Array 1 11362-11786 **** Predicted by CRISPRDetect 2.4 *** >NZ_CABHNX010000219.1 [Clostridium] symbiosum isolate Clostridium_symbiosum_TS_8243C_mod2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ================================== ================== 11362 32 100.0 34 ................................ TTTATCAATCCTGGTTCGCTGCCATTCAGCTATT 11428 32 100.0 34 ................................ CAAATTTTAGTCCCGTTGTGACCAACTTCGTTAC 11494 32 100.0 34 ................................ GGCCCGGTACGGTATCTTAGCCACTGAGTTAAGT 11560 32 100.0 33 ................................ ATTCTGTGTCTTTTTCAGACACTTTTTGGCTAA 11625 32 100.0 33 ................................ ATCTGACCTGTTGCAATTCCAATGTTAAAATTC 11690 32 100.0 33 ................................ GCTGTACTGTCTTTCCCTCCAGACCAACTGCAG 11755 32 87.5 0 ..........................T..GGT | ========== ====== ====== ====== ================================ ================================== ================== 7 32 98.2 34 GGTCAGGCTCGTAAGAGCCTGTGGATCGAAAC # Left flank : GAAATGAGGTGATGGATTTGCTCGTTCTTATAACCTATGATATTAACATTACAGAAGCCGCAGGGGCCCGCCGTTTAAGGCGCGTAGCCAAGCAATGCGTAAATTATGGCACACGGGTACAGAACTCTGTTTTTGAATGTCAGGTGGATGCAACGCAATATGTGAAGCTAAAACATCTTCTGATGAAAGAAATTGACGAAGAAAAAGACAGTCTGCGTTTTTACTCTCTAGGTAATCATTATAGCGGTAAGGTTGAGCATTTTGGCGTGCGGCGCGGAATACAGGTGGATGAACCTTTAATTTTATAAAAGAACCGCAGGGAAGATGTCTTGCCTTATCAGTGCGAACCCGAAGTGAACATGAATTCTGTGGGAGGTTCGCACCTGGATTTTGGTGTAAATTGGAGGGGATTCTGGTTTAGAGATAAAATTAAATATCATATTTGGATGATTTGAATAAAAAGTAATGTAAAAAACACTCTAAAACCATGAATTTTTGCT # Right flank : TTTTATTGGCGCAAAGAGATGTGGATTCCGGGGATAAGAGATCGGCGGATGAAATCTGTCAGCAGGAACTGAAGAATGCTGTCTGCATCACACTTAAGGAAAAGGGGGCTCAGGAAAAGGGGAGTCTTATGAAAAATGTGATCCGGACGATGGGGTATGCCCGAAGCAGTACTTCCTTAGTGGAGGCTGCTGAAAAGGGGATGAAGTATGGAAGGAAGACAGGGGAGATTGTGCAGGATGAAGAGAAGCGGTTTAGGCTGGGAAATTGACAATCTTGCTAAACTGAAAAGTGCAGTTCGCTAAGGAAGAATGATACCCGGTGTCAGAAAATAGTTTGGAGAAACTGAGTAACAACAACAGCAAAAACAATCATTCATAGCGATTAAATCACCAGAAGAATTTACCTGCACATTAGGAAATGATTAATAAATTCTTTAGCATTCAATAATACAATAATTCAAAAGATTTATTATAATGTTAGAGGAGATAAAAATCATGGA # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGTCAGGCTCGTAAGAGCCTGTGGATCGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GGTCAGGCTCGTAAGAGCCTGTGGATCGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.90,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [76.7-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 69596-70973 **** Predicted by CRISPRDetect 2.4 *** >NZ_CABHNX010000224.1 [Clostridium] symbiosum isolate Clostridium_symbiosum_TS_8243C_mod2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ==================================== ================== 69596 33 100.0 33 ................................. CTGCCAATTTACGGAAGTGTTTGCTTTAATAGC 69662 33 100.0 34 ................................. ATTTTTGCATCAAGTGTTAAATTAAGTAATCCAC 69729 33 100.0 33 ................................. ATCACACATTGACCATTCAAAAAGATTCTTACA 69795 33 100.0 34 ................................. CTGATGCAGTTTTGTTAAATCCTTGTTCCAGAAC 69862 33 100.0 34 ................................. CCACGACAGGAAAGCCTGCCGTAAGCTATCGTTC 69929 33 100.0 34 ................................. CTTTCTTTTTAAATAAAACCATATTGGCAATTTC 69996 33 100.0 34 ................................. ACAAACATTGCTTCATCCCATTGTGACTCATGCT 70063 33 100.0 35 ................................. TCCCCCGTTCGAAGGTGGGTTAGGCGGTGGCACAT 70131 33 100.0 35 ................................. CGGAATTATTTCTATTCTGTTGAGTTTGGAAAGAC 70199 33 100.0 34 ................................. TGCCAGAAAAACAAAATTTCCTCCTGATTCCAAC 70266 33 100.0 36 ................................. GATGATGGACAGTAATTCATTCAGGAGATACCAAAC 70335 33 100.0 35 ................................. TCCTGGAGCTGGAGCTGGTCGAGATGCTTCAAGGA 70403 33 100.0 34 ................................. ATCCAGCTTGAAGACATCCTTAATTTTCTGCCAT 70470 33 100.0 34 ................................. TTTTAGTACGATATCGCTTTACGTGCGTCTCATA 70537 33 100.0 34 ................................. CGTACACCCAGACGGTAAGTGTGCCAGGAGCTAC 70604 33 100.0 34 ................................. TACCTTGTAGCTGGCGCAGACGCTTCTCCAGCCG 70671 33 100.0 35 ................................. AACCGCTTTTTTATAAGCAGAAGAGGGGGCTTGCC 70739 33 100.0 34 ................................. GTGTATATTCTTCATAGCCTTTTAGCATATCATC 70806 33 100.0 35 ................................. CCGGCTGATATTCGATATCCAGAGGCAGCAGGATA 70874 33 100.0 34 ................................. TGGTTTTTATTTGAACAGCACCAGCATGAAACGC 70941 33 100.0 0 ................................. | ========== ====== ====== ====== ================================= ==================================== ================== 21 33 100.0 34 GTCGAGGCTCGTGAGAGCCTTGTGGATTGAAAT # Left flank : CAAGAAACTTGAGGCTTATTTTAAAAGTAAAATGAAAGCGTAATAAGAGAAGCTGATATTTGGAGATTGGATTTTATCTTAAGCGGCTTTAAATTAGTGTGAAGCGCGGAATTATAATCTGTTATATACTTTGTTCATATAAAAAATATAAACATTTATGTAAATACATTTGAATTCTTCGAGCGTGACAAAACATAATAAACTGCTGGGTACACTGTTAACTGCGACCGCCATTTTAAATGATTGTTTAGGATTGTACGGGAAAATTTAGCACATATGGATAATGGAGGTAATTTACAAAGAGGGTTGATTTTTAGTAAGGAAACTCTGGTGCGAATAATAGTTGCACATAAAATTCCAGGGGGATTCGCACTGCAAACGGCCGGAAAATAGGATTAAAATACGAGAAAATTTTTTGACTTGCTGGATGATTTGTTGAAGGTGTATAATTAAGATATATAAATTTGGCATGGATGCAAGGATAATTGTGTATTTTTGCT # Right flank : TTCAACGACTGGAAGTTGGAAGCACTTATGTCGACTATACATCTTTACTACTCACCTCGAAATACTCTATAATTCCCAGTGTTACAAAGAAAATATATTTAAAAGGGAAGGGGAAAGCTGCTATGGCAAAAGATATTAATATTCAGGATTTAATAAACAAGATTAATAAATTTAGAGAGGAAAGAGATTGGAGAAAGTTTCACAATCCTAAGGATTTATCAATCTCCATTTCACTTGAAGCATCAGAATTGCTGGAATTGTTCCAATGGAAATCAAGTGAGGAAGCGGTAGAAAATAATCTGGATAGAATGAAGGATGAAATTGCTGATATCTTTATATATCTGCTTATGCTTTCGGATGATTTGGGGTTAGATCTTTTCAGTGCAGTTACTGAAAAAATGAATAAAAACAACGGAAAATATCCAAAAGAGTTATGCAAGGGGAAGCGTGATAAGTATACAGCCTATTTAGAGTGAAAATTAAACATAAAATTTCATTAT # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGAGGCTCGTGAGAGCCTTGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [7,9] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGAGGCTCGTGAGAGCCTTGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.90,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [71.7-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.64,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 71721-73492 **** Predicted by CRISPRDetect 2.4 *** >NZ_CABHNX010000224.1 [Clostridium] symbiosum isolate Clostridium_symbiosum_TS_8243C_mod2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ====================================== ================== 71721 31 100.0 37 ............................... ATAACGATTCCTGGCTGATTGCAGCATAGCACTGCAA 71789 31 100.0 36 ............................... ATACGGTGGAATTTTATTCAGAACCATATCCCTGCC 71856 31 100.0 37 ............................... ATAATGCTGTACCCAAAATACCACGTCTGCATTTCAT 71924 31 100.0 36 ............................... ATGAAATATCGAGAACGTTTCTTCACATCAGCTGAA 71991 31 100.0 36 ............................... ATCATAACCGCAGGATGTTTCATCTAAAAATAATTC 72058 31 100.0 35 ............................... ATTCCGCTTCACCTCCCTCTTCAACTTCACCTACA 72124 31 100.0 35 ............................... ATCTTATACTTCGTTTGGTAAATCGTATCTACCCA 72190 31 100.0 36 ............................... ATCTTATACTTCGTTTGGCAAATCATATCTTCCCAC 72257 31 100.0 36 ............................... ATAGAATATCACCGCTGTGGGAATTCCGGCCCGGCC 72324 31 100.0 35 ............................... ATAAATGTTTACTATGAAGGTGATGCTTCACTAGG 72390 31 100.0 36 ............................... ATTTATCATTGATGTAGAATATCTAAATAATGAAAC 72457 31 100.0 38 ............................... ATTTATATCTGCATTTAAAGATAAGTGTGTACAATAAA 72526 31 100.0 35 ............................... ATAGGCTTCCAGCAACAGAACTTAGATGAATCAAG 72592 31 100.0 37 ............................... ATTTCTGTATCCGCCTGCTGCCCGAACTGCTCCTCGA 72660 31 100.0 37 ............................... ATAGTTTCCGGTGAATATTTTCCATCCTGTCCACGTA 72728 31 100.0 35 ............................... ATTGACACTTGATTTTGTTTTTGCCATAACTTTTC 72794 31 96.8 35 A.............................. ATTTCTTAGGTCCTGCAGCTTAACGCTTTCCAGCG 72860 31 100.0 37 ............................... ATACCATCCCGCGTCTTCTGTACCGGTCCTAATCCGC 72928 31 100.0 35 ............................... ATCCCCATCCAGCCCAGGTGGAACCGTATTTATGA 72994 31 100.0 36 ............................... ATTCTGACTTTCTTGTCTTCAGTCCTGTTTTTAGTC 73061 31 100.0 36 ............................... ATATTACTGTTTGGGTTAAGTTCTCCGCCTCTTCTC 73128 31 100.0 37 ............................... ATTTCACATACTCCACAGCCGCTTTTTGGAGGATGGC 73196 31 100.0 35 ............................... ATGGAACATGTTCCATACATTCTTCCCATATTGCT 73262 31 100.0 36 ............................... ATCCTGCTGTCCCTGCACCTCAATCATTGTCTGCAT 73329 31 100.0 36 ............................... ATTCCCCAATCACAGGCACAATCTTCACCGTCTGTT 73396 31 93.5 35 ...A.......................T... ATGTCGTCGGCCGTTCCCGGAAGGCCGTCAGCTCT 73462 31 90.3 0 ..........T................TT.. | ========== ====== ====== ====== =============================== ====================================== ================== 27 31 99.3 36 GTCGAGGCTCGCGAGAGCCTTGTGGATCGAA # Left flank : TTGCTGGAATTGTTCCAATGGAAATCAAGTGAGGAAGCGGTAGAAAATAATCTGGATAGAATGAAGGATGAAATTGCTGATATCTTTATATATCTGCTTATGCTTTCGGATGATTTGGGGTTAGATCTTTTCAGTGCAGTTACTGAAAAAATGAATAAAAACAACGGAAAATATCCAAAAGAGTTATGCAAGGGGAAGCGTGATAAGTATACAGCCTATTTAGAGTGAAAATTAAACATAAAATTTCATTATTACATTGCTTGTTTGAAAACTGTAGGGTTAACTATGGGTTGATTTGATGGGTATTGATCTTTAGTAAGAAGAACCAAGTGCGAATAGTAGTTGTACATAAAATCCCAGGGAGATTCGCACTACAATTGGCCGGAAAATACTATTAAATTACGCGAGGAAATTTCAACTTGATAAACGATTTGTAGAAGATGTATAATATGAAGCATGTAAATGTGGCATAGATGCAAGAATAATTGTGCATTTTTGCC # Right flank : AGTTTTACAGGTGGAATATACTTTTTTATAGACCTTGTAAATAAAATCGCTTAATTTAGATATGCTTCACTTAGTCTGTTCGATGACGCTATCAAAGCCATATCAATTCCCCCACCAAAACTAATTCAAAATAATGATTGACTTTTTAAACTGTAACAATTATACTTACAGTAAAGAAAGCAGAACATATATTTCCTAATAATAATATAACTAACACACAAAGAAGTATCAGAACCCACTTATCCATCAATAATATATACATTATTTAAAGGGAAATCCCATCTAATAATTGCAATACCACATTATTTATGAAGATAAATAGTCGAAGGCCATAATAAAGATATGCTCAGGAAAGAAGGTATATAAAAATGGTAGTAAACTTAAAATCCAACACAGAACCTAATCCGAAACCAGACGATAGCCAAAACTCGGAGATAAGCAAAAATACGAATAATGATATCATACCCACTCAAAAAACTAACATAGAAAACACGACAAAA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGAGGCTCGCGAGAGCCTTGTGGATCGAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [7,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGAGGCTCGCGAGAGCCTTGTGGATCGAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.90,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-76.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //