Array 1 2287511-2289491 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP044188.1 Salmonella enterica subsp. enterica serovar Albert strain AR-0401 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 2287511 29 100.0 32 ............................. TTTGCCGATCCCCTTCCAGACCACCCTTTACA 2287572 29 100.0 32 ............................. TGCAGAGTTGTATCTTACCCTGTTTACGTTTC 2287633 29 100.0 32 ............................. TTATCCCAATATATTTCGCTATCAGTTACATC 2287694 29 100.0 32 ............................. GACTGTTTATACCGGATTCCATGCGTTTTCAG 2287755 29 100.0 32 ............................. GAATTACTGGCTAACGACGAACTGACAGTTGA 2287816 29 100.0 32 ............................. CCGGACCTAAACCTGAAAAAACCGACGCCCAA 2287877 29 100.0 32 ............................. GCTCATTAAATAACTATATAACCCCCGGACTC 2287938 29 100.0 32 ............................. TTCCAGAACCGTTTGACTTACTGTGGCCATTA 2287999 29 100.0 32 ............................. GGCTTTGGTGAAGATTTCTGATTTGGTCATTT 2288060 29 100.0 32 ............................. GATCGGGTGGTGCCGGTGGGCCATGTGGCGCT 2288121 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 2288182 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 2288243 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 2288304 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 2288365 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 2288426 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 2288487 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 2288548 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 2288609 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 2288670 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 2288731 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 2288792 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 2288853 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 2288914 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 2288976 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 2289037 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 2289098 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 2289159 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 2289220 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 2289281 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 2289342 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 2289403 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 2289464 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 33 29 98.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-12] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 2305622-2306426 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP044188.1 Salmonella enterica subsp. enterica serovar Albert strain AR-0401 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 2305622 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 2305683 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 2305744 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 2305805 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 2305866 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 2305928 29 100.0 32 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATT 2305989 29 65.5 13 ..............GA..C.TTCC.G.GC ACGTTACTCGATC Deletion [2306031] 2306031 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 2306092 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 2306153 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 2306214 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 2306275 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 2306336 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 2306397 29 96.6 0 A............................ | A [2306423] ========== ====== ====== ====== ============================= ================================= ================== 14 29 97.0 31 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 5.99 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:-0.11, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //