Array 1 26178-26522 **** Predicted by CRISPRDetect 2.4 *** >NZ_QRMG01000016.1 Bifidobacterium longum strain AM10-15B AM10-15B.Scaf16, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =========================== ====================================================== ================== 26178 27 66.7 39 G..C....C.....C...GCC....GA ACCGCCACGGCGGTCATCACGATCGCCACGGTCATCGCG 26244 27 96.3 54 ........................A.. ATCGTCACGGGAGTCGCGAGCATCACGGTCATCGCGATCGTCGAAGTCACGGTC AGA [26250] 26328 27 81.5 33 GG.A..A.................A.. ATCATCGCGATCATCGCGATCGAAGTCACGGTC 26388 27 100.0 21 ........................... GTCGTAATCATCCTCGAAGTC Deletion [26436] 26436 27 100.0 30 ........................... GTCACGATCGTCGAAGTCACGGTCATCGCG 26493 27 81.5 0 C.............C.....C....CG | GC,C [26510,26514] ========== ====== ====== ====== =========================== ====================================================== ================== 6 27 87.7 36 ATCGGAGCGACGGCGACGCGGACGGTC # Left flank : CATACGGCATAAAGGCCGGGCTCTCACAAGGGCCCGGCCTTTGTTGTTGCCACAGTGATCAACGCCCATGAGTACCTTCGATGATCATCCGCCATTCTTGATGCATGGGAATAGTTGTCAACCGACAACTAAACGTACATGGCGGCAGCACGAGTGCCTTATTCAACATCGAAATATGCAGCGCGAAGAAGCCGAAAAACCAAAAAGGCTTCTATACCGAATGAAACGGTATAGAAGCCTTTTGGTTTGCGATCAAACCCTTCTCACCCGAGAGAAGCTAGAGAACGATCAGTCCTCGAATGCCGAACCGTTAAGCGGGAAGCCCTACGGGCTTCCCGTAGGTGAGGGGAGCGGCTATGCCGCGACCGATCCGTGAGAGGGATTTAGTCCTCGAACGGATCAAAGTCGCGACGGACGCGGCGACGCGGGCGCTCAGTACGCTCTTCGCGGTCGGCGCGGTAGTCGTCGTAGTTGTCGTCGGTGGCGTAGCGCGGGTTACG # Right flank : GATCGTCACGGTCACCACGGCCACGGCCGCCACGGCGGTCATCGCGATCGCCACGGCTCGGGCGGGCGTTGTTCTCCTGATCCTCGAAACCAGGAATGGCCAGGGAGATCTTGCCGCGATCATCGACACCCTGAACGATCACCTCAACGGTGTCGCCTTCCTTGAGCACGTCTTCGACAGCGTCAATACGCTCGCCGTTGGCTAGGTTGCGGATCTGGGAGATGTGCAGCAGGCCGTCGGTGCCGGGGGTGAGGTTCACGAAAGCGCCGAACGACGTGGTCTTGACGACCTTGCCGTTGTAGGTTTCGCCGGCCTCGGGCACGTGCGGGTTGGCAATCTGGTCGATGATGGCCTTGGCCTTCTCAGCAGCCTCGCCACCCTCGGAGGAGATGAAGACGGTACCGTCATCCTCGATGGCAATTTCAGCGCCGGTGTCTTCCTGAATCTGGTTGATCATCTTGCCCTTCGGGCCGATGACTTCGCCGATCTTCTCAACCGGG # Questionable array : NO Score: 4.79 # Score Detail : 1:0, 2:3, 3:0, 4:0.45, 5:0, 6:0.25, 7:-0.43, 8:0.6, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATCGGAGCGACGGCGACGCGGACGGTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,0] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGGAACGACGGCGACGCGGACGATC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.40,-0.30] Score: 0/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [31.7-30.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.41 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 67536-63109 **** Predicted by CRISPRDetect 2.4 *** >NZ_QRMG01000002.1 Bifidobacterium longum strain AM10-15B AM10-15B.Scaf2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================== ================== 67535 36 100.0 36 .................................... GCAGGGCATCGCGACCATCGCATACCCGCGCAAGCA 67463 36 100.0 35 .................................... GCTGACGACGTACTCGTGGAATCCGATAAGAGTTT 67392 36 100.0 35 .................................... TGAAACAATGCCGGGCGTCAGCCCCAAGGCGCGAG 67321 36 100.0 36 .................................... GTAAGTTTTGCATGTCCGTGCGGTTTTTCGATAAAA 67249 36 100.0 36 .................................... ACGAAACAGGAGACCTAGCCGACCTACGCGACGGAT 67177 36 100.0 35 .................................... GCAAGCGGGGCAACCGGATTGAGCAACCAGCTCAG 67106 36 97.2 35 ...A................................ TCTGAGCAACGGCATCATGGGCGTACTGGTCAGGT 67035 36 100.0 34 .................................... ACGCTGCCATGTGCGCCGCGAACGATGTGGAACG 66965 36 100.0 36 .................................... ACAAAAAATGAAAGCGACAATCGTTATCTACAAATA 66893 36 100.0 36 .................................... CCGGGCAAACGACCATTGCCCGAATACTGGCGAATC 66821 36 100.0 37 .................................... TTCGTCCAGCGTGTCGAATACGTCAACGCCCATTGCA 66748 36 100.0 35 .................................... ATGTTCGTCGTGAGCTTGACGATCTCGCCGTCCAG 66677 36 100.0 35 .................................... GATGAAATGCACGTCTTATATGGGGAGGGTACCAC 66606 36 100.0 35 .................................... GCCTGAGATGCACGCTGGAAAACACTCAACGGGTT 66535 36 100.0 36 .................................... ATCACATTGTTTCTGTTTCGCCAAACAGCTCACTAA 66463 36 100.0 36 .................................... TTGACTGGATATGTGATGTCTGCGGATAAAGTAATC 66391 36 100.0 36 .................................... CAAAACCCAAGAGAACAAAACCCAAGAACAATCCCC 66319 36 100.0 35 .................................... ACGAGCCGCGAGGACCTCAGGGCCACCGTCGCCAA 66248 36 100.0 37 .................................... CTTCGTCAGATCGCTCGACTGGTCCGGGCGAGGATTC 66175 36 100.0 35 .................................... CAGTGGACGACCACGCGGGCCGCCAAATCACCCTT 66104 36 100.0 35 .................................... GGGCCTTCAACTTGTCGACCTCCTCCTGACGGGAC 66033 36 100.0 36 .................................... GCAGTTCGAGTTTCCGGCACGTGACAGGCAGTGTGA 65961 36 100.0 37 .................................... TCGAGCAGGTAGGGGCTGAGCTTGTCTCGGTGGTCTC 65888 36 100.0 37 .................................... CTATGGGGCGCTACTGGTGTCGGAAAAACCCGACATG 65815 36 100.0 36 .................................... CGGACATACAGGGGTTCAGGCGTCACCCAAGCCGCG 65743 36 100.0 35 .................................... ATTCAGGGCGTTGCCGCATTCGTCCGCGAAGTCGA 65672 36 100.0 37 .................................... GGAGTCCCGACCGTATGGTTGCAATTGGACTGAGATG 65599 36 100.0 36 .................................... TCCTCCATTCGGTCCATCTCGTCTTGCAGCAGTCTT 65527 36 100.0 38 .................................... GTTGATGATCTTCTGGTTCGCTCCGTCGCGCCCGCCAA 65453 36 100.0 36 .................................... ATGCTGGAAGGTAACGGCGTAGGGCATGGCAGAATC 65381 36 100.0 36 .................................... TGGGTGCCCTTGCGCCAACACTGTCTTTCGCGCAGC 65309 36 100.0 36 .................................... GACTACAGCAACGCAGAGACCGCCGAACTGAACACC 65237 36 100.0 35 .................................... GTTGGGAAAACCCACACGTTCGTCCCCGTTGGATA 65166 36 100.0 34 .................................... GCACAAAAAGCTGCCCCCTGCTCAGTGGCGGGAT 65096 36 100.0 37 .................................... CCGGACGTACTGGTGTTCTTCAATGAGACGGCGAGCG 65023 36 100.0 36 .................................... AAGCCCCACGGACGTGCCCCGCCATACTCAGGAGAA 64951 36 100.0 40 .................................... CCGCTCCGGCGGCCAGAGTGTTCGTGGCCCATGAATGGCG 64875 36 100.0 37 .................................... TCTGTCGAGTCGCATTCCGCCGATGACGCTGCGGACG 64802 36 100.0 38 .................................... GCCACAACATAGGGACAACCATAATGCGCGCGTTCGGG 64728 36 100.0 36 .................................... AACATTGGGCACCGACCCGGGTGTTCTGGTTACGGA 64656 36 100.0 36 .................................... ATAATAGTAGGGCCATACACCTTATTAGTGCATGAC 64584 36 100.0 37 .................................... CCGTTACAGGGCGTATGGGGTGGCGTGAACAGGAGTA 64511 36 100.0 37 .................................... AAGCCACATCAGCCGAGAACAATGCGTATCCTTCTTC 64438 36 100.0 38 .................................... CCGCCAGCAGCGTGCACTGTTACGAGGCTTCTACGGTC 64364 36 97.2 37 ................T................... GCGTTCCAACGGTCCATGCTGCCGTTGCCGTGCGGCG 64291 36 100.0 35 .................................... ATGTTGTCGAATCCACGTTTCTTTCTCTTGCGGTT 64220 36 100.0 37 .................................... GTTACCGGAATTGTCAAGGCGATACTTGGGCAACGCA 64147 36 100.0 36 .................................... AACCAGTTCATCGACATCCTCGTAAATCGTATCGGC 64075 36 100.0 35 .................................... TACGGTCACCAGTACCAAGTCACAGGGTATGAGTG 64004 36 100.0 37 .................................... GTGGCTAGCGCTAACGGTAAGTGTGTTGTCGCGTATC 63931 36 100.0 35 .................................... TCATCGACCACGTAGTCAAGTCAAAGGACAACCGG 63860 36 100.0 36 .................................... TAAGCGACCAGGACGCGAGGACCGCTAGCGAACGGT 63788 36 100.0 35 .................................... AACAGTTGCACCATGCAACAATATCCAAACTTGAG 63717 36 100.0 37 .................................... TCGGTAATCCAGCAGCCGGATATGCCGACGAATCGGC 63644 36 100.0 35 .................................... GCGAGTGCGATGTGCATGTTCCCGTAGTTGTCGAG 63573 36 100.0 36 .................................... GGCGCGCGTCTGCACATGATTGTCGTCCCGCCCGGC 63501 36 100.0 35 .................................... CGCAACATCGGTCATACTTGGTTCTGTGTCCATCA 63430 36 100.0 37 .................................... CTCAATATCTGGACTCAGATATACGGCGCGCTGGGTA 63357 36 100.0 35 .................................... GACATGCCGTTGTATCGCATCCCGTTGGACGGTAT 63286 36 100.0 35 .................................... CATGAGATAGGCGTATTGCGATACAAAAAAGCCAA 63215 36 100.0 35 .................................... TTGGTGGGGGCTAGCTCGTCGTGGCATATGCTGAC 63144 36 97.2 0 ...................................G | ========== ====== ====== ====== ==================================== ======================================== ================== 62 36 99.9 36 CTTGCATACGTCAAAACGTATGCACTTCATTGAGGA # Left flank : GAAAATCCATACGGCTTATTTAAGGAATGTGATTTATTTTTTCGCGATATGCGATAGATGTTTGATAACTAAATAGTGGTACTAAGATAAGGGGGGTGCGGATGTTTTTTTTGACGGTCAGGCGGCCAGTCCAAGGTGTTTGCGGTATTGCACGGGGCTTATCCAGTCCAGTGACTTCTTGATCCTAGTCTCATTGTAGTGGGTCAGGTAGGTGTATTGCTTCAATGTTTGTTGGGCGGGTTCGGCAGTGTTTTTCCGCCCCTTACGCTTACGAAATCAACGGCTCGACGACGAACTGACATCCACGAAAACAGCAATAGCGCCTATTGTTTTTGCGAGATCTGAATCGCTCCTGAATGAGCTACTAGGCATTCGCAATGAGAATATAGCGGTTCTGTGGATCTGAGAATCGAGATTGCTATGTTAGAGGACGTAGCCGTCCTCCACCTCTCGCAGTTTTGTCGGGAAAACCTCCAGTGATACTATAAATTCGAGCCTGC # Right flank : AGTGTGAGGCATGAAAGAAAACTCTTACACTCTGGCCTTGCATATGATGTGACCTGGTTTTTTGTTCCGCATCTCCTATCAAGTGAGAGGAAATGCGGAACAAAAACCAGGTCACATCAATATCGATACACTTCCGTGTGAAGCTCGTCATAGTGGATTGCACGAAAAACAGGTAGGGGGCTTTCCGCCATCAACAGCGGAAAGCCCCCTATTCTTACGGTCTATCTGCCCTAATTAGAGTACCTCACTCCGCAGCAATCGCGGCCTTGAGCTCCTCGACCTTGTCGGTCTTTTCCCACGGGAACTCAACGTCTGTGCGGCCGAAGTGGCCGTACGCGGCGGTATTCAAGTAGATCGGGCGCTTCAGGTCGAGCTCGTCGATGATGGCGGCGGGGCGCAGGTCGAAGACCTTGCGTACGGCGGCGGCGATCTGGCCGCGCGTCACGCCTTGCTCGGTGCCGAAGGTCTCCACGTTGACGGATACCGGGTCGGCAACGCCA # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTGCATACGTCAAAACGTATGCACTTCATTGAGGA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-3.90,-4.10] Score: 0/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA //