Array 1 65903-67250 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHBSE010000006.1 Pseudomonas aeruginosa strain PA761 Scaffold_6, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 65903 28 100.0 32 ............................ AACAATGGAAGACTTGCAGTCAGCATTCAGCA 65963 28 100.0 32 ............................ TTCACCAAGGAGTTGTACGCATTCCCCGACAA 66023 28 100.0 32 ............................ TGAATCTCAGACGCCTTCACCATGCACGACAA 66083 28 100.0 32 ............................ TGTCAGAAGGGATTACCGCGGACCTGGTCGCA 66143 28 100.0 32 ............................ TCAGGCTCATTTCGTTGTCCTCGATGCCCCGG 66203 28 100.0 32 ............................ GGGAGGGCATGTGATGCGAGCAGACGAGTACC 66263 28 100.0 32 ............................ GGGCCCGACGGCTAGTAATTCGCGGAGGATGG 66323 28 100.0 32 ............................ TGTCCGCAGCAGGCCGGTAATCCGGATAACTG 66383 28 100.0 32 ............................ TGTCCGACAACCCGCATAGCATCCCTGAGCAA 66443 28 100.0 32 ............................ AAGGACTCTGATCTCTTGACTCACCATTTCCT 66503 28 100.0 32 ............................ CGCTGCCATCCGGCGCATTTCCCTCTCATAGC 66563 28 100.0 32 ............................ AACATCCAGCCCGAGCTGAGCGATATCCCCCG 66623 28 100.0 32 ............................ TGCTCGCTGATGACCAGCCGCAGCGCATGGTT 66683 28 96.4 32 .......................G.... CGCAAAGCCCCGCAGGACAATGACTTGATATC 66743 28 100.0 32 ............................ AATCCGAGGCGGAGTTCAGCCACTTGGCATAG 66803 28 96.4 32 .....................C...... GCAGTGATCGAGCGCGCACGGTCGCGCAAGAC 66863 28 100.0 32 ............................ AGAAGCGCATCCAGCGATACGAAGATGCACTC 66923 28 100.0 32 ............................ AACCAGCGTGTCGATGCCGAAGCGAAGGCCTG 66983 28 100.0 32 ............................ AGTGAGCACGATCATCATGTCGGCCTGCTGGC 67043 28 100.0 32 ............................ ATCACCGGAGGCCACGGATTCGCTGTAGCTCA 67103 28 100.0 32 ............................ ACCAGCTGCTGCGAGTGCTGGTTCGCGCTGGC 67163 28 96.4 32 ........................A... TGTCCCGAAGTTCATAAGCGGGCTTCGGGCGA 67223 28 75.0 0 T.........AC.....TC.TC...... | ========== ====== ====== ====== ============================ ================================ ================== 23 28 98.4 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CGAAGTCGTCGAGGACGAACCAGGCCTGGTCGTCGATCAGCAGCGCGCGCAGCAATCGCTGCTGTCGGAAGAAGTAGTGCGGGGCAAGCTGGGTATGGCCGTGCATAGGAGAAATCCTTCTCTGAGCTGTCCGCTGCCTGGCTTCTGCCGGCGCGGCAGGGAGACAGGCCGCTCGTGGGTGTTGGGCCAGCAGGCTGTGGCCTGCCGGGAACCGAAGTCGCCGGCGAAAAAAGCCTACTGACAGCGCCTGTAGGACGGCAATGGCTAAGCCTTGTACGAAGTCTCCGATGGCACAAGCCCGCTGAACAGCTAGGCCGTTCTGAACATTACGCCGGCATGGAGAAAACAGGGGATGGACGCTATGCTTGGGAACCCTTTTTTTGGTGGTTTTTTAAAGCCCTTTTAGATCAGAGGGTTAGAGATCGCTGCAAAAAGAGGGTTTTTCCGGGCTTTGGCGCTGGAGCCCTTGGAGCTTGGAAGGTTGATGGTTTTTTGGTCTA # Right flank : ACGGCCAGCAGCCCTGAAGTATCGATTGATGCGGTTCGCTGTCGGCCGGGGTCACCAGTCGAAACGAAGTCCCTTTCCATGGAACTTCGTTGCGGACATGCCGATGAGGTGCTGACGGGGTTCTTCAGAACCAGGGAACGGAACCTCCTTTGCTCAACCCGTAACAGGTGAATCCTCCTTCCTCTGCCGTCGCCTGCAACGGCCCGTGGCGGATGAAGAGACGGAAGTGCTGTCCGGTGCTCTGGCTGCGTAGCGTGACGAAGGGCAGGTCCAAGGTTCTCGCGACCGTATCGGGAATGCGTTTCCGAGCCTCCTCCTCACTCAGATCGTGCCGGCGCATGAGCCGCCGCCGCAGGCGTTCCGGATTGCTTTTCGCCTGAACCCGACTGACCTGACGGTACGGTGTGGGGTGAGGCACGACTGCCGGTTCTCCGAATTGCAGATGGTCCCGCAACCCTTCCAGCCAGGGCCGGGCGAGCAGGGCACGAAGGTCGTCCGCC # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 77964-75775 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHBSE010000006.1 Pseudomonas aeruginosa strain PA761 Scaffold_6, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 77963 28 100.0 32 ............................ TGCAAGACCTGCTAGCAGAAAGAGTCACCCTT 77903 28 100.0 33 ............................ GAGGTCGACGGCAAAGAGTGCCCGATGACTCAG 77842 28 100.0 32 ............................ TGTTCCAACTCGATGCTGCGTGCGGTGCTCCG 77782 28 100.0 32 ............................ TGTTCGAGGAATTCATCGAGCACCACAAGGAG 77722 28 100.0 32 ............................ GGGAGGGAAGGGCAGGCAGAAACGAAAAGCCC 77662 28 100.0 32 ............................ TCGAGCTTGTCGAATCCCCTCAAAAACTCCCC 77602 28 100.0 32 ............................ TGGGGCGAAACCCCTAGGCGCCGGGCTAGCTC 77542 28 100.0 32 ............................ TCCTCAAGTTTTGTCAGCCGAGCCAGCATTTC 77482 28 100.0 32 ............................ TCGATGCCCCGACGAACCGGGGCGGGGTGGTT 77422 28 100.0 32 ............................ TGATTGCTGCGGCACCTGAACTGCTCTCCATT 77362 28 100.0 32 ............................ TACCCCTCATTAGCCCGGCAAGTCCGGGCATT 77302 28 96.4 32 .....................C...... ACTCTGCGCCTCGACGTCGGGATCTACGAAAA 77242 28 100.0 32 ............................ AAAATGAAACGGATCAGCTCGCCGACAATCTC 77182 28 100.0 32 ............................ TGGAGCGCTGCACCATTACCCGCGCAGCCCGA 77122 28 100.0 32 ............................ ACCCGAATGCATCACCAACCCACGGCGTGCCC 77062 28 100.0 32 ............................ CTCCAGAGCGGGTCCGACAATAGTCAAAACCC 77002 28 100.0 32 ............................ AGGACTCAGCGAGCCTTCACAAGACGCCTCCA 76942 28 100.0 32 ............................ ATCGAGCAGTGCATCGCCGTCTACAACCAGCT 76882 28 100.0 32 ............................ TGATCGACATCAGGAACGCCCACAGAGGCCGC 76822 28 100.0 32 ............................ ATCACGCCCCAGCCACTTTTCAACCCCGCACT 76762 28 100.0 32 ............................ GGTGTGTGCGGCCAGCTCGGACCCGAACTTGA 76702 28 100.0 32 ............................ AGTCACAGCCGCCGCAGCAGCCAGACCGCCCG 76642 28 100.0 32 ............................ TTAGCGAGTCACCGGGACAAAGGTGACCACGG 76582 28 100.0 32 ............................ TGTCCGAACTCCCATCTGTTGCCCTGATCAAC 76522 28 100.0 32 ............................ AGAAACTGCGGAACCGGAAGTGCATTGATCAA 76462 28 100.0 32 ............................ ATCACGTGTGATTTTCGATGAACGTGATTTTT 76402 28 100.0 32 ............................ GGAACGAAGCGGGTGCGACACGTCGCAACTGC 76342 28 100.0 32 ............................ AGACCATCACACCGGTGACGCTGCACATCGTC 76282 28 100.0 32 ............................ AGCGGCCTGGACCTGGTTCGGCCCGTCCAGGC 76222 28 100.0 32 ............................ CAGAAGCGCCGGCCGTTGGCGAAGAACCAGTA 76162 28 100.0 32 ............................ GATACCTGACGGCCTGGTGCTGGATCACCTGT 76102 28 100.0 32 ............................ TGTCCTTTCAACTCGGTCTGCTCGTAGAGGTT 76042 28 100.0 32 ............................ AAGACGTGGCAGGCGGCCTACAACCACGACGA 75982 28 100.0 32 ............................ TGACTGCGGGGCTGCACGACATAGTCGTCGAC 75922 28 100.0 32 ............................ GTATGAAGTGTGTTACCGCGTGGGCGATTCCT 75862 28 100.0 32 ............................ TCGTAGTGGCCCCACGTCGGCGGTAGCTCGCC 75802 28 96.4 0 ...........A................ | ========== ====== ====== ====== ============================ ================================= ================== 37 28 99.8 32 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : ACATGTGTCCGCGTAGCGCCACCCTGTACGTAGACACCCATGCACTCCCCACGCACTTGTTCGACAACGCGAAAGTGCGCTTGAGGTCGGCGATCAACATCCTGGCCATGACCCGTTTGCTCGATGAGAAAGAAGAGCCCGGCGGCACCCTGGCCTACATCAACGGTGCGTTGCTGTCGCTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTCCCTGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGCGGCATCGCCCATCACAAGACCTTTCGCGCCCGAACGGCACGCTTGATCGCCGTCCCGGTCCTCGCGAAACGGCCGCCAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGCAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCGGGAAAAACTCGGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGGAGCTA # Right flank : CTCGAACCCACCTCGGCCACAACAGCCACCGGGTTCGCTGCCGTCTAGGCAGAACCACCCTCCCCATCCCGCTACCAAACATCCGAATATAAAAGTTCCTACCCCGCCCGCCAGCCTCGCCCGTCCACGACAATGTGCCCCGCTTGGAAGCTCACGCTCCTCATACAGACGAAAACGGGGTAGCGGCAATCGGCCATATCCGCTAAACAGTTGCCTTGGCGCAGAATTCGATAGATCCGATAGGGACAGGCCACGGTCAGCATGGACGACATTTCTCCCAGCGAACTGAAGACGATCCTTCACTCCAAGCGTGCCAACCTGTACTACCTGCAACACTGCCGGGTACTGGTCAACGGCGGGCGGGTCGAGTACGTCACCGACGAAGGCCGGCATTCGCACTACTGGAACATCCCCATCGCCAACACCACCAGCCTGTTGCTGGGCACCGGTACCTCCATTACCCAGGCAGCCATGCGCGAACTGGCCAGGGCCGGGGTATT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [33.3-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //