Array 1 193142-192624 **** Predicted by CRISPRDetect 2.4 *** >NZ_WPLY01000001.1 Salmonella sp. S052_01142 NODE_1_length_635274_cov_147.141, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 193141 29 100.0 32 ............................. GCGGGACCTCCAGCGCCACTGCTAATATTCGT 193080 29 96.6 32 ............................T GTCCCGTACGAGATACTCCAGCGCCTGCCCGC 193019 29 100.0 32 ............................. GAGTAATGGATGCCCTGCCCGGCGATTGGATT 192958 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 192897 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 192836 29 100.0 32 ............................. GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 192775 29 100.0 32 ............................. GCAGAAACAGAAACCGGATATGAGCCATCCAT 192714 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 192653 29 93.1 0 A...........T................ | A [192626] ========== ====== ====== ====== ============================= ================================ ================== 9 29 98.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGTTGCGGAAATGCCGTCATGGCTTGGGCGACCAACACGGAGTCGGGATTTGAGTTTCAGACATGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTTGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCAGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 210757-209265 **** Predicted by CRISPRDetect 2.4 *** >NZ_WPLY01000001.1 Salmonella sp. S052_01142 NODE_1_length_635274_cov_147.141, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 210756 29 100.0 32 ............................. TTAGTCGCACCACCGGAACCTACCTGCGCCTC 210695 29 100.0 32 ............................. TTGTCATGCGGCGCTGCGAGCGTGCGGCCTTT 210634 29 100.0 32 ............................. CGTCCAATACGAGCCGAGTGCGCACGCCCTTA 210573 29 100.0 32 ............................. GGCTAGCCTACCCTTTAAGGGGTTCCACAACG 210512 29 100.0 32 ............................. GCTGCCAGCACTACTACCCGCCGTCGTTCCGC 210451 29 100.0 32 ............................. CGTTTATGGCCGGTGCAAAATTTGGTGCTAAT 210390 29 100.0 32 ............................. CGCCGCGAGGTGATCGAGATGCTTGAGGGTAT 210329 29 100.0 32 ............................. GTATCTCGAAGAGCGTCAAAAAAGCCGGAATG 210268 29 100.0 32 ............................. GGGCATGAGTGCTACTGCTTTCAACCCGAAAG 210207 29 100.0 32 ............................. ATAAATTATCGGGAAATCATAATCAGCGCCGC 210146 29 100.0 32 ............................. TCGAGTTCTGGCATGTCAGACTGACGTATCGC 210085 29 100.0 32 ............................. AAAACCCTCAAATATGCGTAACGGGAGGCTGG 210024 29 100.0 32 ............................. GGGATCGCGCTGGCGGTCGCATCCGTTGCCGT 209963 29 100.0 32 ............................. TCAGCGTAGGTTGTTGACGTCCCCACCAGCCC 209902 29 100.0 32 ............................. CCATTTTTGATCATCTCCTCCAGCCTGCTGAG 209841 29 96.6 32 .............T............... TGGGAACCGTCAAGGCCCGAGGGTGACGGCTG 209780 29 96.6 32 .............T............... GATTGTTCAGATTGGGAATTTGACCAACGCCC 209719 29 96.6 32 .............T............... GTTACTGTATTATCTCTCGCATAGACCCGGCA 209658 29 96.6 32 .............T............... CCTGAGGAGATATTCACCTTCCTGCATTTCAT 209597 29 96.6 32 .............T............... TCTGGTGGCTGCCTCATATTGTTGCGCATCTA 209536 29 96.6 32 .............T............... AAAAAAATGCGATCGGTACTCAACCCGGCCAC 209475 29 100.0 32 ............................. CGCCGGTTTCGGTGGGGGCTGAATCCTGAACC 209414 29 100.0 32 ............................. TGGGACATTCTCGCTAGTCACGGTCATGTCAT 209353 29 100.0 32 ............................. TGCGCCAACGACTGGAATTTTTGCGTGTAGCC 209292 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================ ================== 25 29 98.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCGCGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGATATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGATCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTAGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCTAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //