Array 1 2-684 **** Predicted by CRISPRDetect 2.4 *** >NZ_LLHO01000341.1 Acinetobacter baumannii strain ABBL117 contig-4000037, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 2 28 100.0 32 ............................ TTATTGGTCCTGGTCAGTGGAATGGTGATTCT 62 28 100.0 32 ............................ TGGGTAAAAGCCGATGGATTAATCATCTTTTG 122 28 100.0 32 ............................ ATTAACAAGAGTGGAATTTATTGAACTATTAA 182 28 100.0 32 ............................ TCTGGGTTCTTTTCGCGTGTATGGGATACTTG 242 28 100.0 32 ............................ TGTAAAGTCATTCGTAATAACCGTTATACGGC 302 28 100.0 32 ............................ AAAACCAATCAAATAACGGTTATGTGGCCACA 362 28 100.0 32 ............................ CATAGCGACATATAGTTTTGCCCGGATCTGAT 422 28 96.4 32 ..................A......... TGTTTCGCGTTGAGGTCCGGGTAATCGCCTAT 482 28 78.6 27 ....C.....CTCC..........T... GTCTTGTATCCTGATTTCAAAGATTCA 537 28 92.9 32 ....C....T.................. ATATCACGCGCCATTGCAAGTTTTCTACCGAT 597 28 89.3 33 ...A........CC.............. TGATCTTTAAGATTAAGCATCCGTTCTGTTTTT 658 27 85.7 0 ...TG.......C...........-... | ========== ====== ====== ====== ============================ ================================= ================== 12 28 95.2 32 GTTGTTCATCGCATAGATGATTTAGAAA # Left flank : TG # Right flank : AGAGTTTCTTTCAAAATTTAAGACGACGTATTTTGTCGTTAAAAGGTTGTATTAAGCTGATAAAAACTTTCTCTTTTTAAAACAAAAGATTATATTTTTATGATATTTAAACTTTAACAATAAACTATGCATGTCATTTTCATCTCGGCTTGTGAAAAAAGAGCTTTAAAGAAAACTCGAGCAATTTTGGATAGCTATGCTATTCGTACAGGACATTCGTCTTGGCAAGCACCAATGACAATGGACGGCTTAAAAGAAATTCGTAGTGCATTAAAAAAAGTAGCTACCCGACAAACTGCGGTGGCCGCTTACATTAATTTTGGTGTACGCAGAATGAAGCTTGCATGGGTTGTGGGAGCAAAACATAAATTTGCACACGATGGTGCATACCCAGTTGCATCGACTAAGAAACAGCAAAAGTTACTCATGCTTGATGAGTGGGTCAAAGTAAGTAGCTTGTTGGCAGGTGCAGCAGGAGACATGCATGATATTGGTAAGGC # Questionable array : NO Score: 6.01 # Score Detail : 1:0, 2:3, 3:0, 4:0.76, 5:0, 6:0.25, 7:-0.00, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTTCATCGCATAGATGATTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.86%AT] # Reference repeat match prediction: F [matched GTTGTTCATCGCATAGATGATTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.70,-3.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-16] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [1.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.27 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 14665-10134 **** Predicted by CRISPRDetect 2.4 *** >NZ_LLHO01000199.1 Acinetobacter baumannii strain ABBL117 contig-2000068, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 14664 29 89.7 31 ....G.......CC............... TATTGTGAGCACCTTGATTGCTGTGCGCTGC 14604 29 89.7 31 ....G.......CC............... ACAGCGGGAAACTTGAAAGTCATTGCGAAAT 14544 29 89.7 31 ....G.......CC............... GATTGCCCCCTGAGGAAACTGTATAAAGTCC 14484 29 86.2 31 ....G.......CC..............A AACACCAACTAAGCCATTCCCTATTCAAAAA 14424 29 86.2 31 ....G.......CC..............A TGAACTTTTAATGGATGCATGCGCCGCCCAC 14364 29 86.2 31 ....G.......CC..............A CGAACAACGATAATTTGGAATACACGCTCAT 14304 29 89.7 31 ....G.......CC............... CAGGAGAAAGATCGTTCAAAAGCTCAAAACC 14244 29 89.7 31 ....G.......CC............... GAAAGTTTTGATATCCACTCTGCTGTTTCAA 14184 29 86.2 31 ....G.......CC..............A GATGGTAAGAAAATTATTGAGTCTGGAGACA 14124 29 86.2 31 ....G.......CC..............C GACAGTCCAGTTGATCAGATCTTGATTAGAC 14064 29 86.2 31 ....G.......CC..............A ATGACATGGTTCAACAATTAAATTCATCTCA 14004 29 86.2 31 ....G.......CC..............G TTCTTTTCTGCAATATGTGCCATTAGGTATT 13944 29 86.2 31 ....G.......CC..............A TTTTAGATGAAACAAAAGATAGCAGGATTAT 13884 29 86.2 31 ....G.......CC..............A GACCAAGCGGATTGACCGTATTGATAAATAA 13824 29 89.7 31 ....G.......CC............... TCTGCAATACAAATCACTGGATCAGCCAGGT 13764 29 89.7 31 ....G.......CC............... GAGTCTTTGATTTCCCAAATATTACTTGAAA 13704 29 86.2 33 ....G.......CC..............C CTGAAAAATTTCACTGTGTCCATTTCGTTATTA 13642 29 89.7 31 ....G.......CC............... ATGTCTTTAAATTCTGAAAAAACACTTGTTC 13582 29 86.2 31 ....G.......CC..............G AAAAAATTGAAAACTTTTTAGAAGTAAATGA 13522 29 86.2 31 ....G.......CC..............G CCACACATGCCTAAAAACGCAAGTGCGCTCG 13462 29 86.2 31 ....G.......CC..............A TTATCAGATAAGCCTTTTATGAATGATCGTT 13402 29 86.2 31 ....G.......CC..............A TTAGCTATTAGCTTTTTGGCAACAACAACAG 13342 29 86.2 31 ....G.......CC..............A GTTCATGAAAACAGCTTTAAAAAGAAAGCAC 13282 29 89.7 31 ....G.......CC............... CCGAAGGTAGTGAAGCTGTGTGTGAATTTAC 13222 29 89.7 31 ....G.......CC............... TGCAAGCTCGTCTAGCTAAAGTAGACCCTAA 13162 29 89.7 31 ....G.......CC............... GGTACGACAACTACGAAAAGCTGAGCAAAGT 13102 29 89.7 31 ....G.......CC............... CAACTTAAATGGATGCTCCCCGCGGTGAATT 13042 29 89.7 31 ....G.......CC............... TGATTGCTAGACGGATTTTTAGGCAGATCAT 12982 29 86.2 31 ....G.......CC..............G AGTTTAATGCGCTATATGGCGACGAGGATTT 12922 29 86.2 31 ....G.......CC..............C ATGCAATCGCGTTGATTACCGCAGCTTCGAA 12862 29 86.2 31 ....G.......CC..............A TGAGCCGCAACCATACGGTCTATGACTTCCA 12802 29 86.2 31 ....G.......CC..............A TAGCGCCCTGCTCTATGTTGTCACTTCCGAA 12742 29 89.7 31 ....G.......CC............... CCAAGTGAATCGGCTCCTAATGCAAATGACC 12682 29 89.7 31 ....G.......CC............... GAAAACCAATATGCTGCCTAATTGCCATAAG 12622 29 86.2 31 ....A.......CC..............G ATCTGCGTCCATTTGTACTTGCTGCGGGTGC 12562 29 96.6 31 ............................A TATACAGCACCGCTTAGTGCGACGCGGTCAT 12502 29 96.6 31 ............................G CCCACAGGTTGAGCATCAACGGCCATCGAGA 12442 29 96.6 31 ............................A TCATAGAGCTCACTTTGTCGTTGAGCCTGCA 12382 29 96.6 31 ............................A GAAGGCCCGTAATTTAACTGTAAGCCGTGGT 12322 29 100.0 31 ............................. CTTCCTGAGTTTTAATCCCATTTGCCTTACA 12262 29 93.1 31 ......T.....................C ATCTTCGCCAATTGCTTTTGGAGAGTTGCTA 12202 29 100.0 31 ............................. TCAGGGAATTATCGTGAAACTTTCATTGACT 12142 29 100.0 31 ............................. GCACCAGCTGCTGGCTGGTTGAAATCTGCAA 12082 29 96.6 31 ............................A GAAGGTGCAGAGTTTTGGGACTTTGGGTGGT 12022 29 100.0 31 ............................. GTTTCAAAAGCTACACCATCAAAACCATTGC 11962 29 100.0 31 ............................. ATTTAAGTAATAAGTTTAATAACGACCTAGT 11902 29 96.6 31 ............................A ACACGTTCTCTATATCGCTGTTTGCGGTCAT 11842 29 100.0 31 ............................. TCAGTTGGATATGCCTTTGATACCAAGAAAC 11782 29 96.6 31 ............................G CCTGCAGACACGGATTTACGCAGCTGATCGA 11722 29 96.6 31 .........................C... AACCAAACTATGTCATCGATCGGAGATTTCA 11662 29 100.0 31 ............................. TAAAATAAATGCCTGTGGTTTTTTCTTAACT 11602 29 96.6 31 ............................A GTTTCCGAAGTTGAATTACACTCGCCAAGTT 11542 29 100.0 31 ............................. AACACAGTGATTTGATTACCTTGAGCAACCC 11482 29 96.6 31 ............................A TCTTGATGCCGAGGTCTTTAGCTTCTTGAGA 11422 29 100.0 31 ............................. CATCCACCTTTGATGAAACGGATCCACGCAA 11362 29 100.0 31 ............................. CTTGTGTGACGGCCTCCACTCCAGATCCCGC 11302 29 100.0 31 ............................. TAAGCTTCAAAAATAGCCATTGATTATAAAA 11242 29 100.0 31 ............................. GACAACTTTCCACGGCAATCAGGGCTTTCCA 11182 29 100.0 31 ............................. AAAGATGCACGTGGCCTAATGCAAGTTATTC 11122 29 100.0 31 ............................. TTAAAATTAGGTGCTGAGTTACCACGGCTCA 11062 29 100.0 31 ............................. AAACCAAGAACTTGAAGATTTTGATGCTTAT 11002 29 100.0 31 ............................. AAAAATAGTGTGTTAATTATTTATGATGAAA 10942 29 96.6 31 ............................C GTATACATGCACATCAATACGATATCCCGAT 10882 29 96.6 31 ............................A TACTATTATAATGATCTAAACCCATTACAAC 10822 29 100.0 31 ............................. GCAGCTACTCGACATGTTGGTAGGGCAGATG 10762 29 96.6 31 ............................C AGTCGGCTGGTGCTAATTGAATAAAATCGTT 10702 29 96.6 31 ............................A GATTGAGGCGATTTTTATCGCGGACATTGCC 10642 29 96.6 31 ............................C AGTCCCCGCTTTGAAGCATTCCCATCAGTAC 10582 29 100.0 31 ............................. CACAGCTATCGTCTGGCTGCCGTCGCGTAGA 10522 29 96.6 31 A............................ TATTATTAAACGGGAAAAGTATATTCTTGCT 10462 29 96.6 31 ............................A TACTATTATAATGATCTAAACCCATTACAAC 10402 29 96.6 31 ............................A TCATCAATAAGTTGGCCTTGATTTAAATAGT 10342 29 96.6 31 ............................A GATACAAACGAGTTCGCATCTCGACCAGAAG 10282 29 96.6 31 ............................A TTATCCAGATAAAACCATATCTACAAAGTGG 10222 29 100.0 31 ............................. CAACCTGAACACAGACATACATGTTCTATTG 10162 29 86.2 0 ...GC...................AT... | ========== ====== ====== ====== ============================= ================================= ================== 76 29 93.2 31 GTTCTTCATCGCATAGATGATTTAGAAAT # Left flank : TTAAAAACTTATATAATTGATTTTAAGAGTTTTGTTTTAACTTAACTCT # Right flank : TTGAATCTTAAAAAGAGAAAACCCCGAAACTTTCGTTTCAGGGCTTTTCACGAATCTTGGTGGAGATGGCGGGAGTTGAACCCGCGTCCGCCAGCACTACGCTCGAGAATACTACATGCTTAGATATCGTCTATTGTTTTAACACCAAGTGACCCGACGAACAGGGTACAAGGTGCGATCCTCTAAGTTTGGTATAAAGCCCCGAGGCTTGACTCTATACGGACTTGTGTGCGTGCGCTTCAGTCGGGTTCCCAGACCACAAGTATTCTAGGAAGCGGACAAGCGGCCCTTAGGCAGCTAGAGCGTAAGTTTCGTCGTTTGCGACTATTTAAATGCAAATTTTATTTACGAGAGAAAATGCGCTCTCGGCATGCATCTATGAGTTTCATCACCGGCGTCGAAGCCAATAACATCCCCATGAATGTCTGCACATCATAGCATAACTAAAATAAAATGCTGTGCATTTTATCAACAGTCTGCCACTGATGAACATACTTACA # Questionable array : NO Score: 5.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.66, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.31, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCTTCATCGCATAGATGATTTAGAAAT # Alternate repeat : GTTCGTCATCGCCCAGATGATTTAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.86%AT] # Reference repeat match prediction: R [matched GTTCTTCATCGCATAGATGATTTAGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-3.80,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //