Array 1 36651-36142 **** Predicted by CRISPRDetect 2.4 *** >NZ_QSVP01000020.1 Escherichia coli strain OM02-12AC OM02-12AC.Scaf20, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 36650 28 100.0 32 ............................ GTTTCGTGCGTCTGAGAGCTTTTGAGCGCGTT 36590 28 100.0 32 ............................ AGCAGCCCCAATCCCTAAAAGAGCCATTCCCT 36530 28 100.0 32 ............................ TTCCATGCCCTGACGGACATTTAAAACCCGTT 36470 28 100.0 32 ............................ CAGACGGTTTCCGGTTGTGCTCAAGGCACTGC 36410 28 100.0 32 ............................ CATTCCGGACTGGCATCAATAGCAACCGGAAT 36350 28 100.0 32 ............................ GGAACCGTGGCGGCTCGGTGGTTCTAGAGATC 36290 28 100.0 33 ............................ GGTACCTTGCAGGCTCAAAAATTGCTTGATTTT 36229 28 100.0 32 ............................ TCTTGCGTCCCCTGAAATACATCAGGGGATTT 36169 27 92.9 0 .......................C-... | T [36150] ========== ====== ====== ====== ============================ ================================= ================== 9 28 99.2 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : TTTTTATGCGCGCCATGCCCACCGCATACAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAAGATGGCGGTGAGGCGGGGATTCGAACCCCGGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTGTTTTGCTGCCAGACCTCATAGGTGGCAACGGGGCGCTACTATAGGGAGTTGGAGTAAAACGGTCAAGAAGAATTTATATAGATTGATTCGTTTGGTTACGCAATGAACACACTGTTGGTGGGACGGAGATTATGACTGTATGTGTTCTGGTCAATTGTTTATCAAAAGCTATGCAGAAAATATGAGATTGAAGAAATACCAAATCGTCCCTTTTTTTAGGGCGAAATGTAACTCATTGATTTTGTTTACTGCTATTTTGAAGTCTGGAAAAAGGGGGTGAATCTGCGATTTTGTAAGTTTTAACAGTAAATCAATCGGATAGTCTGCTATTATTCCA # Right flank : CTCAACACTCCATCCTCTAATATTTATTCCCCATAACTCATAGACGCAAAAAAGGCCGGTTAAACCGACCTTTTACTCATTCTTTCTCTTCGCCCATCAGGCGGTAAAACAATCAGCGACTACGGAAGACAATGCGGCCTTTGCTCAGGTCGTACGGGGTCAGTTCAACAGTCACTTTGTCGCCCGTCAGGATGCGGATGTAGTTTTTGCGCATTTTACCGGAGATGTGTGCAGTAACCACGTGACCGTTTTCTAACTCTACGCGGAACATGGTATTAGGCAACGTTTCAAGAACGGTACCTTGCATTTCAATATTGTCTTCTTTGGCCATCTAATCCTCTGGGGTATCACTACCGTAATTTGAACCGGCAAGATAATGCCGAAGTTCTGTAAATAAGTAAAGATTTGCGCGCTAAATCGCAACAAACAGGTTCGGCACATTACTCCGAAAACACACGGCTAAGCCGCACCAAAAGCGCAACGTATAAGGGAGCGGTGAG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [58.3-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 46630-45710 **** Predicted by CRISPRDetect 2.4 *** >NZ_QSVP01000020.1 Escherichia coli strain OM02-12AC OM02-12AC.Scaf20, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 46629 28 100.0 32 ............................ ATGATTCGGCGCTGAATATCACCGTCTTTGTT 46569 28 100.0 32 ............................ AGGAACCGCGTCAGCCCCCTGCAAAGCTCATT 46509 28 100.0 33 ............................ TGGCGCGCCTGGAGGACATCCCGGAAGACCAGC 46448 28 100.0 32 ............................ GGTAACGGGTCAGGCCGACCGTGGAATACCGC 46388 28 100.0 32 ............................ GCCTGCAACCACTGATTGAGAGCTTCACACAT 46328 28 100.0 32 ............................ ATAAAGCGATCGACGCGGTTCCAGCCATAGAA 46268 28 100.0 33 ............................ TGATGCATCACAAACGGGAAGGGTAACGGGCGA 46207 28 100.0 32 ............................ AGACATCTGCTCAATAGAACGGGTGATCTCAA 46147 28 100.0 32 ............................ AGATCCAGTTCATCATCCAGCGCAGACTCTTG 46087 28 100.0 32 ............................ CGTCACCCGCGCAGCAGTCACACGGGCGCACG 46027 28 100.0 32 ............................ ACCGCCGGGGCGGTTTCCCCGATGAAAAGGAA 45967 28 100.0 32 ............................ GTGGCGCTAGCAATGAGATTTGCGGAAAAAAG 45907 28 100.0 32 ............................ GTGCTGCCCGCCAGCGTGGCGTAATTGTCACA 45847 28 100.0 32 ............................ AAAAAGTTGCGCCGCGTGACCGGCACTATAGA 45787 28 100.0 20 ............................ CTGAACGTTGAAGAGTGCGA Deletion [45740] 45739 28 78.6 0 CC..................T...C.CT | C,A [45713,45716] ========== ====== ====== ====== ============================ ================================= ================== 16 28 98.7 31 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : AAATTCATCGTCGAGTTGCAGGTTCAGTTGGATCAGAAAGGTGTTTCTCTGGAAGTGAGCCAGGAAGCGCGTAACTGGCTGGCCGAGAAAGGTTACGACCGGGCAATGGGCGCACGTCCGATGGCGCGTGTCATCCAGGACAACCTGAAAAAACCGCTCGCCAACGAACTGCTGTTTGGTTCGCTGGTGGACGGCGGTCAGGTCACCGTCGCGCTGGATAAAGAGAAAAATGAGCTGACTTACGGATTCCAGAGTGCACAAAAGCACAAGGCGGAAGCAGCGCATTAATCTGATTGTCTGGTAGGTTGGTTAAGTCCGTGATCTCGTCAGGGGTTACGGACTTTTTATTTATGGGGGGAGGAGGTTCAGACCCTTTTTTTAATGATGATGCTAAGTTATTGATAATTAGTGCTGCGGGTAGGTAAGGATAAAAAAGGGTGGCAGCAGGAGATTGAGATGGTTTTGCTTTATTAACAACGGGCTAAACGTGTAGTATTTGA # Right flank : ACGATAGTGTTAGACGTTTGGTCGTGCAATGACACTCTCAACTTCAAACCATTAGCGTTAGCACGCAATAACAATCGTAATAATTGCGATGGAAATCAATTTTCAGCACATAAATCAATGCTGTACTAAGCCCAATACCTTCAAATATAAAATAATCACAGGATGTGTTTATGTCTTCGAATTACCTTACGCCTTCCGATCTCAAAACCATTCTCCACTCCAAACGCGCCAATATTTATTATCTGGAAAAATGCCGGGTACAGGTGAATGGTGGGCGGGTGGAGTATGTTACCAGCGAAGGTAAAGAGTCGTACTACTGGAATATCCCCATTGCGAATACCACGGCGTTGATGCTGGGAATGGGAACTTCCGTTACCCAGGCGGCGATGCGTGAATTTGCTCATGCCGGGGTGATGGTAGGCTTTTGTGGTACGGATGGCACGCCGCTGTATTCAGCAAATGAAGTGGATGTTGATGTCTCCTGGCTCAGCCCACAAAGT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [50.0-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //