Array 1 710061-711469 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP047340.1 Proteus terrae subsp. cibarius strain ZF1 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 710061 28 100.0 32 ............................ TTGCTGATTGATAACGCCTAAATGTTCGAGGT 710121 28 100.0 32 ............................ ATCATCTGATAACTGTTGCTTACCTAATGTAG 710181 28 100.0 32 ............................ AAGAAGGTTTAGCACCATCAGTTGATGAGAAA 710241 28 100.0 32 ............................ GTAACTTGGAGCAACGAACCAATAAACGCCCC 710301 28 100.0 32 ............................ ACTAACAGCCTAATGTCGGGCTTCTCATTAAA 710361 28 100.0 32 ............................ GTGTATATCAGCTCTATATTCATCACCAGCAT 710421 28 100.0 32 ............................ ATGAGGCCTGTGACTCTGGCACACCGTAAACC 710481 28 100.0 32 ............................ TACAAACAAAATTTAAGAACGTATGCGGAATG 710541 28 100.0 32 ............................ TAACTCTGAAATATGGGTGAGCTTTAACCCGA 710601 28 100.0 32 ............................ TCTACCTTCGTTTAGGTCAGTATTTGATATTA 710661 28 100.0 32 ............................ TAATACCGCACGCCTCCATTCATTCAGTGATG 710721 28 100.0 32 ............................ ATCAGCATCACGTAAAAAACGGGTTGCGACTT 710781 28 100.0 32 ............................ GTATTCAGGCTCAACGGTGCGCCACTCAACAA 710841 28 100.0 32 ............................ TTTTTAAGTGGGGCAGAGAATAAAGGCATTGA 710901 28 100.0 32 ............................ ATCAAAAAAGTTAGTGGTGATATCTACGAATA 710961 28 100.0 32 ............................ TGTTGTATAAAGTATCTCGCTACCGATATATC 711021 28 100.0 32 ............................ TTTATCCTGCATAATTACAGGAATGTTAGAGT 711081 28 100.0 32 ............................ TATGAGGGACACTTAGCGGAAGCTGATGAATA 711141 28 100.0 32 ............................ TGTACGAATGTTCCAGCCTGTGGTTTTCCTTA 711201 28 100.0 32 ............................ CGTTAGCTTGGTAGCTTCTTGATGCAGAGATG 711261 28 100.0 32 ............................ AAAGAACAGGCACATCGATTGCAGCGAATACG 711321 28 100.0 32 ............................ AGATGGATATTGCTTTTCCTCCTCACGAGTAA 711381 28 100.0 32 ............................ TATTGCAGTGAACACAGCCAGCATGAATATTG 711441 28 89.3 0 .......A.........T..T....... | G [711467] ========== ====== ====== ====== ============================ ================================ ================== 24 28 99.6 32 GTTCACTGCCACATAGGCAGCTTAGAAA # Left flank : GCAAGGGCGTGCAATGCAATGCTCCTCTCTTATTCACGTTATTATTGATTCAACGGAAAATACGATTAGTCGAGTGAGAGTGGGCGGAAAAGCGACAATGATAGGTTCGAAGATTATTACTCTTTAAATTACTTGCGGTATTTTATATCAAGTTATTCCTAATAGGCCCCAGTGTAAAAACTAGGGCCTTTGTATTTTAAGTATTTATATAAAAACGACGTATTTATTGCTTCTTAAAATTTTATTATTGTTCGCTATGTGATTTGATTTTTCATTAAATAGATTTTATGGCAGAAAATGCGTAGGTGGTTTTTGTGAAAGTACCCGGAACGTTGAACTTTGGTTTTGACTTAAGTATATTCAATAATTAACCCTTTTATTTTGTTCTTTAAAAACGATAACAAAAACAGATGGTTACATTTTGCTGTTTTAAGCAAGGTAAAAATAGCTAAATGTTGCTAACACCTTGCTGTATCTTGTTTTTCTATGACAATACTATT # Right flank : ATTTATTTAATATATTTAAATCTTTTTCAGTAGTTATTAAAGCGTGTTTCACTTGTATATTCCTTTCTTATTGTATTTAGAAATAACTATTTGGCATTTTTTATAATTAAATTTTCCTTAATAGTTCACATATATACAATTTGCTTATGTCATGCTTATTCCTTAATTGGTATTGTTTGGAAGTGACTAAAAGAGGCTAAAGTAATGGAAGATTTATCCCCCTCCGATTTGAAAACCATTCTTCATTCTAAAAGAGCCAATATGTATTACTTGGAATACTGCCGAGTGATGCAAAAAGATGGTCGTGTTTTATATCTTACAGAGTCGAAGAAAGAGAATCTCTACTTCAATATCCCTATTGCTAACACTACCGTCTTATTACTTGGTAATGGCACATCAATTACTCAAGCCGCAATGCGTATGCTTTCACAAGCTGGTGTATTGGTAGGTTTTTGTGGTGGAGGTGGCACACCTCTACACATGGCGACTGAGGTAGAGTG # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCACATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCACATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.20,-8.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [71.7-81.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.64 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 720183-721110 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP047340.1 Proteus terrae subsp. cibarius strain ZF1 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 720183 28 100.0 32 ............................ ATAGATAAATATTTATGTTTTCTCATTGAAAT 720243 28 100.0 32 ............................ ATATTATCTTCACGGCCTTGCTTTGTAGATTG 720303 28 100.0 32 ............................ ATTAGTGAATGTGCCCAGGCGAAAATTAATCG 720363 28 100.0 32 ............................ ACCCGATACTCGATGTAAATCATTTAAACAAT 720423 28 100.0 32 ............................ TAACCTGTCGATGGTTTCACAAAGCAACTTAT 720483 28 100.0 32 ............................ CGAAGAATATCCTTGATGACACTTACCAGAGA 720543 28 100.0 32 ............................ AGTTAACGGTAATAATAAAGGCTCAATGCTTT 720603 28 100.0 32 ............................ ATCACGCCACACTTCATCAATCACCGGTGTCA 720663 28 100.0 32 ............................ GCCTGAGGTGGCAAAATAATCAGGCTCAATAT 720723 28 100.0 32 ............................ TAGCGGGAAAAACCTTAACCGATGTGCAAAAA 720783 28 100.0 32 ............................ ATATAAACCTATTTTTGAGCGTTTATTTTTAT 720843 28 100.0 32 ............................ ACTAGCAGAATTGATACCGCTAGAATCGCCAT 720903 28 100.0 32 ............................ TACAAGATTTTGCGCTTCTAAAACTTCGTTGA 720963 28 100.0 32 ............................ TGCAGTAATTTGCACACTTGGCGAAACGTCAT 721023 28 96.4 32 ..T......................... AGTCAAACTCATAACTAATTCTTTTTGTTCGT 721083 28 96.4 0 ..T......................... | ========== ====== ====== ====== ============================ ================================ ================== 16 28 99.6 32 GTCCACTGCCGCATAGGCAGCTTAGAAA # Left flank : TGTGGGAGAATATGCCTGTTTTACGCGCCACAATCCTAAATCTCAACAGCGTCGCTTAAAGCAATTGGAACGTCGAACTTCTTACTTAGCACAAAAACATGGTGTTGATGAAGATACTATGCGAGCGGAACTTTTGGCATCAATTGAGCAAAAATCGGGTGAAAGTAAATTGCCATATATTAATGTGCAAAGTTTATCAACATCTACTGAACCTCAGTTACGTCATAAGTTTATGCTTTTTATTCAATGCAATAAGTCGAACTCGCAATTGAGGAATAGCAACACATTTTCTTGTTATGGGTTGAGCCAAAAAGAAAAAGGGAAGCAGACTTTTGTACCTTGGTTTTAACCTAAATATTCAATAGCAAAACCCTTTATTTTTCTCTCTTTAAAAACTTCAGTAAAAACAACAAGCTATATGCGGGCGTTTTTAATAAGGTAAGAATGGTTAAATCTTACTAACGTCTTGCTGGAGCTTGTTTTTTCGTGATAAAGCTATT # Right flank : ATATAGAGGAGAGATTGTTTTTCAGGGTTAAGGGCTCACTGCATCCCGGATGTTTTATTTCCGTTCGTGTACAGATGCTAGAGCAATCCATTTATAACGTGAGAATGCGTGAGATGGAAAAGTTTCTTTTGGTACTAAAAAACTATAGAGAAAATAAAATTATTAAATATGGGGATAAGGCAAGGATATTTATTTGGTATATGGAAAATATACAGAAAATATACAGAAAAGAAACGCCACTATAGAAATAGCACTGCCTTTTTTAATTCAAGATTTTCGTAGTTATAGTTTAGAGAGTGATCTTTCAGATGATGAGGTAAAAAGTACAATAAGGAAAGTTAAAGAGTATCTTATTCAAGCTGAAAATAGGTATAAAAAAACTAAAGGGTATGATAAGAGTTAATCAGAACACCAATAAGACACCAGAAATTGATAACTGATTGAATATATAATTCGATAACTGGCACTGCTTTATTTTTTCAATAAATTAGCCATTTCTG # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCACTGCCGCATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [66.7-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.24,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //