Array 1 410032-409144 **** Predicted by CRISPRDetect 2.4 *** >NZ_SQLI01000061.1 Escherichia coli strain LTCUHB9 NODE_337_length_437747_cov_42.803337, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ======================================== ================== 410031 28 100.0 32 ............................ GCGCACGGCGTGGCGACAGAGAGCACGCCCGC 409971 28 100.0 37 ............................ AGCCAAAATAATGCGTCGCTTTCTGACNNNNNNNNNN 409906 28 100.0 32 ............................ AGTTCGGCATGAGCAGCTCCTCTGTAGTCAGA 409846 28 100.0 40 ............................ AGCAAAAACCGGATATAGACAATCTCACTANNNNNNNNNN 409778 28 100.0 32 ............................ AATTCGTGCTGGCGCGGGTCGTGGCATCACGT 409718 28 100.0 32 ............................ TGACGTCGCGTGAATATGACGCCGTTGTTTTT 409658 28 100.0 32 ............................ ACATTTCCGCCGTTATGAATCGGTATTCCATA 409598 28 100.0 32 ............................ ATGAAAAGCGCCGCCTTTATGCGCCCGATTTT 409538 28 100.0 32 ............................ GCTTGGGGAGTATTGGGAATCGCTCGGCGGGA 409478 28 100.0 39 ............................ ATCCTGGCAGAACAACCAGTCAGCAGATCCNNNNNNNNN 409411 28 96.4 32 N........................... CGGGGAATGACACGCCGTTAATAGTGGAACTT 409351 28 100.0 32 ............................ GCAAACGGAATTAGCAGCAGCATGATCAAAGA 409291 28 100.0 32 ............................ CTGGAGGCGCTCACACTCACGCGGAGTGAGAC 409231 28 100.0 32 ............................ GAATATTTTGGAAAAATAGCTATCAATCCGGG 409171 27 92.9 0 .......................C-... | T [409152] ========== ====== ====== ====== ============================ ======================================== ================== 15 28 99.3 34 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : GTGTAGGCCATGTCTGGCGCAAAAAAAAGCCCGTACTTTCGTACGAGCTCCTCTTTAAAGATGGCGGTGAGGCGGGGATTCGAACCCCGGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTGTTTTGCTGCCAGACCTCATAGGTGGCAACGGGGCGCTACTATAGGGAGTTGGAGTGAAACGGTCAAGAAGAATTTATATAGATTGATTTGTTTGGTTACGCAATGAACACGCTGTTCGCGGGACGGAGATTATGACCGTATGTGTTCTGGTCAATTGTTTATCAAAAGCTATGCAGAAAATATGAGATTGAAGAAATACCAAACCGACCCTTTTTCTAGGTTGTAATGTAACTCATTGATTTTCTTATTGCTATTTTGAAGTCTGGAAAAAGGGTTTGAATCTGCGATTTTGTAAGTTTTAACAGTAAATCAATCGGATAGTCTGCTATTATTCCNNNNNNNNNN # Right flank : CTCAACACTCCATCCTCTAATATTTATTCCCCATAACTCATAGACGCAAAAAAGGCCGGTTAAACCGACCTTTTACTCATTCTTTCTCTTCGCCCATCAGGCGGTAAAACAATCAGCGACTACGGAAGACAATGCGGCCTTTGCTCAGGTCGTACGGGGTCAGTTCAACAGTCACTTTGTCGCCCGTCAGGATGCGGATGTAGTTTTTGCGCATTTTACCGGAGATGTGTGCAGTAACCACGTGACCGTTTTCTAACTCTACGCGGAACATGGTATTAGGCAACGTTTCAAGAACGGTACCTTGCATTTCAATATTGTCTTCTTTGGCCATCTAATCCTCTGGGGTATCACTACCGTAATTTGAACCGGCAAGATAATGCCGAAGTTCTGTAAATAAGTAAAGATTTGCGCGCTAAATCGCAACAAACAGGTTCGGCACATTACTCCGAAAACACACGGCTAAGCCGCACCAAAAGCGCAACGTATAAGGGAGCGGTGAG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 419768-419097 **** Predicted by CRISPRDetect 2.4 *** >NZ_SQLI01000061.1 Escherichia coli strain LTCUHB9 NODE_337_length_437747_cov_42.803337, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ========================================== ================== 419767 28 100.0 41 ............................ AGAAGGGCGGGCGTCGTGTTGTTAAGCGCGNNNNNNNNNNA 419698 28 100.0 42 ............................ CGTGCGTATGCTGCCGCGCGATTCAGTACATCNNNNNNNNNN 419628 28 100.0 32 ............................ TGGATTACCGAGGCCCGAAAATATATTGGTGA 419568 28 100.0 32 ............................ AAAAAGTTGCGTCGCGTGACCGGCACTATAGA 419508 28 100.0 32 ............................ AGCGGTCGCCAAGGCAATGCTCGTACGCCGTC 419448 28 100.0 39 ............................ ACATCGACCGGGCCTGACCTCCTGCCTCCANNNNNNNNN 419381 28 96.4 32 N........................... CGGCGCAGTGGTTTCCATTGGTGGGAAAAATG 419321 28 100.0 39 ............................ GCATCACGTGTGGTGACTGAATACGCGGTCNNNNNNNNN 419254 28 96.4 40 N........................... CTGCTCGACCCTGTCATGCGGCGCATCCGGCNNNNNNNNN 419186 28 96.4 32 N........................... CTGAACGTTGAAGAGTGCGACCGTCTCTCCTT 419126 28 85.7 0 ....................T...C.CT | C,A [419100,419103] ========== ====== ====== ====== ============================ ========================================== ================== 11 28 97.7 36 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : AAATTCATCGTCGAGTTGCAGGTTCAGTTGGATCAGAAAGGTGTTTCTCTGGAAGTGAGCCAGGAAGCGCGTAACTGGCTGGCCGAGAAAGGTTACGACCGGGCAATGGGCGCACGTCCGATGGCGCGTGTCATCCAGGACAACCTGAAAAAACCGCTCGCCAACGAACTGCTGTTTGGTTCGCTGGTGGACGGCGGTCAGGTCACCGTCGCGCTGGATAAAGAGAAAAATGAGCTGACTTACGGATTCCAGAGTGCACAAAAGCACAAGGCGGAAGCAGCGCATTAATCTGATTGTCTGGTAGGTTGGTTAAGTCCGTGATCTCGTCAGGGGTTACGGACTTTTTATTTATGGGGGGAGGAGGTTCAGACCCTTTTTTTAATGATGATGCTAAGTTATTGATAATTAGTGCTGCGGGTAGGTAAGGATAAAAAAGGGTGGCAGCAGGAGATTGAGATGGTTTTGCTTTATTAACAACGGGCTAAACGTGTAGTATTTGA # Right flank : ACGATAGTGTTAGACGTTTGGTCGTGCAATGACACTCTCAACTTCAAACCATTAGCGTTAGCACGCAATAACAATCGTAATAATTGCGATGGAAATCAATTTTCAGCACATAAATCAATGCTGTACTAAGCCCAATACCTTCAAATATAAAATAATCACAGGATGTGTTTATGTCTTCGAATTACCTTACGCCTTCCGATCTCAAAACCATTCTCCACTCCAAACGCGCCAATATTTATTATCTGGAAAAATGCCGGGTACAGGTGAATGGTGGGCGGGTGGAGTATGTTACCAGCGAAGGTAAAGAGTCGTACTACTGGAATATCCCCATTGCGAATACCACGGCGTTGATGCTGGGAATGGGAACTTCCGTTACCCAGGCGGCGATGCGTGAATTTGCTCATGCCGGGGTGATGGTAGGCTTTTGTGGTACGGATGGCACGCCGCTGTATTCAGCAAATGAAGTGGATGTTGATGTCTCCTGGCTCAGCCCACAAAGT # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.85%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-4.70,-5.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //