Array 1 336905-340160 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAJHCI020000001.1 Acidithrix sp. C25 isolate 1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================== ====================================== ================== 336905 24 100.0 37 ........................ CTTATAAATTCATGGTTTCTATCGCCTATTGACCTCT 336966 24 100.0 37 ........................ CTATCGAACTACCACTTTTTACAGTTACAGGTGCTCT 337027 24 100.0 38 ........................ CTTGAATTCTATAGCGGCTAAGCTTGGTGTGAGGCTCT 337089 24 100.0 37 ........................ TCGTTCCCTGTGGAAGTAAGTTAGGAACTTTAGCTCT 337150 24 100.0 37 ........................ AGATCCAAATACCACTGAGTTACAAGATCTGTGCTCT 337211 24 100.0 37 ........................ CTGGTATCGAGGCGTTAGTAATATTTGCATCCACTCT 337272 24 100.0 37 ........................ CTGAGGATTACACCAGCGGTAAATGTCCATACGCTCT 337333 24 100.0 37 ........................ CTTGGTCTGGTTCGACGCGTCGCAAACCGTTATCTCT 337394 24 100.0 37 ........................ CTCTCGGAATTGGAGCCGAAACCTCTTACGGCTCTCT 337455 24 100.0 37 ........................ CTCAAAGAATCGAAGACGCGCTTATGGGCGTAGCTCT 337516 24 100.0 37 ........................ CTTGGAAAACCCGCGGGATATCTTGCGGTCATCCTCT 337577 24 100.0 37 ........................ CAAAGCATGGTTGAGACTCAGACTCTAGTCTCCCTCT 337638 24 100.0 37 ........................ CTCCCTAGCTTTGCGGGCGTAGGTTTTGTACAGCTCT 337699 24 100.0 37 ........................ CCAGGCGAAGGCTAATGCCTCGTGGTCTACCAACTCT 337760 24 100.0 37 ........................ CGAAAGCTCCAACAACGTTTCGGTAATTGATGCCTCT 337821 24 100.0 37 ........................ CCGTACATCGTTCTGACCCACTGCTCAGGCTCACTCT 337882 24 100.0 37 ........................ CATCGGCACCAAGCTCGATTCCGCAAAAGGGAACTCT 337943 24 100.0 37 ........................ TAACAATGTGCGATGACTACGGGAAAACGTTTTCTCT 338004 24 100.0 37 ........................ TTCGACGGTATCGCCAACCCAACCGTCATGACGCTCT 338065 24 100.0 37 ........................ TCAACGACAAAGCTACCAATGCCACAACCCCAGCTCT 338126 24 100.0 37 ........................ CTGAGTTCTCTCCAAAAGAATTAGCGCTTCATACTCT 338187 24 100.0 34 ........................ CTCCACCAGTTGAGACTCTATCCATCTGGGCTCT 338245 24 100.0 37 ........................ CTTTTTGGGCGAGTACCAAGAGACGATTCAACGCTCT 338306 24 100.0 37 ........................ CATAGCCATTGCCATAGGCGACGCCATTAGAGTCTCT 338367 24 100.0 37 ........................ TTTGAGCCGCGCTTCCCGAAGCCTTGCCATAGGCTCT 338428 24 100.0 37 ........................ CTAAAGCTTCCTTGAAGAACGATGAGCTGAGAGCTCT 338489 24 100.0 37 ........................ CTTTTGCTCGAAGCCGTCTTAGGCAGCATGTCACTCT 338550 24 100.0 37 ........................ CGCGCCTTCCTCGACGCCTGGCATGTATGCAGGCTCT 338611 24 100.0 37 ........................ TATTAGTTGCCATGGTGATATATGTACCAACTACTCT 338672 24 100.0 37 ........................ CTAAAGCCAGAGGAAGACGCCAAAATGTTACAGCTCT 338733 24 100.0 37 ........................ CGAATCAAGGTTTTACATTGGCGGCAACGGATTCTCT 338794 24 100.0 37 ........................ CTAACAAACATTTTCAGAGGACAACCGGACAATCTCT 338855 24 100.0 37 ........................ CTCGTGGTTCTTATCTCCAATAGACACGCTAGACTCT 338916 24 100.0 37 ........................ CATTAGTCAAGCTTCGCGACTGGCAGCAGGACACTCT 338977 24 100.0 37 ........................ CAAGATCAGAAGCCTGCATTGTCCCAGACCAACCTCT 339038 24 100.0 37 ........................ CTTTGAAGAGATATTTAACTGCTCATGCAGGGACTCT 339099 24 100.0 37 ........................ TTAAAATTGGCTTCTTTTCCCTCTTAGCAGCTGCTCT 339160 24 100.0 37 ........................ CGCTATCTGATGCGCTTCGTCATAAATCACAAGCTCT 339221 24 100.0 37 ........................ CTTATACTGCGCCTGTTCAACAGCTTCCGTACGCTCT 339282 24 100.0 37 ........................ CTCCTAATGAGGAGTTACAAAGGAGATAGGGAGCTCT 339343 24 100.0 37 ........................ CTTCCATTATACCACTTTCTTGTAGTCGATACTCTCT 339404 24 100.0 37 ........................ CTCATCGAGCTTGCGCCTAAAGGCCTACCCAAACTCT 339465 24 100.0 38 ........................ TAGGTCAAACACAGCTATTACCGCCCAACCAAAGCTCT 339527 24 100.0 37 ........................ TTTCTTCCTCAACAATTAGGGGGGAGGAGGCAACTCT 339588 24 100.0 37 ........................ CTGTATAGGTAACACCATTGGCAAAGCCAGTATCTCT 339649 24 100.0 37 ........................ CTTGCATCCCTGCTTGCTTCAATATCACAGATCCTCT 339710 24 100.0 37 ........................ CATACCCATTGCCATAAGCAACGCCATAAGGGTCTCT 339771 24 100.0 37 ........................ CATCCGAGTGGCGCTCGGCCTCTAAACCACGATCTCT 339832 24 100.0 37 ........................ CAATGGTGTCTACCCCGTCGGATATAGCGAAGACTCT 339893 24 100.0 37 ........................ CGCTAACAAAGGCGAACCGTTAGAACAGGTAGCCTCT 339954 24 100.0 37 ........................ CCGCCGAGGCTTGGATCAGCGTTTATCGCCGAGCTCT 340015 24 100.0 37 ........................ CACTATTGAGGCTAGCGCTGTTCCAGGTGCACCCTCT 340076 24 100.0 37 ........................ CATGGCTTATCGCAATCGCCGCCGATAGGGAAGCTCT 340137 24 100.0 0 ........................ | ========== ====== ====== ====== ======================== ====================================== ================== 54 24 100.0 37 TCCCCGTACACGCGGGGGTCATCC # Left flank : AACCCATGAAAGTGCTTGGGGGTCTATTACGGAGGTCTCTCCATCGCCACAAGGTTTTGGATGAGATGTTTAGCATGACACAAGACCTATTGGCCGAAGGATGTATCCCACACGATGGGGAGGACCGTTTGCTTGGAGACGGCGGATTTGTCCCTGGTTTGAAGAATTGGCATCTGGAGTAGGTATGTTCATTGTCTTAGTTGTTGAGTCTGTGCCGGATCATCTCCGAGGCTATTTAGAGAGATTCCTATGTGAGGTGCGCACCGGAACATATGTCGGGACGCTATCGTCGCGTGTCATTGACCAGATGTGGGAAGCGACAATTACCCACGCAGGTCCGGGAGATGTCGTAATGGTAAATCCCGAGAATACAGAGTGCGGATTTCGCGTTCGAGCTAGGGAGCATCCACGATGGCAGCTTGTAGATCACGATGGGTGGTTACTGCCGCAAGTATCAAGCTATCATTCCGACTAATATAAGAGCAGGTCGAGAAGGCTCT # Right flank : CCGCCACCTATAGCGTTGCCAGCAACATTAAATTGACCCAGGATCAGCAACATTAAATTGACCCACCCCCCAGTACGTCGTGACGAGGTTCCCAGCTTCAATAGACTTTTAGATGAGTACCACTGGCTCGGCCACAACCTCGTCGGCGAGGCTATCCGCTACATCGCTCTGAAGACGAACGCGTTGTCGCTCTGGTCGGCTTCGGGTCTGCTGCGCTGAGCCTTAGTGCGAGGGATCGCTATATCGGCTGGAAACCCGAGATCCAGTTCCGCCGACTGCGCTATGTGACGAACAACCAACGATTCTGCGTTCTCCCTGGCCAAAGCAGGCCGAACCTCGCCTCTGCTGTGTTGTCGCGGGTACTGCGCAGGCTTTCCTCGGACTTCGTTCACAGCTACGGGCATCCGGTGCTGTTAGTAGAGACCTTCACTGATCCAATGCGCCACGCTGGCACCTGCTACAAGGCTGCGAACTTCACCCAAAGTGGGTGAGAGCCTCGG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TCCCCGTACACGCGGGGGTCATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched TCCCCGCACACGCGGGGGTGATCC with 92% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-10.90,-8.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 336905-340160 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAJHCI020000006.1 Acidithrix sp. C25 isolate 1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================== ====================================== ================== 336905 24 100.0 37 ........................ CTTATAAATTCATGGTTTCTATCGCCTATTGACCTCT 336966 24 100.0 37 ........................ CTATCGAACTACCACTTTTTACAGTTACAGGTGCTCT 337027 24 100.0 38 ........................ CTTGAATTCTATAGCGGCTAAGCTTGGTGTGAGGCTCT 337089 24 100.0 37 ........................ TCGTTCCCTGTGGAAGTAAGTTAGGAACTTTAGCTCT 337150 24 100.0 37 ........................ AGATCCAAATACCACTGAGTTACAAGATCTGTGCTCT 337211 24 100.0 37 ........................ CTGGTATCGAGGCGTTAGTAATATTTGCATCCACTCT 337272 24 100.0 37 ........................ CTGAGGATTACACCAGCGGTAAATGTCCATACGCTCT 337333 24 100.0 37 ........................ CTTGGTCTGGTTCGACGCGTCGCAAACCGTTATCTCT 337394 24 100.0 37 ........................ CTCTCGGAATTGGAGCCGAAACCTCTTACGGCTCTCT 337455 24 100.0 37 ........................ CTCAAAGAATCGAAGACGCGCTTATGGGCGTAGCTCT 337516 24 100.0 37 ........................ CTTGGAAAACCCGCGGGATATCTTGCGGTCATCCTCT 337577 24 100.0 37 ........................ CAAAGCATGGTTGAGACTCAGACTCTAGTCTCCCTCT 337638 24 100.0 37 ........................ CTCCCTAGCTTTGCGGGCGTAGGTTTTGTACAGCTCT 337699 24 100.0 37 ........................ CCAGGCGAAGGCTAATGCCTCGTGGTCTACCAACTCT 337760 24 100.0 37 ........................ CGAAAGCTCCAACAACGTTTCGGTAATTGATGCCTCT 337821 24 100.0 37 ........................ CCGTACATCGTTCTGACCCACTGCTCAGGCTCACTCT 337882 24 100.0 37 ........................ CATCGGCACCAAGCTCGATTCCGCAAAAGGGAACTCT 337943 24 100.0 37 ........................ TAACAATGTGCGATGACTACGGGAAAACGTTTTCTCT 338004 24 100.0 37 ........................ TTCGACGGTATCGCCAACCCAACCGTCATGACGCTCT 338065 24 100.0 37 ........................ TCAACGACAAAGCTACCAATGCCACAACCCCAGCTCT 338126 24 100.0 37 ........................ CTGAGTTCTCTCCAAAAGAATTAGCGCTTCATACTCT 338187 24 100.0 34 ........................ CTCCACCAGTTGAGACTCTATCCATCTGGGCTCT 338245 24 100.0 37 ........................ CTTTTTGGGCGAGTACCAAGAGACGATTCAACGCTCT 338306 24 100.0 37 ........................ CATAGCCATTGCCATAGGCGACGCCATTAGAGTCTCT 338367 24 100.0 37 ........................ TTTGAGCCGCGCTTCCCGAAGCCTTGCCATAGGCTCT 338428 24 100.0 37 ........................ CTAAAGCTTCCTTGAAGAACGATGAGCTGAGAGCTCT 338489 24 100.0 37 ........................ CTTTTGCTCGAAGCCGTCTTAGGCAGCATGTCACTCT 338550 24 100.0 37 ........................ CGCGCCTTCCTCGACGCCTGGCATGTATGCAGGCTCT 338611 24 100.0 37 ........................ TATTAGTTGCCATGGTGATATATGTACCAACTACTCT 338672 24 100.0 37 ........................ CTAAAGCCAGAGGAAGACGCCAAAATGTTACAGCTCT 338733 24 100.0 37 ........................ CGAATCAAGGTTTTACATTGGCGGCAACGGATTCTCT 338794 24 100.0 37 ........................ CTAACAAACATTTTCAGAGGACAACCGGACAATCTCT 338855 24 100.0 37 ........................ CTCGTGGTTCTTATCTCCAATAGACACGCTAGACTCT 338916 24 100.0 37 ........................ CATTAGTCAAGCTTCGCGACTGGCAGCAGGACACTCT 338977 24 100.0 37 ........................ CAAGATCAGAAGCCTGCATTGTCCCAGACCAACCTCT 339038 24 100.0 37 ........................ CTTTGAAGAGATATTTAACTGCTCATGCAGGGACTCT 339099 24 100.0 37 ........................ TTAAAATTGGCTTCTTTTCCCTCTTAGCAGCTGCTCT 339160 24 100.0 37 ........................ CGCTATCTGATGCGCTTCGTCATAAATCACAAGCTCT 339221 24 100.0 37 ........................ CTTATACTGCGCCTGTTCAACAGCTTCCGTACGCTCT 339282 24 100.0 37 ........................ CTCCTAATGAGGAGTTACAAAGGAGATAGGGAGCTCT 339343 24 100.0 37 ........................ CTTCCATTATACCACTTTCTTGTAGTCGATACTCTCT 339404 24 100.0 37 ........................ CTCATCGAGCTTGCGCCTAAAGGCCTACCCAAACTCT 339465 24 100.0 38 ........................ TAGGTCAAACACAGCTATTACCGCCCAACCAAAGCTCT 339527 24 100.0 37 ........................ TTTCTTCCTCAACAATTAGGGGGGAGGAGGCAACTCT 339588 24 100.0 37 ........................ CTGTATAGGTAACACCATTGGCAAAGCCAGTATCTCT 339649 24 100.0 37 ........................ CTTGCATCCCTGCTTGCTTCAATATCACAGATCCTCT 339710 24 100.0 37 ........................ CATACCCATTGCCATAAGCAACGCCATAAGGGTCTCT 339771 24 100.0 37 ........................ CATCCGAGTGGCGCTCGGCCTCTAAACCACGATCTCT 339832 24 100.0 37 ........................ CAATGGTGTCTACCCCGTCGGATATAGCGAAGACTCT 339893 24 100.0 37 ........................ CGCTAACAAAGGCGAACCGTTAGAACAGGTAGCCTCT 339954 24 100.0 37 ........................ CCGCCGAGGCTTGGATCAGCGTTTATCGCCGAGCTCT 340015 24 100.0 37 ........................ CACTATTGAGGCTAGCGCTGTTCCAGGTGCACCCTCT 340076 24 100.0 37 ........................ CATGGCTTATCGCAATCGCCGCCGATAGGGAAGCTCT 340137 24 100.0 0 ........................ | ========== ====== ====== ====== ======================== ====================================== ================== 54 24 100.0 37 TCCCCGTACACGCGGGGGTCATCC # Left flank : AACCCATGAAAGTGCTTGGGGGTCTATTACGGAGGTCTCTCCATCGCCACAAGGTTTTGGATGAGATGTTTAGCATGACACAAGACCTATTGGCCGAAGGATGTATCCCACACGATGGGGAGGACCGTTTGCTTGGAGACGGCGGATTTGTCCCTGGTTTGAAGAATTGGCATCTGGAGTAGGTATGTTCATTGTCTTAGTTGTTGAGTCTGTGCCGGATCATCTCCGAGGCTATTTAGAGAGATTCCTATGTGAGGTGCGCACCGGAACATATGTCGGGACGCTATCGTCGCGTGTCATTGACCAGATGTGGGAAGCGACAATTACCCACGCAGGTCCGGGAGATGTCGTAATGGTAAATCCCGAGAATACAGAGTGCGGATTTCGCGTTCGAGCTAGGGAGCATCCACGATGGCAGCTTGTAGATCACGATGGGTGGTTACTGCCGCAAGTATCAAGCTATCATTCCGACTAATATAAGAGCAGGTCGAGAAGGCTCT # Right flank : CCGCCACCTATAGCGTTGCCAGCAACATTAAATTGACCCAGGATCAGCAACATTAAATTGACCCACCCCCCAGTACGTCGTGACGAGGTTCCCAGCTTCAATAGACTTTTAGATGAGTACCACTGGCTCGGCCACAACCTCGTCGGCGAGGCTATCCGCTACATCGCTCTGAAGACGAACGCGTTGTCGCTCTGGTCGGCTTCGGGTCTGCTGCGCTGAGCCTTAGTGCGAGGGATCGCTATATCGGCTGGAAACCCGAGATCCAGTTCCGCCGACTGCGCTATGTGACGAACAACCAACGATTCTGCGTTCTCCCTGGCCAAAGCAGGCCGAACCTCGCCTCTGCTGTGTTGTCGCGGGTACTGCGCAGGCTTTCCTCGGACTTCGTTCACAGCTACGGGCATCCGGTGCTGTTAGTAGAGACCTTCACTGATCCAATGCGCCACGCTGGCACCTGCTACAAGGCTGCGAACTTCACCCAAAGTGGGTGAGAGCCTCGG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TCCCCGTACACGCGGGGGTCATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched TCCCCGCACACGCGGGGGTGATCC with 92% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-10.90,-8.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //