTCGAGTACCTG 28786 33 97.0 33 .............C................... ATGTCGGGGAAAAGGCGCGAACCCATGTAGGCG 28720 33 100.0 38 ................................. CAGGTAGGCGTTGACGGCCTTGTCGTTGGCCTCGGCCA 28649 33 90.9 36 ..T...T...................G...... GGCACCGCGGTGTACTCCGTGCTCGAGAACGCGCGG 28580 32 93.9 34 .................-..............C TGTTCGGGTTGGCTGGCAAGCTGAACGCTGACAC 28514 33 75.8 0 .....GTT.A..T.....C.C..........G. | C,T [28498,28510] ========== ====== ====== ====== ================================= ====================================== ================== 54 33 99.0 34 GTCACTCCCCGCATGGGGAGTGCGGGTTGAAAT # Left flank : TGCGCGGCGATCTAGATGGCTACCCGCCGTTTCTATGGAAGTGAGATGGTTGGCATGCTGACAGTGATTACCTACGACGTGAATACCGAGGATCCGGCGGGCCGACGTCGCTTGCGAAAAGTGGCGCGACATTGCGTCAATTACGGTCAGCGTGTCCAGAACTCAGTGTTCGAATGCGTTGCCGATGCTGCGACGATGGTTCGTATCAAGAGCGAGCTCGTCGAGCTGATCGATCCGGAGAAAGATAGTTTGCGATTCTACAGTCTTGGAAGCAAATATGAGACGAAGATTGAGCATGTAGGTGCGAAGCCAACGTACGAAGCTGAAGGGTTCTTGGCATTGTAGGACCATGGTGCGAGCACGAAGCTCGCATATGACATACGTGAGGTTCGCACCAAATAGTGTGACATAAAGATGCCTGACGCGCTTGTTGCGTGTACCTTGTTTGTCTAATGACACTATATGTTGATCGAAGCAGTAAATTTGCACATAATATTGCG # Right flank : CGCGCGCAGCTGTCGTGGTACGGCCGAGGCGTGGTCGGTCGTACCCCTCGCGGGCGCGCGGGTAGAAGCAGGGTATCCGGGTTGAAATCGAGCAGCGTTTCGGCAGGTTCTGTCGCTCCCTAACGAAGGGGCGACCGATCCTTGCCGTCGCTTCCTATCGAGAACGCGGATTGATTCGCTGATTCCGAGTTTTGCTCGTCGGACGTCTGCGCCGAGTTGCGAAAGGCGCAGACGTCCTTCGGATCGCTACTCCACCACCAAATCAACGAACTCAAACGTCGTGCAGTCAACCAGGCCGCGGTTCGTCAGGCGCAGTTCGGGCAGGCATGCTAGCGGGATCAGGGCCATCGTCATGAACGGCGACGGCATGGTGCAGCCGATCTCGGCCCATGCGCCCTCCAAAGCATGTACCTTCTCGCTCATCGTTACGGCGTCGAGCGAGTCCATCAAACCGGCGATAGGAAGCTCCACCAACCCCAGGATCTCCCCGTCGGCGACCA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.00, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCACTCCCCGCATGGGGAGTGCGGGTTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCACTCCCCGCATGGGGAGTGCGGGTTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.20,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [36.7-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //