Array 1 44476-43773 **** Predicted by CRISPRDetect 2.4 *** >NZ_MUMG01000037.1 Crossiella equi strain NRRL B-24104 NRRL_B-24104)_contig_37, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ====================================== ================== 44475 28 100.0 33 ............................ GAACAGTGCTCACACCTGTTGGAACAGATCCAA 44414 28 100.0 33 ............................ CTTGATCAACAACATGGTGGGGGAACCGCGGTG 44353 28 100.0 33 ............................ CATCTACGCCGCGCTGCGCCCCATGATCGAGGG 44292 28 100.0 33 ............................ GGTGGGGATGGACTCCACGGTGCCGCTGGCGGC 44231 28 100.0 33 ............................ GGGGGATCTCAACCATTGGACCGGTTGGCAGGT 44170 28 100.0 33 ............................ GCCTTCCGGCGTCGCACCGAACCGAAGGGGCTC 44109 28 100.0 33 ............................ CGCACCTCGGCGGGCAACGCGCACTCCGCCTAC 44048 28 96.4 33 ....C....................... GAGCGGAGCAAGCTCCTTCTCGAAGGTCGACGA 43987 28 100.0 38 ............................ GGGGAGGAAGGGTAGAGGGGGTCACCCGAGCGCAGGTC 43921 28 100.0 32 ............................ GTGGACCGTGGTGTACACCGCGTGCCGCCTGG 43861 28 85.7 33 .GG.........TG.............. AGGCTGCGGGCCGACGAATTCGCGGCCGTAGGC 43800 28 82.1 0 .........C...GT......C....T. | ========== ====== ====== ====== ============================ ====================================== ================== 12 28 97.0 33 GTCGTCCCCGCACACGCGGGGTTGGTCC # Left flank : GACAGCCAACCAAAAGATCAAGGCGCCAGCCCCCGGTAGACGACCCCGCACGGACCGCGAGACGCGCTGGAAGGCGACCCCCCCACGAACAGCAGGGGGGCCGGGGGGCAGCAGCCCCTCCGGCAGGGGGCGCGGGGGCTTGGCCCCCGCTGTGAATGCGAAACGCCCCGGTTCGCGGAACACGAACACAGGGCGCCTGGCGTGGAGCGGGTGACGGGAATCGAACCCGCCTCTACAGCTTGGGAACCCGTTGCGGCACACCAGGTAGGGCCGCTGACCTGGGCTTGAGTGCGGTCGTCGTTGGCCGCTATTGACCGCTGCTGACCAGTACTAACAGCACGTGGACAGCACGTCTCCGAGGTCCTGGCTACTTGGGTACGCCGAGCGCCTCGGGCTCGGTAGGGACCATCCGTGCCACGCTCGTACGTGCTGGCTAGCGGCCTGCCATGAAAGTGATGCTAATTCGGGGACTGGCTCGGTATCGTGGCTGGTCAGGAAGT # Right flank : GGGTGGGTTGTGTTCTTCTCCCCCGCTGAGGGGGCTCGCGTCATCCCGTCGACCTGGCTCGCCCCAACCACGCGGGTCAAGGGGGCACCGTGAGCTCACAGACGGCTGCGCTGGATCGGCCCCCTTGACGCGTGTGGTTGCCCTCGGGGAGGTCGACGGGATGAGGCGAACCCCGGCCCACGCTGTCACCGCGGCTTCGCCCGCAGCCCCGTCATCCTGGAGACCTGCCCGTCCGGCGAGGACATCTTGTGCTCTTCGGCTCCTGCGGGGCCGGTCGGGGCCGTTCCCGGGGCGCGGCGGCCGGCACTTCGGTACCTCGGCGGAGCGCCCGTGGGCCGCAGGCCCGCTGGGGCGCTCCGCACAGCTCAGCGAAGTGCCGACCGCCGTGACCTGGTGACTGAGCACGGCCCCGAGCGGCCCCGCAGGGGCCGCCTTGAACAAGTAGAGAAAATCCTCACCGTGGCCCCGACAACCACGGGACACGGGCTGTCAGGTCACGG # Questionable array : NO Score: 6.11 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGTCCCCGCACACGCGGGGTTGGTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCACACGCGGGGTTGGTCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [31.7-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,5.18 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 11803-13114 **** Predicted by CRISPRDetect 2.4 *** >NZ_MUMG01000123.1 Crossiella equi strain NRRL B-24104 NRRL_B-24104)_contig_123, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 11803 29 96.6 32 ............................G TCGGCCAGGCGCTCCGCGCGTTCACGCGTGAT 11864 29 100.0 32 ............................. TGAACCGGGCAGTCGCCTTCGCCCGAGACCTG 11925 29 96.6 32 ............................G CCCGGCCTGTTCGGCTCCACCATCGAGGTCGA 11986 29 100.0 33 ............................. CTGGCCTGATCAGAATCGCCCTATCCCCCGAAA 12048 29 100.0 32 ............................. ACCTGGGACGAGCCCGCGCTGGTCCCGCCGTG 12109 29 100.0 32 ............................. GCGCGGTACCGGCCGCCGCCATCCCGGCCGAC 12170 29 96.6 32 ............................A CCATCGAAGTACTTCTGGAACGCGTAGTCTTT 12231 29 100.0 32 ............................. ACGGCCCGGCAGAGGCTGTGGACGAAGTCCGG 12292 29 96.6 32 ............................G CGGGTCAGCCACAGGGCAGCCTCAATGTGAGT 12353 29 100.0 32 ............................. CAGGTGGCCCGGTCGCTGCACCAGGAGACCCC 12414 29 100.0 32 ............................. GCCGCCCCGGCCGGGGAAGTGCTTTTCAGCCA 12475 29 100.0 32 ............................. TCCGACCAGGCCGTCGGCTGGCTCGAGGTGAA 12536 29 96.6 32 ............................G CGCTGTCCACGGACAGCGTCCCGGCGGACAGC 12597 29 96.6 32 ............................G TCGCCGATCCTCCGGCGTGGCTGGAAGAGCTG 12658 29 96.6 33 ............................G GTCCTGGGGACCTTGAGCTTCTGCGGCGGTGCC 12720 29 100.0 32 ............................. TGCTGGCAGTTGCCGTGGGCGAACCAGTCCAG 12781 29 100.0 32 ............................. CCGGAGAACCCGCGGCCGAACGATCTGCAGAT 12842 29 100.0 32 ............................. CCGGAGAACCCGCGGCCGAACGATCTGCAGAT 12903 29 96.6 32 ............................G AGCCACCGGGCGACCGGACCACACCACGTGGC 12964 29 96.6 32 ............................G GCGAGAGGCTGACGTGGCATACGAGCGGGTTG 13025 29 100.0 32 ............................. AGCAGCCCGCGCGCGACCTCGCGGCCGTCGGT 13086 29 86.2 0 ............T........C....T.G | ========== ====== ====== ====== ============================= ================================= ================== 22 29 98.0 32 GTCGTCCCCGCGCAGGCGGGGTTGGTCCC # Left flank : ACGATGTTGAGCAGCCGGAACTACCTGCCGGGGCGAGGTCGGGTGTCCGTGAGCCAGAAGCACGGCTCCACCCGAAGGACAAGGTGGCCGCTTGGCAACCCGAGCATCGGGATGCCGGTGAACGGACACAGGATGCCCTCCTTGCTCAGGCACGGCACGAGGATGCGGCTCATCGTGCCGTGCACCAGAAACCGATATCAGCCGATGCCCTGCGCATCCAACTCGGCGTGGGCGCGGCTCGCGCCAGAAGGCTCATCAAGATCATCCGTGCCGAGTTTGAAGAGCAGACCCGCGCCTAGCGAAGCTTCGCAACGTCCACTTGATCGCGATGATCTGCCGCGATGTGGGACGAATCGACATCGACAGCCGCGACGGCTCTCCGAGGTGCTCAACAGGTTGTCGCAGGCCGTCGGTCACCCAGTGCCGTTAGGTACATCATCCCGGTGATGCAAGTGAATGGAAAGTAGCCTGAGGTCGCGTAAAGTGCCAGGTCAGAAAGT # Right flank : GACGAAGACTCCCCGTCTTCTTCCATGAGCAGTCGTCTCCACAAAGGGAGAAGGTGATGTTGAGTCCATTCCACGCGACCGCACTTACCAGCTTCGTGACGTGGTCCGCAGCCGAACCAGTAAAAACTACTCGATGGCAGTGTCGGGCAGTTGAGTCGCTAACGGCGGTCCGCGTTCCGCCTACAGATACCTCGGGCGGTGGCCGTGGTGTTCTTGTGTTGAGGTCAGGAACTGGCGAGCTTGAGGTGTCGGGTGAGTTCGAGCGGCCTGCTCAGTGTGAACCGGCCTCCGGGCAAGCACGTGGGGCGTCGAAATGGTAGTGACGCGGTGCGTTGGCACCTCCGGTTATGGCCGCGAAGAAGGCGTTCACGGCGTGGGATCCGTTGACTTGACAGTGAGCCTGTGGCGGATCGCACGTTCGGTCGGACGCATCCGACTGAGACTTCCGTCTACCTCGGACCAGTGACACAAGCGAAAAGCGCCCAATGGTGCCGCTCTTG # Questionable array : NO Score: 6.05 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.89, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGTCCCCGCGCAGGCGGGGTTGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGTCCCCGCGCATGCGGGGTTGGTCCC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.20,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [48.3-46.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 22616-24047 **** Predicted by CRISPRDetect 2.4 *** >NZ_MUMG01000123.1 Crossiella equi strain NRRL B-24104 NRRL_B-24104)_contig_123, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =================================== ================== 22616 29 100.0 32 ............................. GGCGAGGCCGAAGGTGCGGAAGTCCAGGCGGG 22677 29 100.0 32 ............................. TGGGGGCGCGGCACGGAGGGCACCGGGGCCCA 22738 29 96.6 32 ............................T CCGTACCGGGATGAGGACTGGGGTTGGCTGCG 22799 29 96.6 32 ............................G TCGAGATGTGGGTCCGCATCATCGCCTGGTCC 22860 29 100.0 32 ............................. CGGTACCTCGTCTACGTGGCGCACCGGTACGG 22921 29 100.0 33 ............................. GTGAACTGGCGGTAGGGCGGGCCGACCTTCTCG 22983 29 96.6 32 ...T......................... GACCCCAGGTCCTACGGGATCCGGTACGTCGA 23044 29 96.6 32 ............................T GCGGGTCGACTCCGACCAGGTCCCATCGACCT 23105 29 96.6 32 ............................T TCCAATGGGTCGGACGATTCTCAAAGCGGCGG 23166 29 100.0 32 ............................. ACCACCCGCGACCAAGGCGGCCCGGTGGCCCT 23227 29 96.6 32 ............................G GCGTCCTGAACGTGCACAAGCGGACGGTGTGA 23288 29 96.6 32 ............................G CGGCGTCGCCGCCGAAGAAACGTGCTCGGCCC 23349 29 96.6 32 ............................G ACCAGTGCGGCCCCCGTGGCACCCACCAACAA 23410 29 100.0 32 ............................. CGGCCGCACCGGTCGCACCGGCCGCAACCTCA 23471 29 96.6 32 ............................G GTGAAGGACTGGTAGACGTCGGCGGTGAACTC 23532 29 100.0 32 ............................. CGCATCACCTGGTCGGTGCGGCCCTGGCGCAG 23593 29 100.0 32 ............................. CTCGATGGTGCGTTCGCCCTGGTGCCGAAAGC 23654 29 96.6 32 ................T............ TGCTGTCAGGGCCAGCAGGCCAATGATCTTCG 23715 28 96.6 32 .....................-....... CGCCAGGACGCCGCCTCGGGACGGCTCGCGGC 23775 29 96.6 32 ............................G GACGAGGGCCTCGCCGAGGCCCGGCGGCGTTT 23836 29 96.6 35 .....................A....... AGCGTCAGCCTGGCCTGGGACGCCCCTGTCCTGCA 23900 29 86.2 31 .......G.......A.....T...C... TGCGCGAGCCACGGCATCGTCTTGTCCTCCG 23960 29 86.2 31 ..CG............A...........G GACACCGCGCAGGAGCTCGTTCCCGAGCGCA 24020 28 75.9 0 CGT.GT......T....-........... | ========== ====== ====== ====== ============================= =================================== ================== 24 29 96.0 32 GTGCTCCCCGCGCAGGCGGGGGTGGTCCC # Left flank : TGGCGGTGACGTGGTGATGCTCTGGGATGACAACGGCCGTGCCGTGCCCGGTGGGGTGGCCTATGAGGAGGAAGCGTGACGGTCATCGTGGTCGCGGCCTGCCCGGTGGGCTTGCGCGGGCACCTGACCAGGTGGTTGCTGGAGATCTCACCGGGTGTGTTCGTCGGCCGCACAACTGGCAGGGTGCGGGAGTTGTTGTGGGTGCGGGTGGTGGAGATGGTCCGGACCGGCCGGGCGATCATGGTCCATCACGCCGACAACGAACAGGGCTTGGCCTTCAAGGTCCACGACCACAACTGGGTTCCGGTGGACTTCGAGGGCATCAACCTCATGCTCCGCCCAGCGCCGGGTGCGAGGCCTGCCTCCGGTTCCCCGGAGGCAGGCGGCAAGCCGGGTTGGAGCAACGCGAGCAAGCGACGACGCTTCGGCCGCCGATGAACAGCCCGATGAAAGTGAATGAGAATCGACCAGGTCGCGCATAGAAGCGCTGGTCAGGAAGT # Right flank : CACCGTGGTCCTGCCCAGCACTGGGCGCATGCATGGTGTGTTTCCCACGCAGGCCCCAGAAAGTTGTTTCTATCGGGGTCCCAGGCGACACGAGCAGTGACCAGCCGGGGCGAAGTGTGCCTTGCCCGAGCTCTCCTCATCGGCCTCGGCGGAGTGGCTTGGAGAAGCTGGTCGACTTGGACGTGCGCGAGATTTCGGGGCCTGATCCTGCGGCCGACCTCAACGCTCAGCGGGACGTGCCCGATTGGCACGCCGGAGGTGCGGCGCGCAGGCAGAACGACGTGCCTACGTAGGAGCCGGAGGAACTTGGCGGCTAGTGAGCTGGTCTTGAAGTTCGTTTGCTGATGTCGTTGCGTGTCCGTGTCAGCGGTGGACAGTGGTGGTATGGCTGGAAAACCGCAGCAAGAGCTTGTTCTGACCGATGAGGAACGGCGGGTCCTGTATGGGTGGGCGCACCGGCGCAAGACCGCGCAGGGCCTGGCGTTGCGGGCGCGGATCGT # Questionable array : NO Score: 5.53 # Score Detail : 1:0, 2:3, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.47, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCAGGCGGGGGTGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGCAGGCGGGGGTGGTCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.90,-11.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-20] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [46.7-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 1760-511 **** Predicted by CRISPRDetect 2.4 *** >NZ_MUMG01000376.1 Crossiella equi strain NRRL B-24104 NRRL_B-24104)_contig_376, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1759 29 100.0 32 ............................. CATGCCCTCGGACTGTGGGGCCGGAGCCAACA 1698 29 100.0 32 ............................. GAATACCAGCACCGGGTGCCTGAGGAGTGGTC 1637 29 100.0 32 ............................. GCCCGTGGCCTGTACCTGGACCCGGTGGAGAC 1576 29 100.0 32 ............................. AAGGCATCGTCCCCGGCGGGGATGTAGGACAG 1515 29 100.0 32 ............................. CCCGCGGTGCTGGACCTGTGGATCGCCAACCC 1454 29 100.0 32 ............................. CGCTGGGCCTGGGCGATGGCTTCGCGGCCGCC 1393 29 100.0 32 ............................. GCTGGGTACGTGCGGTACGCCACGGTGGTCCG 1332 29 100.0 32 ............................. ATGCCGACTGGACCATGCCGGTCATCGGGATG 1271 29 100.0 32 ............................. GAGAGCGCGAACGCGCCGACCGCGGCACCGAG 1210 29 100.0 32 ............................. CCGGGTCCGGTCCTGCCGAGGTGCTCTCCCGC 1149 29 100.0 32 ............................. GCGCCTCGGCCTCGTACGCCAGGGCCACCTGG 1088 29 100.0 32 ............................. GCGCCATCGTGTCGCGTCCGCCCCTGGCCGCC 1027 29 96.6 32 .........G................... GGCTTCGTGCTCGGCCAGGAGTCCATGCCGGT 966 29 100.0 32 ............................. CCGCGGCCCGCGCTCCTCGCCGCGCTCGCCAC 905 29 100.0 32 ............................. GAAATCAGGGTGTCCACACTGGACGATCATCG 844 29 96.6 32 ....................A........ TGGATGCCGCACTGGGCGTACGTCCTGGAGGC 783 29 100.0 32 ............................. GCCACCACCGAAGAGCGTCACACCCTGCATGA 722 29 100.0 32 ............................. GTGCTGAGGTCGGCTCGATCAGGCTGGGGAGG 661 29 96.6 32 ...........A................. GCCATCACCACCAGACCCAACCCTGTGCTGAC 600 29 89.7 32 ...........A.A..........C.... GCCGCGCTGGACCAGGTCCGCACCGAACTCGT 539 29 82.8 0 ...T.....G...A....A.....C.... | ========== ====== ====== ====== ============================= ================================ ================== 21 29 98.2 32 GTCCGCCCCACGCCCGTGGGGATGTTCCG # Left flank : CGCCCGTGGGGATGTTCCGCGCTGGGCCTGGGCGATGGCTTCGCGGCCGC # Right flank : GCCGCCCGCAGGGCGGGGCTGCCCGTAGTCCCCGTCGCCCCAGATACGGGGGGGGATGCTCCGAGGACAGTGAGGCGGCATGGCTAGTCAGTCGATCTTGGTAATCACCAAGCCAAGCTGATCATCCAGAGTAAACGTCCGCCTGCCGATAACCACCGCCCCTGCCGCAGTCCCCCGCAAAGGCAACGGGATGAGGACAAGGTCTCCAAGCCACGGCGTCTTCTCCCAACTCACTGGACGCCGCCCGTGGCCCTCGTCCTGGTGCTCGGTCAGCAACGACGCCCGGACCGGAATAGACCGAGCCATCACCATCCGCACCACCACCGCCGACGGCCGGGACGACGCCGAGGCCTCCTCACCCGGCAAGGCCACCCAGCGGTGCCGGTCCAGCCACCGCCGCCCCGACTCGTCCACGAAACAACACACCACCCGCTGGGTATCCGCCCCCAACCGGGTCGTCAGCTCCACCTCCCAGTCCTCCAACGGCCCGGCCTCGGCCA # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCGCCCCACGCCCGTGGGGATGTTCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCCTCCCCACGCACGTGGGGGTGTTCCG with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.60,-11.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [21.7-18.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 3765-2576 **** Predicted by CRISPRDetect 2.4 *** >NZ_MUMG01000132.1 Crossiella equi strain NRRL B-24104 NRRL_B-24104)_contig_132, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 3764 30 100.0 31 .............................. ACCCTGCAGCAGGTGACGACGCTCCGGCGCG 3703 30 96.7 31 .......................A...... TGGCGATGCAGTACCCGCCGGGCTCAGCCAC 3642 30 100.0 31 .............................. CGCCGGTGAAGTCGAAGTGCACGCGGCCGGG 3581 30 100.0 31 .............................. TTGGCCTGCTGTCGTGGATCGTGGGTGTCAC 3520 30 96.7 31 .............................T TTCAGGCAGGCGGGCCAGCTGGGCATGCGTA 3459 30 96.7 31 .............................C TCCGGTAGATGCCGAGCTTCATCGCGTCCTT 3398 30 96.7 31 .............................T GCTCCATCCACGCTGTGGCCAGCCAGCCCAG 3337 30 96.7 31 .........G.................... CTTACAGGTTCGTAGTGTCTGGCCCGCTCCA 3276 30 96.7 31 .............................T GGATCGACAATCCCGAGACCGCCGACTTCTG 3215 30 100.0 31 .............................. ACTTCCGCCGGTACGCGGGCGCGACGATCGC 3154 30 96.7 31 .............................A AGTTCGTCACGGAGCCGTACGCCCAGGTGCG 3093 30 100.0 31 .............................. TTCGTAACGACCTGGCGTTCGCGATTGCCCG 3032 30 96.7 31 .............................C GCTTCCGGAGCGCCTTCAGGTGGTCCTTGAC 2971 30 96.7 31 .............................C GGCTGAGGCGCTGGACACGGTGCTTGACCGG 2910 30 96.7 31 .............................T CTGCTGCTGACCCACGGACCAGTGCCTCGAT 2849 30 96.7 31 .............................A TGTGTTCGGAACGAACTGATGATGATTCGGA 2788 30 96.7 31 .............................C TCGCCGAGTGAGACCGCCGGGTTGAGCCCCT 2727 30 96.7 31 .............................C TGCGCCAACAGGTTCATGCCGCTGTTATTCC 2666 30 100.0 31 .............................. CCAAGAACAGCTAGCCGTTCTTCGGTCGGAG 2605 30 96.7 0 .............................C | ========== ====== ====== ====== ============================== =============================== ================== 20 30 97.7 31 GTCCGCCCCACGCACGTGGGGGTGCTCCGG # Left flank : AACAACGGCGCCACCGCGATCTGACCGGCCAAATCATGGGGCAGCTGGACGACCGCGTCCCCGCTGGGGTAACCAGCCTGCCGCAACGCCTGGACCGCCTGGTCGCTCTTGCACTGGAACTCCTCGGTGATCTTGCCCAGATCGTGCAGCCCCGCCCACAACGCGACCAACCGCTGCGCCTGCGCCTGCGAGACGCCCATGCCCTCGGCGATGACCTCCCGCTGCGCCGGGGACAACACCCGCTCCCACAACGCCCAGGCCGCCGCGGCGGCATCCGCGCTGTGCCAGAACACCGAGTACCGCTCCCGCAGACCACGTTCCTTAGCCCACAGCAGCATGTCCAGCCCCACCATCAACCCCACCTGACTCCTCCGGCAGTACCTGCGACGCAACTATCGATACCCTCACTCCCTGACAACCTCCACCGCTGGGACAACCGACCGGTGACACCGCACCTTGAAAACTCACTACTTGCTCTGTAAAGCCGCAGGTCGCGAAGT # Right flank : GGGACCTGGCGGCCGAACTCGCTGAAGCTCCATTTTCGGGGCGTTGTGGCTGGTAGAGGACCTTGTTGCGGAGCATGGCGAACAGGACGTCGCAGCGGCGGCGTGCCAGGCAGATGAGGGCGGCGTTGTGCTTCTTGCTCTCGGCTCTCTTCTTGTCGTAGTAGGTCCGGCTGACTGGGTCGCTCAAGGCGGCGAAGGCGGCCAGGAAGAAGGCCCGTTTGAGCTTGCGGTTGCCAGTGCGGGCGGGGTGCTCGCCGCGGATGCTGGAGCCGGAGCGGTGGGTGACCGGGGCGATTCCGGCGTAGGCGGCCAGATGCGCCGAGCTGGCGAAGCCGGAGGCGTCGCCGATCTCCAGCAGGATGCGGGCGGCGGTCCTGACCCCGATGCCGGGCAGCGAGGTCAGGGCCCGGGCAAGAGGGTGCGCATCGAGGATCCTTGAGCTTCCCCCGGTAGCCTGAGGTGGTTGTTACCTGGATCGGGTTGGTGATGCCGGGATGGTA # Questionable array : NO Score: 5.58 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.43, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCGCCCCACGCACGTGGGGGTGCTCCGG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCCTCCCCACGCACGTGGGGGTGCTCCGC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.80,-11.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [35.0-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 8412-6677 **** Predicted by CRISPRDetect 2.4 *** >NZ_MUMG01000132.1 Crossiella equi strain NRRL B-24104 NRRL_B-24104)_contig_132, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 8411 29 96.6 32 ................C............ GCCGCCTGACCACCATGGACGCCGAGTGGATC 8350 29 96.6 32 ................C............ CTCACGCAGGCCGAGCAGATCAAGTACGCGGA 8289 29 93.1 32 ................C...........T GCCCCAGGTGAGCATCCAGATCGCCGGTTTTG 8228 29 93.1 32 ................C...........C GATGACCGTCCAGTGTGGACATCCGGATTCCC 8167 29 96.6 31 ............................A CCATTCCGCGCGCGGGCAGCACCGCCGCCTA 8107 29 100.0 32 ............................. ACGCCGACTGGACCATGCCGGTCATCGGGATG 8046 29 100.0 32 ............................. ATGACCGCCGAGGTGTTCGGCGTCGGTGTCGT 7985 29 100.0 32 ............................. CCCGCCATCGACGGCCTGGTGGACGCCGGGCT 7924 29 100.0 31 ............................. GCGCCGACCACGGTGGTGGCGACGGCGGCGC 7864 29 100.0 32 ............................. CTCGACCAGACCTACCCGGATCTCATGCAGTG 7803 29 100.0 32 ............................. CGCACTGGCGCGCCAAGATCGCCCTCCACTAT 7742 29 100.0 32 ............................. GGCTTCAGGCTGCCCCAGGTGCAGCACGGGGA 7681 29 100.0 32 ............................. TTCTGCCACTCCGCCGCCGATGAGCCGACCCT 7620 29 100.0 32 ............................. GTTCTTCACGATCTCCCCATGGGCGCGGGCGA 7559 29 100.0 32 ............................. GCCCCACCCGTTCATCCGGATCGGCCCTGGCG 7498 29 100.0 32 ............................. ACTTCGTCGGCCGCCCATCGCGCTCTACTGTC 7437 29 100.0 33 ............................. CACGTCGATCACGTCGTCAGGGGTCATGCTGGT 7375 29 100.0 32 ............................. TCCTTGGCCAGCCAGTGCGTGGGCGCGTCGGG 7314 29 100.0 32 ............................. TGCGCGATCTCGCCGTCCAGGTCGTTGAGCAC 7253 29 100.0 32 ............................. GGAGATTTCGCGGCCTACCTGGTGCGCTCCGG 7192 29 96.6 32 ..........T.................. GCCTGCGTACTGGAACGGCGCGGGGCGGGCGT 7131 28 96.6 32 .....-....................... GCCGAGGAGAACGGACTCCTCACGATCGGCCG 7071 29 100.0 32 ............................. AAGGCTCGGCAGTACCGCCGAATCTGGGTTGA 7010 29 100.0 32 ............................. CCGCACCGGTACGCGGTCGCGCTGGCGCTCGG 6949 29 100.0 32 ............................. TACCTCACTGGCTGGCGCCCACAGGACTTCCC 6888 29 100.0 32 ............................. GCCATCACCACCAGACCCAACCCTGTGCTGAC 6827 29 89.7 32 ...........A.A..........C.... ACCGCGCTGGACCAGGTCCGCACCGAACTCGT 6766 29 82.8 33 ...T.....G...A....A.....C.... GCCGCCCGCAGGGCGGGGCTGCCCGTAGTCCCC 6704 28 75.9 0 ...-......GATA..G.......C.... | ========== ====== ====== ====== ============================= ================================= ================== 29 29 97.2 32 GTCCGCCCCACGCCCGTGGGGATGTTCCG # Left flank : AGCATTTACTGCACGATGCCGTCTTGCTTATTGCCGGACACGTCACGCCCTCCGCATGTTCCACGCCCGGAAGGCCAGGCCGGTTCTCAAGGCCACGCAGACACGCGGGCGATCCCCATCGCCACCAGCCGCCCCCTGCGCAGCGCACAGGAGCAACCACACCTACCGCAGCCACTCCCAAAATGGTTGCGTCGACAACGACGCATTCAAGGCGTGTTTGATTCGGGTTTCAACAAATGCGCACAACTGAGATCCTCGGGCACGACAGACTGCCCCAGGGTCTGCTCACCGTGGAGCTTTCCGCAGATCAAGCCGCCGGGACCCTGCCCAGGCGTATTCAAGCTCTGTCGACCAGGTTCCTGGAGCCAGGGAGCACGTTCCGGTACCGTGCCGACCGCTCCCGGGACGCCGGCGCCATCGACGCCTCAACAGCCCTACGAGTAGCAGTTCTTGATCTTTGAAAACTGACGATACGCTCGCATAGCAGCAGGTCGCGAAGT # Right flank : AGGACAGTGAGGCGGCATGGCTAGTCAGTCGATCTTGGTGATCACCAAGCCAAGCTGATCATCCAGAGTAAACCTCCGCTTGCCGATAACCACCGCACCTACCGCGGTCCCCCGCAAAGGCAACGGGATGAGGACAAGGTCTCCAAGCCACGGCGTCTTCTCCCAACTCACTGGACGCCGCCCGTGGCCCTCGTCCTGGTGCTCGGTCAGCAACGACGCCCGGATCGGAATAGACCGAGCCATCACCATCCGCACCACCACCGCCGACGGCCGGGACGACGCCGAGGCCTCCTCACCCGGCAAGGCCACCCAGCGGTGCCGGTCCAGCCACCGCCGCCCCGACTCGTCCACGAAACAACACACCACCCGCTGACTATCCGCCCCCAACCGGGTCGTCAGCTCCACCTCCCAGTCCTCCAAAGGCCCGGCCTCGGCCACCGGTGGCCGGGACAGCTGCTCCAACCTCCGGATCGAGCCCGCCTCCGGGACCTTCACCCACC # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCGCCCCACGCCCGTGGGGATGTTCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCCTCCCCACGCACGTGGGGGTGTTCCG with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.60,-11.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [21-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [45.0-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 2348-353 **** Predicted by CRISPRDetect 2.4 *** >NZ_MUMG01000427.1 Crossiella equi strain NRRL B-24104 NRRL_B-24104)_contig_427, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ================================================================================================== ================== 2347 30 96.7 31 .............................T CCTGGTTGGTTTCACGAGGAGGTAGGTCTCC 2286 30 100.0 31 .............................. CGGTGAGGATGACGAAGGTCATGCCGATGGC 2225 30 100.0 31 .............................. GGATGCCGAGTGCCCAGCAGGTCGTGCTGAC 2164 30 93.3 37 ............................CG CCAAGGTCTCCTCGGCCGATCCGGTGCCCACCGGGGC 2097 30 96.7 31 .............................T CGCACCACATCGTTTCACCTGCTGAGGAGTC 2036 30 96.7 31 .............................G ACCGGCTGGCCTCCAACCTCAGCCACGTGTT 1975 30 96.7 32 .............................T GGGACGGCGGCCAGGACTGGCCGTACTCGACC 1913 30 96.7 31 .............................T TGCTGTATCCGTCGCCCTGGGTGTTGAGCCC 1852 30 100.0 31 .............................. CGCGATCCGCTACCAGGTCAGCGACCCGGCC 1791 30 93.3 31 ............................CA GGTCCATGACGACCTTGCGGCCAGGCGGCGG 1730 30 93.3 32 ............................CT CCCCAAGGCCGGTGCCCAGCGGGAACGCCGTA 1668 30 93.3 31 ..........A..................T ATCTGAAGCCCTTGCAGGAACTGCGCGCCGT 1607 30 96.7 31 .............................G CCATCCTCAACCGCCGCACCTCCGCCCAGGC 1546 30 96.7 31 .............................T GGAACCGGCCGGTGTCCATCTTGCGGTCGAT 1485 30 100.0 31 .............................. GCCCGGCCAGGATCACGCAGCGGGAGCAGCC 1424 30 100.0 31 .............................. CCCGGCAGCGTGCCCGGCACCCCGCCGCGCC 1363 30 96.7 31 .............................G TGGCCGCGCCGTACCGGTGGGCGCAGTCGCG 1302 30 96.7 31 .............................G TCGACGGCCAGCCGGTAGGTGTCGGCGTGCC 1241 30 96.7 31 .............................G GCGCGTTGGACCTGCGGTCCCCCGAGGCCGT 1180 30 96.7 31 .............................G AGTACATGCGGGCCTGGTCCAAGGCACTCCG 1119 30 100.0 31 .............................. CGGACAGCTCGCGGGCCATGGAGTCCAGCCG 1058 30 100.0 31 .............................. CGTCGCTGGGCCGCCACCCCGGTCCGTCCGG 997 30 96.7 31 .............................T GGACCGGAGGTGCGTGGCCAACCCGGTGCAG 936 30 96.7 31 .............................G CGAGTGCGTCGAGGCCTCCGTGCTGGACATC 875 30 100.0 31 .............................. CGGACGACCCGACGCCGGTCGGCATCCTGGA 814 30 96.7 31 .............................T ACACGATGTCGCCCTGGCCGTGCTCGCCAAA 753 30 96.7 31 .............................T GATCGGCGGCACCCGGTGGGAGGACATCGGC 692 30 96.7 32 .............................A CCTTCGGCCCCATCGCGCAGAGCCGGAGTGAC 630 29 90.0 31 ....A................-.......G TGAAGGGCCAGCTGGAGATCCTCGGGATCGT 570 29 90.0 31 ....A...-.T................... AGAAGCGCAGCCTGGTCCCAGTCCCCAACCG 510 30 66.7 98 ..T.AT.T..G.....C...AAC......A CCGCACTCATGCGCGCCGTGTGCGCGACGTTGTTCGCCTTGTCACATGGGGTGCTCCGGCTGTCGGCTGCCTCGCGTCCCAGCTGCCCAGCTCATCGA 382 30 76.7 0 ..G.....T...AT......CT..T..... | ========== ====== ====== ====== ============================== ================================================================================================== ================== 32 30 95.1 33 GTCCGCCCCACGCACGTGGGGGTGCTCCGC # Left flank : AACAACGGCGCCACCGCGATCTGACCGGCCAGATCATGGGGCAGCTGGACGACCGCGTCCCCGTTGGGGTAACCGGCCTGCCGCAACGCCTGGAACACCTGGTCGCTCTTGCGCTGGAACTCCTCGGTGATCTTGCCCAGATCGTGCAGCCCGGCCCACAACACGACCAACCGCTGCGCCTGCTCCTGCGAGACGCCCATGCCCTCGGCGATGACCTCTCGCTGTGCCGGGGAGAGCACTCGCTCCCACAACGCCCAAGCCGCCGCGGCGGCATCCGCGCTGTGCCAGAACACCGGGTACCGCTCCCGCAGACCGCGTTCCTTGGCCCAGAGCAGCATGTCCAGCCCCACCATCAACCCCACCTGACTCCTCCGGCAGTACCTGTGACGCAACTATCGGTACCCTCACCCCCTGACAACCACCACCACTGGGACAACCGACCGGTGACACCGCACCTTGAAAACTCACAACTCGCTCTGCAAAGCCGCAGGTCGCGAAGT # Right flank : CTGCGGCGACCGGGGGTGTCCCTATTTCTTCTGTCAAGCTGCGACAGGGATCGCCGAAGCTTCAGTTTCGGGGCGTTGTGGCTGGTAGAAGGCCTTGTTGCGGAGCATAGCGAACAGGACGTCGCAGCGGCGGCGTGTCAGGCAGATGAGGGCGGCGTTGTGCTTCTTGCTCTCGGCTCTCTTCTTGTCGTAGTAGGTCCGGCTGACTGGGTCGCTCAAGGCGGCGAAGGCGGCCAGGAAGAAGGCCCGTTTGAGCTTGCGGTTGCCAGTGCGGGCGGGGTGCTCGCCGTGGATGCTGGAGCCGAGCGGTGGGTGACCGGGGCGATTCCGGTGTAGGCGGCCAGATGCGCCGA # Questionable array : NO Score: 5.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.75, 5:0, 6:0.25, 7:-0.16, 8:1, 9:0.33, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCGCCCCACGCACGTGGGGGTGCTCCGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCCTCCCCACGCACGTGGGGGTGCTCCGC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.80,-11.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [21-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [36.7-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 455-926 **** Predicted by CRISPRDetect 2.4 *** >NZ_MUMG01000467.1 Crossiella equi strain NRRL B-24104 NRRL_B-24104)_contig_467, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ====================================== ================== 455 36 88.9 38 G..G............C.........C......... ACGGCCAGCACCGGCCAGGCGTGCAGGACCCGCAGCCC 529 36 94.4 36 G..G................................ CAGCGTGATCAACTTCGGACACATCAACGTCTCGTA 601 36 97.2 37 ...G................................ GGCCGACGTCGGCCTCGGAATAGCCGATCGGCGAATC 674 36 100.0 38 .................................... GCGCCGAGTTTGGGCAGGCTGTACGCCCCGGGCGGGTA 748 36 97.2 36 ..............................T..... GATCAGCGCGTTCACCGGCAAGGCGTCCGAAGACCT 820 36 100.0 35 .................................... GTCAACCGCAACCTCGGCGAGGGCATGGTCTGGCT 891 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ====================================== ================== 7 36 96.8 37 CCCACAACGAGGGGCGACGCGAGGCGTCGCCGAGAG # Left flank : GAGGCGTCGCCGAGAGAGCTCACTCTATACATGAGCCGCGACCTGCTGTTGTGTAGATCATCGCGAGCGGTGACTGATCGGAGTCAGCTTGCCATGTTGACGCAGTACATCATCGCGACCTGGAAGTGCTCTGACCTGGGCGCGAGCGCTGCCGCCTGATGGTGGCATCACCTCCCCGCTCGCAGTCCCTCGATCTTCGGCCCACCGATGAGCCTAGAGAGCCTGAAGTGCGCGGCTGTTGCTCTGTGGAGTTGATCGAGTTCGGGTGTGTCATCAGCGTCGTGAGGCTACCGACCGGCACCGACACCACTTTTTCCTGCCTTGACGACCTGCGCGGCGCTTGGCGCCGCTTAGAGGCCCGACCTGCGGTGTCGAGCCGGGCCGGGACTGCCGCACGCCGCAATGAGGAGCGGTGCTTGGCGCTGCGGGCACCGTGGCTCATCGGCGCAGACTGG # Right flank : AGCTC # Questionable array : NO Score: 2.95 # Score Detail : 1:0, 2:0, 3:0, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.85, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCCACAACGAGGGGCGACGCGAGGCGTCGCCGAGAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,1] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-15.10,-14.90] Score: 0/0.37 # Array degeneracy analysis prediction: R [6-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [30.0-3.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0.41 Confidence: LOW] # Array family : NA // Array 1 5452-6459 **** Predicted by CRISPRDetect 2.4 *** >NZ_MUMG01000559.1 Crossiella equi strain NRRL B-24104 NRRL_B-24104)_contig_559, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ================================ ================== 5452 30 96.7 31 .............................G AGGGACAGGACGAGCCGGCGCACGGCACGCT 5513 30 96.7 31 .............................G GAATGGACGAGCAGTCCGCGCAGGCCGTGCG 5574 30 96.7 31 .............................T AATGGTCCCGACCGGCGAGCCGGTAGGAAAA 5635 30 100.0 31 .............................. ATGCCCGCCCTGCACCGGCCCCGCTATCCGG 5696 30 100.0 31 .............................. CGGAGGCCAGTTCGGCCGCCACGGCGGCGCG 5757 30 96.7 31 .............................G CCTGGACGCCGACGACATCGCCGACCACCTC 5818 30 100.0 31 .............................. CGCAGTCGGCGATGGAGACCGTCAACGACCT 5879 30 100.0 31 .............................. CACCGGAGCGGCCGCTGCTGCCCTCGTACGC 5940 30 100.0 31 .............................. CACGATCACAGGCGCCCCAGACGACGCGAAG 6001 30 96.7 31 .............................T CCAGCGCGGTCGGCGAACGCTCGGTCCGGGA 6062 30 96.7 31 .............................T CGCTGTCGATCACCTCGTCCAGGACGTCGTC 6123 30 96.7 31 .............................A AGCTCACCGACTCCGGCAACCTGGTGCGTGA 6184 30 96.7 31 .............................A CGTCATCGCGGCCTCGACCCGGGCGTGGTGC 6245 30 100.0 32 .............................. GCATTACCGGTGTATTCACGGGTAAGCCCTAC 6307 30 100.0 32 .............................. GCATTACCGGTGTATTCACGGGTAAGCCCTAC 6369 30 96.7 31 .............................A CCTAGGTCGTCCACCCGGTCCACCTGGGTCC 6430 30 96.7 0 .............................G | ========== ====== ====== ====== ============================== ================================ ================== 17 30 98.1 31 GTGCGCCCCACGCACGTGGGGATGGTCCGC # Left flank : GCATCGTCGCCGACATCCAGGCCCTGCTGGCCCCGGAGGAGGCGCAGGTGCCGGAGCAGGAGATGGCCGAGCTGGTGTCGCTGTGGGATCCGGAGCTGGGCGTGCTCCCGGCGGGCATTAACTACGCCGAGCAGACCAGCGGGTGAGGAAGGAGGAGAGCTGTGCCGTCGATGGTCGTGCTGGCCACCACCGCGGTCCCGGACCACGTGCACGGGGCGCTGAGCCGCTGGTTGCTGGAGGCCATGCCCGGGATGTTCGTCGGCAGCGTCTCGGCCAGGGTGCGGGATTTGTTGTGGGACAACGTTTCCGCTGTGGTGGGGGAGGGTGCGGCGGTTCTGGTGCATCCGGCCGACAACGAGCAGGGCTTCGCCCTCCGCACCGCCGGGGACCGGCGGCGGCAACCATACGAGCTGGACGGGCTCACGCTGATTCGTTGGCGAGCCCCTGTCCAGGAGGCTGAAGAAGTGCCGGTGCCGTGGTAAATGTGCAGGTCGCGAAGT # Right flank : GCGGGACACCTGGATAGCAGAGCTGAGGGATCCAGCGGGGTGTGCGGGAGTCTGGGGATCTCCTGTCCCTGCGTCGTGGTAGACGTCTACGGTGTTAGGACCACACGGACGTGGTGCTTGGTGATGACCAAGCCAGCGGGCTCGCTGTCCTCAGCAGTTCCAGCGGGGTAAGCGGCGATGACAGGTTGTGCGGAGCGGTCACGACCGAAGAGTCGGATCTGCTCGACCAGCCTCTCAGCGAGCTCAGCGGCGGCCGGGCCTCGGCCGACGGCGCCGAGTTCGTAACGGGATTCTCCGTCCGGGCAGGGCACGTCGGTGAGCCGCGGCTTGGCGAGGTAGGCCAGGGAGTCGCCCTCGACCATGGCCGGGACGCGGTAAGGGTTGGCGGGGCGCCAGGCGGTCATGGCCTCGGGCTCAACGGCGAGTCGGCAGGTGCCCGGCTCGGTGGCGGTCAGCCACAGCCAGATGTGGTCGAAGGGCTCGTTCGCGCCTACCGTCAC # Questionable array : NO Score: 5.80 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.64, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCGCCCCACGCACGTGGGGATGGTCCGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGCACGCGGGGATGGTCCCG with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.20,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [38.3-33.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 401-2 **** Predicted by CRISPRDetect 2.4 *** >NZ_MUMG01000171.1 Crossiella equi strain NRRL B-24104 NRRL_B-24104)_contig_171, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ======================================== ================== 400 35 85.7 37 T.....G............A...T.C......... ATGGTAGTGCCCGCGCACAAGATGCGGGGCACCCCGA 328 35 94.3 40 .T....G............................ GGGCCGGTCGCCGTCTACGACAGGATCGGGGGTGTGGGGT 253 35 100.0 38 ................................... GCGACCAGTGGGTCGACGGCCTGCGGCACACCCGGCTC 180 35 100.0 36 ................................... CCTGACCGACCTGGTCCGGCAGACCTGGCCGTCCAC 109 35 97.1 38 ..................A................ ACCGAGCTGCGAGTACAGCCCAGGCCCGTTGTCCTGTC 36 35 97.1 0 ..................A................ | ========== ====== ====== ====== =================================== ======================================== ================== 6 35 95.7 38 CCGCAACGAGGGGCGACGCGAGGCGTCGCCGAGAG # Left flank : CGCATCGAGACCACGTTCGGTGAGCAGCGCCCAGATCTGCCGCTTGTCCCCTCGCCCCTCCTCGGGCGTGCGGTGTGCCCAACCCCGTTCGCACAGCCGCTCCATGGTGCGGCTCAACTGAGGCCGCGAGGTCCTCGCCGCCTCGGCCACCGACGTCATCGTCATCGGCTGCCGGTGCACCGCCAAAGCCAGCAACGCCCTGAACTCCCCCAGGCCCATCCCCCGCGACCGCACCGCGCGGTCGAGCTCACGCTCTACCTCGCGCGCGGCCTCCAGAAGGTTCTCAACTGGCAGAACCCGGTCATGGATCGTCGTCAAGGTCATCGTCGACATCAAGTCCCCCCTCATCCCGCGGCCCCCACCGCAGGTACATGCCTGTACACCTACACCGATCTGTGATCGGACTATTCTGACACCGTCGGCACTCTCGTAGTGCTGAAATGCCCGATCGACGTGGCCGCGCCAGCTCGAACCGATGAGTGCCCACGACCTGACGGAGG # Right flank : GA # Questionable array : NO Score: 2.74 # Score Detail : 1:0, 2:0, 3:0, 4:0.79, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCGCAACGAGGGGCGACGCGAGGCGTCGCCGAGAG # Alternate repeat : CCGCAACGAGGGGCGACGAGAGGCGTCGCCGAGAG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-14.90,-15.10] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [1.7-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,0.64 Confidence: LOW] # Array family : NA //