Array 1 71398-70762 **** Predicted by CRISPRDetect 2.4 *** >NZ_RRUC01000045.1 Bibersteinia trehalosi strain OADDL-BT1 NODE_102_length_138470_cov_352.439697, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 71397 32 100.0 33 ................................ GGCGATCTGATTGATGTTAAGTTTTAGATCAAA 71332 32 100.0 35 ................................ AAAAAGAGTTAATTCCCACCGGTGGAAGTAAAGCA 71265 32 100.0 34 ................................ TTTTGCCTACTCTAAACGTATAATAAAGTCAATT 71199 32 100.0 35 ................................ CCGGCAAATGCGATTTTTATCACTAAGCTGGAAAA 71132 32 100.0 34 ................................ TGTTATGACGGTAGCAGGAGCTATTGGTAAAGCA 71066 32 100.0 34 ................................ GCACATATTTTGCCAAAGGTGATTCGATTCGCTG 71000 32 100.0 35 ................................ ATTTCTAAACATAGCTACCTACTACTATTTCTCAT 70933 32 100.0 34 ................................ ACTTACACCGTCTTGGATCATACGGTGGCGAAGT 70867 32 100.0 35 ................................ AGGCTTTTGACCAAATCACCGGTCACTTGCAAAAT 70800 32 100.0 0 ................................ | GGATGTC [70779] ========== ====== ====== ====== ================================ =================================== ================== 10 32 100.0 34 GCAGCTACCTGTAGGTGGCTGAGAGTTGAAAC # Left flank : GATGACTGTCGATCTTGGTATTAATAGTAATGATAAAGTGGGGGATGAAGCTGAGCTTTGGGGGGAAAATTTGTTAATTGAAGAAGTCGCTAATGCCATGGGGGTAATCAATTATGAATTAATTACCAAATTAACCCCAAGAGTGCTTTTTGAATATCTTGATTAACGCTAGCACATTTAAATAATCTTGTAACATCATTCAAAAAAGGATATTACACAGCGTTAAATAGTTTGTAAAAAATTCCCTGAAATAGACCGCTTACATAAGATAAAGCAACATTCCCTCCTAATGTTTCATGTTTATTTCTCTTCTCGCTAACCCTCGGTTCTCAGCAAAATACCAAGAGGTTAGCGATTTATTATTTCCCTTACGAATCAAGTTGTTACAAACTTCCATCATATAACAGATATTATGCTACACTGTAAATCAATCCCCATATTTTAAGCTAGCGAATCGTTAGGGTTTAATCCTTGTGACGTAATGCTTTGGTATATAGGGA # Right flank : TTAATGGTTTTGCATACCGTTACCCCCTCAAGTGGCAGCTACCTACGGGTAGCTGCCACTCTATTTCTAGCAAAGATGAATGTTACTCAAACAAATCTCCAAGCAAGAATTGCAATACCGAATCCATTCTTAAGTGAGGAAGAGCTTGGCCAAAGTCGATTTTTCTAGGTTCAAACTGATCGAAATCGAAGGTATGATTTTGCCAAAAATCCGAATTCGGTAGCCGATTGGGGACGCTCCCTGCAAACTGGGTTACCTGTCGCTTATCCTTTGTCCGTACCCCTCGAATAGCTTTAAAGCTCTGCCCATTTTCACTCACCGTCACGGCTTCGGTCGCTCGAATTGCAGAAATGGCTTGATAAGCTGTTTCAATCCCGTCAAATTCAGCATGTCTGCCACCTTCCTGCACTAACTGTCGCATAAGACTTTCTAAATTTGGAAGCTGATCACTTGTGATGTGATCGGCTTTAGTTGCGGCAAATAGAAGTTTATCAATATTA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCAGCTACCTGTAGGTGGCTGAGAGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [7,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GCAGCTACCTGTAGGTGGCTGAGAGTTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-1.80,-2.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [50.0-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.14 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 87202-88161 **** Predicted by CRISPRDetect 2.4 *** >NZ_RRUC01000035.1 Bibersteinia trehalosi strain OADDL-BT1 NODE_69_length_108883_cov_346.014893, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 87202 36 100.0 30 .................................... TGATCATTTTTGCCATATCTTCTAGCATTT 87268 36 100.0 30 .................................... ATACTGCTGTTTCGATATTGTCGGTGTCAC 87334 36 100.0 30 .................................... TCTTATAATCATTGTGAATTTACCTTGTGA 87400 36 100.0 30 .................................... TCATACCTATTGACATAGCTAAGGATTTTA 87466 36 100.0 30 .................................... GCAAGGCGAAAAAAGCCCCGATTAATGAAA 87532 36 100.0 30 .................................... TGGTCACTATCTCAATAGAGAGAAATAAGC 87598 36 100.0 30 .................................... TGTAAGGCCGTAGTGGATCACCTATTTCAA 87664 36 100.0 30 .................................... TTGTGCCATCGAGTTAATTTGATTTTCGGC 87730 36 100.0 30 .................................... AAATTATCGCTATTTGTGCAAAATATAACG 87796 36 100.0 30 .................................... GCTTATACAAGAAGCTATGAATTGATTCGA 87862 36 100.0 30 .................................... CAAATTCCGCAGGTTCATCGCCTAGTATTT 87928 36 100.0 30 .................................... GCATCGAGCAGAGTTACCGGGCAAATAAAT 87994 36 100.0 30 .................................... ATTGAAAGCGAAGTCGGCACTTCACTACCT 88060 36 100.0 30 .................................... AATTGCTTTTGATATAACAGAACACTATAA 88126 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 15 36 100.0 30 GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Left flank : AAGACGCTATCCTCAACCGTGCGTATTGCTTATATGGTATTACCGCCTGAATTATTAACACGTTTTCATCAACAATTGGGCTTTTACACCTCTACGGTTTCAAACTTTGAGCAATATGTGCTAGCGGAATTTATTCAGCAAGGCTATTTTGAAAAACACATTAACCGAATGAGAGCCTATTATCAGAAAAAACGAGACCATTTGCTCTTTTCGCTCAAAAATAGCCCGCTTGCAGAAAAAATTACGATAAAAGAAGAGAATGCAGGGTTACATTTTATTGTGCAATTTCACACGGAGTTAAGTGATGAACAAATTCTGCAATCTGCCAATGAGCAAGGTATAAAAATGGTGAGTTTAGCTCGTTATTATCAAGATAAAAGCCAAGCACCGAAAAATGCATTTGTAGTGGGTTATTCTAACCTAGCAGATAAACAAGTTGATGAGGTGGTGAGATGGTTGAAAAATATATTTAGTCGTAGAGTACTATAGTTATATATAGG # Right flank : TAGAGTGGTAGGAAAACCTTATGTTATAAGGGGTTATTGCGTTTTTAAGCGATTAAAAAACGTGAAAAAATACCAAACAAGCGGTCTGTTTTTGGAAATTTTTTGCAAGATTTTGCAGAGTTTTGTGAAAACAGACCGCTTATTTTTTTCTGTTTTTTGTGGAAAATTGCCGATTTAGTTTATTTGTGTGAACAAAATATCGCCAGTTGAACAAAAATTTTTGTGTAGCGTAAAAAAATTTTCTTATGGTTGATTTTATTAAAAAAGTAGCAATTGGTTTGCATTGACTTTTTCTTCTTGTGGTTTTAGTTCCCCCACGAGCAACAGCATTGATGTGAACTGTTTTTCGGTGATTTCCAAGCAACGCACGGAGCCTTCCTCCGGCAAATGTGCCGTCAGTCGTTTATTGTGCTTTTCTAATGAATCTCTTCCTCGTACAATGCGGGTGTAAACCGAAAGTTGTAACATTTGGTAGCCGTCTTTCAGCAGAAATTGGCGGA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: F [matched GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.40,-0.90] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [68.3-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0 Confidence: HIGH] # Array family : NA // Array 1 336021-334387 **** Predicted by CRISPRDetect 2.4 *** >NZ_RRUC01000015.1 Bibersteinia trehalosi strain OADDL-BT1 NODE_30_length_646523_cov_359.204956, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 336020 32 100.0 34 ................................ GATGATGATTATAAAAATGTTTTAGCGGACGCTT 335954 32 100.0 35 ................................ TAAGATAGCCGTAAAATTTAACTGTGATTTGCATT 335887 32 100.0 35 ................................ ATATTCGGGTGTTGAGAGTGCTACTCAATTATACA 335820 32 100.0 35 ................................ TTTGGCACTGGCAAACATTAGTCATCTCCCTGTTC 335753 32 100.0 35 ................................ ATTTTCAGCCTGCCAAAATGCCTTTCGATCCATAG 335686 32 100.0 34 ................................ GCCTAATGAGCGAGAAGCACTTGACGCTTTTGCG 335620 32 100.0 34 ................................ ACCATTGATCGCCCACCTGCACCAAAAGATGTAC 335554 32 100.0 35 ................................ TGCACACTCCATAAAATACTGTTTAACACGCTTGC 335487 32 100.0 34 ................................ ATTATACAGATTTAACGCTTTATCATCATAAGTA 335421 32 100.0 34 ................................ TATTTTTAACCGCCTTTGCAATCTGGGCAGACTA 335355 32 100.0 35 ................................ GTGATGGCATTATTGGGAGTTGAGAATATCCCGAA 335288 32 100.0 36 ................................ TGCGGTAGGCGATGAAGCCAATGGCGAAAAGGCTTT 335220 32 100.0 34 ................................ TACTACAACAAAAAGTATAGGGATTTGTGCCTAT 335154 32 100.0 35 ................................ GACTGTGCCGTCCACATCAATCACAAAGTGATAAC 335087 32 100.0 36 ................................ AACAAGAAACCTTATTTGGTTTACTTGATGATTTAT 335019 32 100.0 35 ................................ GTTAAATGTTATGCCTTTCGACAGGAATGCGGGAG 334952 32 100.0 35 ................................ CCTGTGAGTTTAGCCCAATGGGAAAACTCTAACTT 334885 32 100.0 34 ................................ TCGCTACAACACGCACTACTCAAAAACTAAACAA 334819 32 100.0 34 ................................ AGGAATACCCACAAATTCAGGGCGTGAGCGTGAG 334753 32 100.0 35 ................................ CTGTGCAGTGGGCAATGGATAAATTAGGTATTCGC 334686 32 100.0 34 ................................ CTTTTGCACCCTTTTAAAATCCCCACCCCTTACC 334620 32 100.0 36 ................................ TCTGCTGTAACCGCAAGAGCGTCTAACGCTCGTGTG 334552 32 100.0 35 ................................ ACTTGGCGATCTGTTAAGTCTGATTTGCCTGTGAT 334485 32 93.8 35 ............AG.................. ATCTTGAAGTATATCTGGATAGCGTCTCCAGCCTT 334418 32 68.8 0 ......T..AC.AC....T...CGC......T | ========== ====== ====== ====== ================================ ==================================== ================== 25 32 98.5 35 GCAGCCACCTGCGAGTGGCTGTGAGTTGAAAC # Left flank : ACCTTTATGATGATGCTGATTACCTACGATATTTCGTTTGACGACCCCGAGGGTCAAAAACGCCTGCGCCATATTGCCAAACATTGCCTCGACTATGGTATTCGCGCTCAATATTCGGTTTTTGAATGCGATGTCACACCCGATCAATGGGTTAAACTCAAACAAAAACTCCTCGATACTTACAATCCTGAAACAGACAGCTTACGCTTTTACCATCTCGGTAGCAAATGGCGTAATAAAGTGGAACACCACGGCACCAAGAGAGCGGTAGATATTTTTAAAGATACATTGATTTTGTAGTATTGGGAACATCGCTAACGTCTGGTTCTCATCAAAATACGAGGAAACTAGCGATTTTAATTTGTCCTTTAATAATCAATCAGTTAGAAATTTCTCCGAGTACTGCATATCTTATGCTACACTTAAATCACTCCTTTTATTTCAAGTTAGCGAATCACAGAGCGTTAAGCCTTGTGGCACAATGCGTTGAAATATAGGGA # Right flank : ATTGCATAAGAAAACACAAAACAATCTATATTTTCTGCTGAAGTAGCTAAATATCCGTTATAATGTCGCCATTTTTCATCTTATCTTAGAGTAAAAAATTATGATGATGCACTACTCCTCTCAATTTAACCATGCAAAAGTATTAGTGCTTGGTGATGTGATGCTAGATCGTTATTGGTTTGGATCCACAAATCGAATTTCCCCTGAGGCACCGGTTCCTGTTGTCAAAGTGCAGGAAAATGAAGAACGTGCAGGTGGTGCGGCGAATGTCGCGATGAATATTGCTGCGCTTAATGTGCCTGTCACCTTACATGGCTTAGTTGGGCAAGATGATGCAGGTTCAGCATTAGATAAATTATTAAACTCTCACCAAATTCAAAACCACTGCGTAGCGTTGGATAGCCATCCAACTATCACTAAATTACGCATTCTTTCCCGCCATCAACAGCTATTGCGTTTAGACTTTGAAGAAGGTTTTCATAATGTTGATAGTAGTGAGT # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCAGCCACCTGCGAGTGGCTGTGAGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GCAGCCACCTTCGGGTGGCTGTGAGTTGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.50,-4.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [12-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.65 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 346122-344957 **** Predicted by CRISPRDetect 2.4 *** >NZ_RRUC01000015.1 Bibersteinia trehalosi strain OADDL-BT1 NODE_30_length_646523_cov_359.204956, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 346121 32 100.0 35 ................................ ATTTTAATGCTGGTTGCAATCGTGGGAATTTGCAA 346054 32 100.0 35 ................................ AAGCAAAAGCAGATAGCGGTTTAGCAGAGGCTATG 345987 32 100.0 34 ................................ AAACACTGGATTGGTCAAGGTGGAATGTTCCCCG 345921 32 100.0 33 ................................ AGTTACAACTGGCATACCTGTTGTATCCAATCT 345856 32 100.0 34 ................................ GTATTAAGGATTTAATCAAATCACTTGAATCACT 345790 32 100.0 35 ................................ GCTGCACAGAACTTGACGATGACACCTACCTTTGG 345723 32 100.0 35 ................................ TTTGAGATGGTACAGATGTTTGGAAAATACAAAAT 345656 32 100.0 35 ................................ ATTTCACACCTGTGATCGCCGGAGCTGGTAAAGCC 345589 32 100.0 33 ................................ AACAAAAGGAGAAATGCGTGCGGATTTTTATGC 345524 32 100.0 34 ................................ TTAGATCTAACAGATAATATTTAATAGAATTTAA 345458 32 100.0 34 ................................ ATATAACTGAGATAGCTTGTGCCATTAAGCTTAA 345392 32 100.0 35 ................................ GTGCAATTCACGCGCGGAAAGCGTGGCAAATTCGG 345325 32 100.0 35 ................................ GTTGCGGTAGTAGCTATCTTTCACAGCTTTCAGCT 345258 32 100.0 36 ................................ TCACAGTAGCCCGAACGATCTGTTGTACTATTCGGG 345190 32 100.0 35 ................................ AGGTCGTTGCTGCCTTAACATCTCGCCGATGCCGA 345123 32 96.9 35 ........A....................... CAAGACAAGACGATGATTGATGCAGTGCGTAACGG 345056 32 100.0 35 ................................ CGTTCTAAGATGGAGAGAACAATGAAAAAAGAAAA 344989 32 90.6 0 .........................C.A...T | G [344967] ========== ====== ====== ====== ================================ ==================================== ================== 18 32 99.3 35 CCAGCTACGTACGCGTAGCTGTGAGTTGAAAC # Left flank : AATCCTCCAATTATTGTGATTCACGGTAACCAAATTGAGCGTTTACCCGATAGCTATAAACGTTATTTATCAAATTATTATCGCAAGAGCCTAAAAATTATCGGCTCACCGATTCGAGTGCTATTCCAAGAAGGTAACAACCCCTTTGCCGGCAAGCGCAATAAACTCACACCAAGCCAGCTTCGAAAACGTAAACGCTTGATGAAGTTTATTAAGAAAAATCGGAAGTAACTTATTTGCACCTCAATATCCTTAGTATTGAGGTGCTATTTTCTATTGATTTTCTCAATATATCCTACCGATGTATAATTCGCTATCTCGGAGTTCTCTCCAAAATCGTATTAGGTTAGCGAATTTCATTTTTCCTCAATAATTCAATATGTTAGCCTATTCACGCTATTTTATCTTTAACCTTATGCTATACTGAATCAGCCTATTTTAGGATATTAGCGAAAAAGAGGTTTTCGAGCCTTGGTTTGTAATGCTTTTTACCATAGGCA # Right flank : ACTTTTTTCACAAACAAGAGTCTATTTAGTGCTTGCTCTATATTGCAAAATAATATGTATATAGCAACGCCCCCTTTGATGAATCTAGATAGCATGCGATCTTAGGAATAAGCATTGTAAGTTCTTGTATATAATTGTAGTATACATCATCCATTCTCTGCATAAATTTACGAGCTTTAACATGAGTAAGACCGAATTTATCGCCCATGTTCGCGAATCCGACAAAAGATTACAATCTGTTTCTAACCACCTTTTAGAAACCGCCTCTATTGCTCGTACATTAGCAGCTAAATTAGATTTAGCTGAAGCTGGGGAATTGATGGGGTTAATGCATGATTTCGGTAAATATTCTGAGAAATTTCAAAAATATATTCGTCGTGTTACGGGGATGCTAAGTTATGCAGATTTAGATAGTGAAGATGAAAATAATGGCGGAGATCATTCAACTGCCGGTGCTCAATGGATTTATCGCCGTTTAAGAAAGTTTGGCGCAGCTAAAA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCAGCTACGTACGCGTAGCTGTGAGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [7,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CCAGCTACGTACGCGTAGCTGTGAGTTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-1.60,-2.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.65 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //