Array 1 55185-52078 **** Predicted by CRISPRDetect 2.4 *** >NZ_RQYN01000001.1 Tannerella forsythia strain OH1426_COT-023 scaffold_0, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================================== ============================== ================== 55184 47 85.1 29 ..AAG.G.AC......................G.............. AAAATCAATCGACTATGTAGCATATGTTA A [55176] 55107 47 100.0 30 ............................................... CGCACGTTATCGAAAGCGTGTGCGAGTTTC 55030 47 100.0 29 ............................................... TTGTATAAACGGCTTGATAAAGCACTGCT 54954 47 97.9 30 ..............................A................ TAAGGGTGGAAAACAGTTGAATTTAGCAAG 54877 47 100.0 30 ............................................... CGATCGCCGTCGATCCGGATACCGGAAGGC 54800 47 100.0 30 ............................................... GCGAGAGCCTGCGATCCTACAAGCGCAGAG 54723 47 100.0 30 ............................................... GAAAAGCCGATCGCGAGCATGACGTTTGCG 54646 47 100.0 29 ............................................... GATAAAGCACAGTTATCTTTGGAAGCTAA 54570 47 100.0 30 ............................................... TCCGGACTCCCTATCCGGCTAAGGTGTCTA 54493 47 100.0 30 ............................................... CGGGCTGGGTATAGAAGCAATCGAAAAGGG 54416 47 100.0 30 ............................................... ATACCATTCCGAATTGTCTTTCCCGGAGTT 54339 47 97.9 30 ..............................A................ TGAGAACGAGATGAGTACATCCTGCATTCC 54262 47 100.0 29 ............................................... ACGACGGAAAAGGAAGCCGAGATGCTGAA 54186 47 100.0 30 ............................................... AAAAATGTCTGCTTATGCCGCAGGCGTGCA 54109 47 100.0 30 ............................................... TTCATTCGACGAGCGATGGAGTTGAGGTCA 54032 47 100.0 29 ............................................... ATCGGAGACAAGCTCGCGACAAAAGCGTG 53956 47 100.0 29 ............................................... TTATGCTACAAATATAGTAAAACTATCCA 53880 47 100.0 30 ............................................... GCTATGCGACCGATTTCTTCGGGGGCTACA 53803 47 100.0 29 ............................................... TCGTGGAAATAATAGGAAACTCCGTCGGT 53727 47 100.0 30 ............................................... ACGTGGGTATCGGTCTTCTGGTACGGCGAA 53650 47 100.0 30 ............................................... CGGCGACTGCCGTGCGCCGACGGCGAAGAA 53573 47 100.0 30 ............................................... AGCATGTTTATCAAGGCGGCTGTGAAGGAT 53496 47 100.0 27 ............................................... CCCCATTTAGACCGGAAATATGAAATA 53422 47 100.0 29 ............................................... GACGATCAGTGCGGATAAAATAAACCTGA 53346 47 100.0 29 ............................................... TTTCTCATGTTTTGGATACACCCCTTTTC 53270 47 100.0 30 ............................................... TCCCCCGGCTGGAGGGCCACATGGTCACGT 53193 47 100.0 30 ............................................... TTCGTTTTGCGGATTGTAATGAGAGCAATA 53116 47 100.0 29 ............................................... ATCTATTATACATGAATATGCGGACTGAG 53040 47 100.0 30 ............................................... CACGTCGCAGGCAGGCCGCAAAGCCGACCG 52963 47 100.0 29 ............................................... ATTACAGAAGAAACCTGTAGAGAAATCAA 52887 47 100.0 29 ............................................... AGGTGTATGCGCACGTGTATATCGATGAT 52811 47 100.0 30 ............................................... CGAAGAGTTTATTACACTTGCCAGAGGCAT 52734 47 100.0 30 ............................................... GTTTAAGATTGAAGTAAAAACGAACAGGGT 52657 47 100.0 30 ............................................... ACGTGGCGCGAAATTATGCACAAAGTGCCG 52580 47 100.0 29 ............................................... CGGCGGATTTCGTGTACAAGCGTTCGACG 52504 47 100.0 29 ............................................... TACATACGCTGCAAAGTCAATGTTCTTTT 52428 47 100.0 29 ............................................... AGCTAATGCTCTTGATAAGCTCGACTGAT 52352 47 100.0 29 ............................................... AGGTGTATCGACGAAAGAATATGTCAACA 52276 47 100.0 30 ............................................... AACGACGCCTATCAGGTGTCGCAGGAAGCA 52199 47 100.0 28 ............................................... CTTAGAGAAGAAGGAGTAAAAGCGTCGG 52124 47 100.0 0 ............................................... | ========== ====== ====== ====== =============================================== ============================== ================== 41 47 99.5 30 GTTGTGATTTGCTTTCAAATTAGTATCTTTGAACCATTGGAAACAGC # Left flank : AAAGATATACAGTCCGAACTTTCGGAAATGACCGTAGAATCCGTCGGCTACCTTACGCACCTTACTCCTGATGATGCGCTGCAAAGGCAGAGCCGCCGCCCAATATTCGTATTCCATTCGCCCGATAATCGTATCGTCGATGCCGTATCCGTACCCGTATTTCGTCATGTCCATCCAGTCTTCTTCCGAGACCTTCATCACCGGACGTCCGGCTATTTCGTTGATCAGCGCGTGCGCCACGTCACGGTCTTCGCGGATGGCTCGTGTCACCTCGATGCCGATGCTACGTACTTCGTCCTGCAAATCCGGGCGGTCGTAATTCTTTAATGCCTCGAAGCGGTCGTCCACCAAGTCGATCAGCGATTGGCGGGCATACCGCTCAAAAAATGTCGTATCGTATTTCGTTCTTCTTCGTTCCGTCATGACACTGAAATCAAAATCAATCGGATTCCAAAGATACGGTATTTAACGGTATCCCGCAAACGCCCGGACAAAACGAT # Right flank : ACATTTTAAATAACGAAATGTTTTTCAATGAATTAAAAAGTATTTCAGAAAAAAGAAAAAGACGGGCGTTCCTAGTACAAAATCTCGCATTAATGCGAGATTTTGTTTTCTAGAACAACTCCAATTGCTGTCCCGGTGTATTGACATCTTGCACTTTTTTTCCATAAAAAAGTTCTATATTCCCAAATTGTTTGTCTGTAATACACATGATTCCGACATGCCCAAATTCTGGAAGAAAAGATTTAACTCTTTTTATATGTACTACAGCATTCTCGCTACTAGCACAATGACGTACATAAATGGAAAACTGAAACATCGTAAAACCATCCTTTTGCAAATTCTTTCTGAAATCCGCATAAGCCTTCTTTTCTTTCTTCGTTTCAGTAGGCAGATCAAAAAGAACAAGCACCCACATAATTCGATATTCACTAAAGCGATTCATAGTCTATCGTTCAGGATAGGCAATTCTCCGAAGCTCTCCACTAAAACATTTATAAAGT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGATTTGCTTTCAAATTAGTATCTTTGAACCATTGGAAACAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:65.96%AT] # Reference repeat match prediction: R [matched GTTGTGATTTGCTTTCAAATTAGTATCTTTGAACCATTGGAAACAGC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.40,-2.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [83.3-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [1.05,4.5 Confidence: MEDIUM] # Array family : II-C [Matched known repeat from this family], //