Array 1 145395-146522 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFCNM010000023.1 Escherichia coli strain 8563 23, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 145395 29 100.0 33 ............................. TCCGTGCCGTATATCAATTAGATGAAGTCTGGC 145457 29 100.0 32 ............................. GCATTACGGTAAATCGCTGGGGCTGTCCCGTA 145518 29 100.0 32 ............................. CTGGGGCTGCACATTGACAATAAACCGCCGCC 145579 29 100.0 32 ............................. ACTTGATTACCGCTATTTTCTGACGATTTAAT 145640 29 100.0 32 ............................. CCTGATAATTTACGCTATTCAGCGGAGATGAT 145701 29 100.0 32 ............................. TGGCTATAGTATCATATGATTTCTATTTGTCA 145762 29 100.0 32 ............................. CGGCTTGTTTAATTGCGTGGAACGTCTCAATT 145823 29 100.0 32 ............................. CCGCCGATTTCCCTGGCGTCAAAAGCGGTGAG 145884 29 100.0 32 ............................. CTCTTTCTCAGTCATCTGGCGCTCAACGCCGG 145945 29 100.0 32 ............................. GCAGCAATTGCCGGAGTTTTACTAATTGCCTC 146006 29 100.0 32 ............................. TTTTGATTTCATTAACGGCGCTCCCCATATTT 146067 29 100.0 32 ............................. ATACAAACGCGGTGTTTATCAATATGAATTTT 146128 29 100.0 32 ............................. GCACCACGCGTACCCCGATGTTTGTTTTGCCA 146189 29 100.0 32 ............................. GCTCCCTGTCAGTTGTAATCGATAACGTTGAT 146250 29 100.0 32 ............................. ATGTAGGGGCAATCGAACGATTCTCTGCCGAC 146311 29 100.0 32 ............................. TCGAAGAAGAAAGGGAAATAATGCGAGGAACG 146372 29 100.0 32 ............................. TATTACGCGCCAGCAATGCTGACAGCGGCAAA 146433 29 100.0 32 ............................. CGCGAGAGCCAGCAAAACGCCAGGGCACAAAA 146494 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================= ================== 19 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTATTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCTTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTACTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACCCCTCATGTTCAAAATAGTTCTCCATGCCAGAGAAGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATGTTGAATTAATATCTATTAATTTTTTCTTTAGGTTAATAGTTTGTTTTTTAAGCTTGTTATTCATTGATTAAGTAATAAATCTGAAAATTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATTACCGTTTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 172222-173287 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFCNM010000023.1 Escherichia coli strain 8563 23, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 172222 29 100.0 33 ............................. ACTCCTGCTGTAGCGAAAAGGGCAGAGCATAGC 172284 29 100.0 32 ............................. TTGTGCGAACCTCAGTTATTGTGCCCTGACGA 172345 29 100.0 32 ............................. AATTTATTCGGTTTATTCCGTCGGCGCGCGAC 172406 29 100.0 32 ............................. GGGATTTGCACTCCAGTTGATTGACCCGCAGC 172467 29 100.0 32 ............................. CCGCCGTCGAGTGTAATACCCTGATCCATCGC 172528 29 100.0 32 ............................. CAGGATTGAAATACAGCCTCGGCCTGGGACAG 172589 29 100.0 32 ............................. AGGCGAGGGAGATCAGAGATCAGGCTATTACA 172650 29 100.0 32 ............................. AGATCGGCGGCCAGTGGATAACCGTTATCCCC 172711 29 100.0 32 ............................. GTGTGGTAATTGGTGGTCTGGCTGGTGGTTTA 172772 29 100.0 32 ............................. AGAATCTGGACACTGCATATACCGCAATCCGT 172833 29 100.0 32 ............................. CCAGCCGTTCAGTATTGCCGGTGTCAGCAAAA 172894 29 100.0 32 ............................. GAAAAGCTACTTTTGTGTTCAACTGATGCATT 172955 29 100.0 31 ............................. CCGCGCAAATCCAGCGAGCCGCCGACGCTCA 173015 29 100.0 32 ............................. TTGCAAACCGTGGCAAACGCAATTAACAAAAA 173076 29 100.0 32 ............................. ATTGTTATAATTATTTATTGAAATATCATTCC 173137 29 100.0 32 ............................. AATCTATTGTGAATTTGAAATGGTCCAGCACT 173198 29 100.0 32 ............................. GGTAAAAACACGGTCTGAACCGACATTCATGT 173259 29 93.1 0 ...........AT................ | ========== ====== ====== ====== ============================= ================================= ================== 18 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTTGCCGCTGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGTTAGGCGATAGCGGTCATCGAGGACGCGGCGGATGAGTATGATCGTAGTTGTAACGGAAAATGTTCCTCCACGTTTACGTGGACGGCTCGCTATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTCGGAGATACATCCAAACGTATTCGGGAGATGATCTGGCAGCAAATCTCTCAACTGGCAGGTTGCGGAAATGTAGTGATGGCTTGGGCGACCAATACCGAGTCAGGTTTTGAATTTCAGACCTGGGGTGAAAATAGACGTATTCCGGTGGATTTGGATGGGTTGCGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTATCCGTTCTTTAAAAATAAGGAAATGTTTTAATTTAGTTGGTAGATTGTTGATGCGGAATAAATTTGTTTAAAAACAGTTATGTATGCTTAGT # Right flank : GGGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //