Array 1 2665140-2666570 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP018219.1 Salmonella enterica subsp. enterica strain LSP 389/97 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 2665140 29 100.0 32 ............................. TTTGCCGATCCCCTTCCAGACCACCCTTTACA 2665201 29 100.0 32 ............................. TGCAGAGTTGTATCTTACCCTGTTTACGTTTC 2665262 29 100.0 32 ............................. TTATCCCAATATATTTCGCTATCAGTTACATC 2665323 29 100.0 32 ............................. GACTGTTTATACCGGATTCCATGCGTTTTCAG 2665384 29 100.0 32 ............................. GATCGGGTGGTGCCGGTGGGCCATGTGGCGCT 2665445 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 2665506 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 2665567 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 2665628 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 2665689 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 2665750 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 2665811 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 2665872 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 2665933 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 2665994 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 2666055 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 2666116 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 2666177 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 2666238 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 2666299 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 2666360 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 2666421 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 2666482 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 2666543 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 24 29 98.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 2682703-2683220 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP018219.1 Salmonella enterica subsp. enterica strain LSP 389/97 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 2682703 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 2682764 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 2682825 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 2682886 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 2682947 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 2683008 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 2683069 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 2683130 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 2683191 29 96.6 0 .....T....................... | A [2683218] ========== ====== ====== ====== ============================= ================================ ================== 9 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //