Array 1 162576-160979 **** Predicted by CRISPRDetect 2.4 *** >NZ_PGWJ01000002.1 Salmonella enterica subsp. enterica serovar Heidelberg strain C_NS-006 NODE_2_length_613486_cov_28.8101, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 162575 29 100.0 32 ............................. GGGAAAAATCAATAAAATCAATGATAAGCAGT 162514 29 100.0 32 ............................. GCTGGGTAGTGGAGTAATCATTATGTGTGGTG 162453 29 100.0 32 ............................. CAGTGAGATGCCGCCAATTTGTCAAATAAAAT 162392 29 100.0 32 ............................. CCTTTAATCGCCTCTTATCGCCTGGATTGGTT 162331 29 100.0 32 ............................. TTAAATCCATATACGGGCCTTGCGGGTTTGCC 162270 29 100.0 32 ............................. GCGGCTCTGTGTTGGGCGATGGCTCCGGTGGT 162209 29 100.0 32 ............................. GCGCGCCAATAATTTTATTGACGATTTCATCA 162148 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 162087 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 162026 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 161965 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 161904 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 161843 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 161782 29 96.6 32 ......T...................... GTTTGCCGTATCTTCGATCATACCGGAACGGT 161721 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 161660 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 161599 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 161538 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 161435 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 161374 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 161313 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 161252 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 161191 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 161130 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 161069 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 161008 29 96.6 0 A............................ | A [160981] ========== ====== ====== ====== ============================= ========================================================================== ================== 26 29 99.5 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:-0.10, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 179960-178834 **** Predicted by CRISPRDetect 2.4 *** >NZ_PGWJ01000002.1 Salmonella enterica subsp. enterica serovar Heidelberg strain C_NS-006 NODE_2_length_613486_cov_28.8101, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 179959 29 100.0 32 ............................. TTCCAGAACCGTTTGACTTACTGTGGCCATTA 179898 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 179837 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 179776 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 179715 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 179654 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 179593 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 179532 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 179471 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 179410 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 179349 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 179288 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 179227 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 179166 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 179105 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 179044 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 178983 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 178922 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 178861 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================ ================== 19 29 98.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTAGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //