Array 1 3230777-3235256 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP043041.1 Leptospira interrogans serovar Hardjo strain L53 chromosome 1, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ========================================================================================================================================================================================================================================= ================== 3230777 32 96.9 39 ....................T........... CACCCAGCGGGATTCTTGGAAATAAATTACTCAACAAAC 3230848 32 96.9 40 ....................T........... CACTTAAATCGGAAGCATGTTGCGACTCGATTTCGAAATC 3230920 32 96.9 41 ....................T........... CACCAAATATTCATGGCGCCTTGTCTCCCTGGGCTTCACAC 3230993 32 96.9 40 ....................T........... CACTTTTGGACAACAACTTCCTCGCTCCCCGCATGTTCTC 3231065 32 96.9 41 ....................T........... CACTAACAACATAGTCTTTAGAGATAGAGGCCATGACAAGC 3231138 32 96.9 41 ....................T........... CACACATACTAATTTTTGATCCAACTGTTGTTGTGTTAATC 3231211 32 96.9 40 ....................T........... CACACAAAAAAAGACAAGTTGGTCCGGAATGCGTTTGGCC 3231283 32 96.9 40 ....................T........... CACCTAGAGTGGCGTGAATTTTTGCATGAGTTGACCCTTC 3231355 32 96.9 40 ....................T........... CACTATCGTTATCCGCCAAGGCGTTATCAGTTCTACAATC 3231427 32 100.0 39 ................................ CACTTAACAACCATATCTGTAGTCTTATATGCAATTTTC 3231498 32 100.0 40 ................................ CACATCGGAATATTTGCCCCTTTTGTATCATAGTCGTAAC 3231570 32 93.8 231 ....................T........T.. ACGAAGAGAAGATTTGTTTTAGCCCAAATTGTTTCGCACCAAACGTGCAAACAGATAAAATGTAGGAACTACTACTTTTCCGAAAAACTGTGCTTTGTTCAAATAAATGTGGGAACTCCCACTTTGAAAAAAGAAGGTTTCTGCGTCTCTTAAGTCAAACTTACAAAAATCGGGTGCCGGTAGGCGTTGAGCACTTGGTTCTTTTGTATATTTAAAACGACTTACAGTTTC A [3231597] 3231834 32 93.8 40 ...................AT........... CACATTTCTGCATCCTCTTTTTCGTTCAGTTTCCACAGCC 3231906 32 93.8 232 ....................T........T.. AATGAAGAAAAGATCTGTTTTGGCCCAAATTGTTTCGCACCAAACGTGCAAACAGATAAAATGTAGGAACTACTGCTTTTCCGAAAAACAGTAGTTTATTCAAATAAACGTGGGAACTCCCACTTTGAAAAAAGAAGGTTTCTGCGTTTCTTAAGTCAAACTTACAAAAATCGGGATGCCGTTAGGCGTTGAGCACCAACGTTTCGCGGGACCTTGATTCCTTCGGAGCGAC G [3231932] 3232171 32 96.9 229 .............................T.. ATGAGGAGAAGATTTGTTTTAGCCCAAATTGTTTCGCACCAAACGTGCAAACAGATAAAATGTAGGAACTACTGCTTTTCCGAAAAACAGTATTTTATTCAAAGAAATGTGGGAACTCCCACTTTAAAAAAAAGGTTTCTGCGTCTCTTAAGTCAAACTTACAAAAATCGGGATGCCGTTAGGCGTTGAGCACAGCGTTTCTAATTTTTCGTCTACAGTCACTTTACGC A [3232198] 3232433 32 93.8 231 ....................T........T.. AATGAAGAGAAGATTTGTTTTAGCCCAAATTGTTTCGCACAAACGTGCAAACGGATAAAATGTAGGAACTACTGCTTTTCCGAAAAACAGTATTTTGTTCAAAGAAATGTGGGAACTCCCACTTTGAAAAAAAAAGGTTTCTACGTCTCTTAAGTCAAACTTACAAAAATCGGGATGCCGTTAGGCGTTGAGCACCTTCAAAACACGATGCTCCCCGGAGTCGCTGGAACT G [3232459] 3232697 32 93.8 232 ....................T........T.. AATGAAGAGAAGATCTTGTTTTAGCCCAAATTGTTTGCTAAAGTGTGTAAACGGATAAAATGTAGGAACTACTACTTTTTCGAAAAACAGTACTTTGTTCAAATAAATGTGGGAACTCTCACTTTGAAAAAAGAAGGTTTCTGCGTCTCTTAAGTCAAACTTACAAAAATCGGGATGCCGTTAGGCGTTGAGCACTGCGAAATAGAAGAACTTTTGATGTTTGATATAAAGC A [3232724] 3232962 32 96.9 40 ....................A........... CACACGGACCAACCAGGTATAAAACTCCAACAGATTACCC 3233034 32 100.0 40 ................................ CACACGGACCAACCAGGTATAAAACTCCAACAGATTACCC 3233106 32 100.0 39 ................................ CACCCACGAAACAGATACAAAGCCTTCTATTTTTCCCTC 3233177 32 96.9 232 .............................T.. ATGAGGAGAAGATTTGTTTTGATCGCAATTGCTCCGTACAAAGGGCACAAACGGATAAAATGTAGGAACTCCTGCTTTTCCGAAAAACAGTACTTTGTTCAAAGAAATGTGGGAACTCCCACTTTGAAAAAGAGAGGGTTTCTGCGTCTCTTAAGTCAAACTTACAAAAATCGGGATGCCGTTAGGCGTTGAGCACTGTCAGTGACGGCGAATTTCATGAGCCTGCATTTTC G [3233203] 3233442 32 90.6 189 .................T..T........T.. AATGAAGAGAAGATCTGTTTTGGCCCAAATTATTTCGCATAAACGTGCTTTGTTCAAATAAATGTGGGAACTCCCACTTTGAAAAAAGAAGGTTTCTGCGTCTCTTAAGTCAAACTTACAAAAATCAGGATGCCGTTAGGCGTTGAGCACAGCGTACTAGGTCGTGAATCACTTACTGGGGCTGAAAAC G [3233468] 3233664 32 93.8 231 ....................T........T.. ACGAGGAGAAGATTTGTTTTAGCCCAAATTGTTTCGCACCAAACGTGCAAACAGATAAAATGTAGGAACTACTACTTTTCCGAAAAACAGTAGTTTGTTCAAATAAATGTGGGAACTCTCACTTTGAAAAAAGAAGGTTTCTGCGTCTCTTAAGTCAAACTTACAAAAATCAGGATGCCGTTAGGCGTTGAGCACCTTCAAAACACGATGCTCCCCGGAGTCGCTGGAACC A [3233691] 3233928 32 93.8 230 ....................T........T.. ACGAAGAGAAGATTTGTTTTAGCCCAAATTGTTTCGCACCAAACGTGCAAACAGATAAAATGTAGGAACTACTACTTTTCCGAAAAACTGTGCTTTGTTCAAATAAATGTGGGAACTCCCACTTTGAAAAAAAAAGGTTTCTACGTCTCTTAAGTCAAACTTACAAAAATCGGGATGCCGTTAGGCGTTGAGCACGAATAACTCGTTCGGAAAGCGTTCTGCGGATCTTC A [3233955] 3234191 32 100.0 39 ................................ CACTTGATCGAAAGTCTTCGAATATTAAAATCCGATCCC 3234262 32 96.9 40 ....................T........... CACGACAGAATATTAAAAACGAAAGAACAAGAAATCTTGC 3234334 32 96.9 39 ....................T........... CACTTGATCACGACCGGGACTTTGATTGCTGTAGCTATC 3234405 32 93.8 233 ....................T........T.. AATGAAGAGAAGATTTGTTTTAGCCCAAATTGTTTCGCACCAAACGTGCAAACAGATAAAATGTAGGAACTACTACTTTTCCGAAAAACTGTGCTTTGTTCAAATAAATGTGGGAACTCCCACTTTGAAAAAAGAAGGTTTCTGCGTCTCTTAAGTCAAACTTACAAAAATCGGGATGCCGTTAGGCGTTGAGCACTTATACGACGAGAGCGAGGTGGCGGCTCTGTTACGCC G [3234431] 3234671 32 96.9 41 ....................T........... CACGCAAATTGAGTTTTAGGATTTCTGCTACAATATCTTTC 3234744 32 96.9 40 ....................T........... CACCATTTTTGCTCTTCCTTAATATTCATTTTGTTTACTC 3234816 32 96.9 39 ....................T........... CACACTTAAGACCAAATCGTAACGTCTGGTTTGAGACTC 3234887 32 93.8 231 ....................T........T.. ACAAAGAGAAGATTTGTTTTGGCCCAAATTGTTTCGCACCAAACGTGCAAACGGATAAAATGTAGGAACTACTACTTTTCCGAAAAACAGTATTTTGTTCAAAGAAATGTGGGAACTCCCACTTTGAAAAAAGAAGGTTTCTGCGTCTCTTAAGTCAAACTTACAAAAATCAGGATGCCGTTAGGCGTTGAGCACAGTTAATCAAAAAGATTCTGAGTATTTTAGAAGAGC A [3234914] 3235151 32 100.0 41 ................................ CACGGTTCGAAGGCGCTAAGGCTTGGATGAAAGCGCTCGGC 3235224 32 96.9 0 .............................T.. | A [3235251] ========== ====== ====== ====== ================================ ========================================================================================================================================================================================================================================= ================== 34 32 96.4 102 TGAATATAACTTTGATGCCGGTAGGCGTTGAG # Left flank : ATTGGCAAAAGTCACCGAAGAAGAAGACAATATATTTTATCTGACTCTTTGCACCAAGTGTGCTTCGGGCGCCCATACCCAAGAAAAAAAATCCGCGTGGCCAGAAGCTCCAAAAACATTAAAAATTCTATAATTCAAGTATCTCTTCAGGGCATAGACATAATTCTACTTAAAAAGCAAAACTAAATCTTTGAATCTATATTTAATTCCAAGACATATCCAATCTTTACTCGGATTCAGAAATAGACCCTATCTAATTGATTGCCCAACGCTCGTTTTTCTTTCTTGTGAAAATTCCAGCTAAATTTATAATCGGTGACGAGCTTAAACATACTTGAATCTTAATATTTGAAACAAAATGATCCTTGGAAACAAAATATGCACTTCTGAAAAAACCGAACATGAAAAATAACGATAAAAAACGATATACTTGTTCTCCTCCTTTGAAAACACTCATATCCACAATTTATGCTTATAAAAGCCATTTAAATAAAATGCTC # Right flank : GGATGAAGAGAAGATATGTTTTGATCGCAATTGCTCCGTACAAAGGGCACAAACGGATAAAATGTAGGAACTACTACTTTTGGAGAGGTTCAATAGAACCAAATCGCAGAGAATAAAATTAATTACAGTGGCAAACATAAATTTTCCATTGACAAAATAAATACCTATTTTCAAATGGATTGTCATGAGAATTGCCCTTGACGCATACGCCTATATTGCTTTTACAAAGGGCAATCCAAGAATGACGAAGTGGATCCAAGAGGCCGAACACATCTACATCCCCTTTGTCGTTTTAGGAGAATTGCGTGCAGGTTTTTTAAGCGGAAATCGAACAAATAAAAAAGAGCGCTCCTTAAAGAAATTTTTAAATGATCCACGAGTAATTATTTTATATCCGGATAAACAAACGATACACTATTATTCACAAATTCGAAAAGACTTAAAAAAGCATGGAACTCTGATTTCTGAAAATGATGAATGGATTGCAGCATCGGCAATTT # Questionable array : NO Score: 2.58 # Score Detail : 1:0, 2:0, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TGAATATAACTTTGATGCCGGTAGGCGTTGAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.25%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-4.90,-4.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA //