Array 1 6107-5807 **** Predicted by CRISPRDetect 2.4 *** >NZ_ASYN01000146.1 Porphyromonas gingivalis SJD5 contig54, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 6106 36 100.0 30 .................................... ACTTAGTGTATTGATGTTAGCTCCGGAAGT 6040 36 100.0 30 .................................... AAATAGTAGCTTGCAGAGAAATATCAATTC 5974 36 100.0 30 .................................... AATAATCGGATTTTCCAGATTATATCTCGT 5908 36 100.0 30 .................................... TTAATTTTTATGATCGAGAGCGACCGAAGT 5842 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 5 36 100.0 30 GTTGGGAATACCCTTAGTTAGAAGGGTGGAGACAAC # Left flank : CAAAGCTACGTTGGATGAAGTCAAGACTTTGTTGGGCGAATATGATCGCTGCCGCATCAAAATCTTCGATTGGGCATTTGCACTCGAAGGAGCCATCATGTCTGATCGCGACTTGAAGCCGTATTTGCACGAGTCGTCGAGCAGGGAGGGTAAGAGTGGAGAGCATTCTACACTGGTGAAGATGCTGGTGGAGAAGAAAGGCTGTCTGACTCCTGACGAAAGCCAATACCTGATTCTGATTCGCAACAAGGCTGCTCACAACCAATTTCCCTGCGCTGCAGAAATGCCTCTTATTTACCGAGATGTGAGTGCAAAGGTCGGTAGCATTGAGGGATCTTCTGCCAAAGATCTGCCGGAAGGTAGTTCTCTGGTAGATTCATTATGGAAAAAATACGAAATGATAATTCGGAAAATTCTTCCGATTCTCGACCCTGAAAATAGATTTTTTGGAAAGCTTTTGAATAATATGTCTCAACCTATCAATGACTTATAAAGGGTCG # Right flank : TATTATTCCGAAAGGAGAAAGAGGGGAAGTTGTGCTGTTGATGGGGAAGTATTTCTAAATTAGCGATCGCTAAAGTGATGGAAAATGGATAGGGGGATCGTGTTCGGAGGAGAGGGTTGTAGCCGACAGTGTTTGTGTGCAGCTATCCATTCGATTGGGAGGCCTTTCGTTCTCTTCCTTGGCTTTTGTCTGTAAATCTCGATTCTTTTAACTCATATAATTGTCTGTTCCTATCAAACGCTCTCATCTCCTTATCAGTGCTGCTTCATCGGGTGGTGGAAAGACTACTTTCACGCTCGGATTGCTACGATTGCTTCGAAGGCGCGGTCTCAAAGTGCAGCCTTTCAAATGCGGTCCCGACTATATCGATCCTAAGTATCACCGCCTTGCATGCGGAACGGAAACGGTGAATCTGGATGCTTTCATGATGAGCCGGGAGCATATCGCCCGACTTTATGATCGCTACGGCAGTGAAGCCGATGTTTCCATCGTAGAGGGGG # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGGGAATACCCTTAGTTAGAAGGGTGGAGACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [61.7-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.37 Confidence: MEDIUM] # Array family : NA // Array 1 64555-66196 **** Predicted by CRISPRDetect 2.4 *** >NZ_ASYN01000108.1 Porphyromonas gingivalis SJD5 contig2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================================== =============================== ================== 64555 46 100.0 30 .............................................. CGGAGGTATCTATCGCTTCCATTTCTTCAC 64631 46 100.0 30 .............................................. AAGCCGGCACGAGCCATCTGTCGCAGCGTC 64707 46 100.0 30 .............................................. ATCAAGAGATAATAAACAGCCGAGATATAT 64783 46 100.0 30 .............................................. CGACCGTTCTTCGGGTATATTTTCTTTCCA 64859 46 100.0 30 .............................................. GGAAAGGTGAGAGTCGGCAAGTTGGTGAAG 64935 46 100.0 29 .............................................. AAGGGAAGCGTATTTCAAAAAGGAGGAGG 65010 46 100.0 30 .............................................. AGCATCAGAATCGGGAATCTTGCCAAAAAC 65086 46 100.0 30 .............................................. TCCACTGAGTTCGTTTCCTGTGTCTTGGTT 65162 46 100.0 30 .............................................. GTAGCGGCGCGGTACTCCATTCGCGCGTTT 65238 46 100.0 30 .............................................. TGCGGCTTGTTCTATGATAGATTGATTGAG 65314 46 100.0 30 .............................................. TTGCGGACGCTTTCCCATCGTCTCCGGTCT 65390 46 100.0 30 .............................................. TATGTCCGTTCTGGGATATTTCCGGTGGCG 65466 46 100.0 30 .............................................. GTCCCATTTGTCTTTCTCGTTCGGATAAAG 65542 46 100.0 30 .............................................. AAATGCGTGTAACAAGAATAAATCACTTTA 65618 46 100.0 30 .............................................. TTGTAACTGTGAATTATCGTATCCCTGCAT 65694 46 100.0 30 .............................................. CAAGCGTTTTCGGCGAAAAATTTTCGCAAT 65770 46 100.0 31 .............................................. TATGCGGTAGCGTATGACTTGAGCCGTATGA 65847 46 100.0 30 .............................................. TCTTTTTAGAACAACCATAGTAAATTAGAT 65923 46 100.0 30 .............................................. ATCTACTGCGAGGGTGTGCGTATCACGCTC 65999 46 100.0 30 .............................................. AACCTCGATTTTACCCAGTTCACACAAGTG 66075 46 100.0 30 .............................................. ACTTGGTGCAGACGAAAGAAATTCGAGCGG 66151 46 97.8 0 ...................................T.......... | ========== ====== ====== ====== ============================================== =============================== ================== 22 46 99.9 30 GCTGTGCGTTGCAACAAAAATACTAAATCTGAAAGCTATTCCCAGT # Left flank : ATGAGTCATTACAGATCCAGATATTCAGCCTATAGAAGTATGTGGGTAATGGTATTCTTCGATCTACCTACGGAAACTGCAGCCGACAGGAAACGTGCAGCAATCTTTCGGAAAAATCTGATTAAAGATGGTTTCGAGATGTTCCAATTTTCTATCTATATCAGACACTGTGCAAGTAGAGAGAATGCAGAAACACATTGCCGACGGGTCCGTTCTGCTATTCCTGAAAAGGGCAAAATAGGTTTGATGACAATCACAGACAAACAATTTTCAGCTATGGAGATCATTTGTGGGAAAGGAAGAGAGTATTATCAGCCACCCCTCCAGCTTGAACTTTTTTAAATATATTCTATCATCTTTTGTGGAATTAGTGCTTTTCGTCTGGGGCATAGAAATTAAAAAGCCGAGATTTCTCTCGGCTTTTCAGTTACGCACAGTTGTTTTTTTCTTACTCACAATCACCCTCTATGTCCTGTATTACAGGTGATTACGGGGATTCT # Right flank : TAGGCCAGCTGGGGTGTGACGGGGTATAACGTCTATGACTACGAAAAAGACGGGAAAACTTACAGAGTCGGGTTCGAGGTAATAGAGAAAGAGGCTGCGAGGTGGAAGCAGCCGTATTATGTAAAAAAGAAAAACTGATCAGGGTCAGTTACGTGCTAAAAAAATCGCCCGAATTCGCGTCCCTAATCAGCTTTCTGTACTGCAAATATAAACAAAGTTTCTGAAGCTGCGTTGCAACAACATTACTAAATCTGAAAGCTATTCCCTGTGAAAAAAGGGAGACCACGAAAATAATAATCTGCTCAAAAATCATGCGCCAAAAAAGTTTTCAACAACGAAGACGAGTTTGGAATGATTCCAAATAAGCATCCATGGAGAAGAAAAAAGCAAGGTAAAAGTGGAGGGAAAAGGAACTGCCACAGATCGAAATACCACTTAAAACAAGTGAGACAACGATCTGTATATAAAACATTTTCAATTTATATATAAATCGTTTTCGT # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCTGTGCGTTGCAACAAAAATACTAAATCTGAAAGCTATTCCCAGT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.87%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-1.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [61.7-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.68,0.37 Confidence: LOW] # Array family : NA // Array 1 361-923 **** Predicted by CRISPRDetect 2.4 *** >NZ_ASYN01000169.1 Porphyromonas gingivalis SJD5 contig76, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 361 36 100.0 31 .................................... CGCTCAAAACGACTCAAGAAAAACAAATGAG 428 36 100.0 30 .................................... TTAGTATGGTTTTTAGTTTAGAAAAGTTCC 494 36 100.0 30 .................................... TCAGACCAACAAAATCCTTCTTACGAGATT 560 36 100.0 30 .................................... TCCATGTACAAATATCCTTCAGACTGCACT 626 36 100.0 30 .................................... TCTCTTGTAGAAGCTGTCACGAAGATGACA 692 36 100.0 29 .................................... AGGCACAGAAAGATTCCGACGCAATTACG 757 36 100.0 29 .................................... GCACGGCGATCGGCTTTTGGACGCTATAA 822 36 100.0 30 .................................... GGCGAGAAAAGGATTCACCCTTGTCAAAAG 888 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 9 36 100.0 30 GTTGTGTGTACCCTTCGAATAGAGGGTAGATCCAAC # Left flank : ACCGAGTTCTTGCAGGAACTCGGTGGGTGCCTCATCTATTTCGAAGGGGTACGAAACGACTCTCAGGCTCTACCGCTCATACAGCAGGCTTGTATCAGCCATACGCGCGGCATATAACCACACAGGCCGAACGAAACCGGCCGAATAAGAATGCAGGAAAGAGAAGGATCGGAGCACATATCTATCATTCATTTAGTCGTTTACAAAGTCATTCCATAGAAAGGGAAAGCTCTCCCCGGTACAAATTCACCGAAGAGGGGAGCACCTCGTCCGCCTGCAAATGTAGCGAAAAAGCCCCAACGAGGAAGAATCCCCACACTACTGCACATTCCAACGCCCAAGCCACCAATCAAGAATCATG # Right flank : CCTACCCCCATCGAATTTGAAACCGATTGAGAAGTCATCATTCCACAGAAAGTGAGTGACGGTAAGGCTTTGGAGCCACTGCAAGCCGGCGAAAAACAGTCTGTCATCATCATTTTAGTGGGATATTAGGATTGAAAAAATGACTCTCGACAGTCGGGTTTATGCTATTTTCTCTCAAAAAATCATTCCTGTGCTCCTGGCGGTTCGCACTCAAAAGTTCAACGTTCGCTTCTTCAGTGCGATGGCTTCTCTAACGGTTTGGGTAAGCTCCTGATGAATACTGATCATCCGTTCGGCCGTTTCGGGCTTGTTCATCACAATCCTCTCATCCGAGTTCTGCCTCTCCGAAAGCAAAAGGCCGTAAACGATACTCCTATACTCAAAGATACGGGAAATAATCTCTTTAGACAAGAAAATACCGTTCCCATTCTTATAAAATTCGTCCGTCAGTTCGGACAGGAATCCACGGATGCAGGCCGGCCTGAAATAATAGGTTTTCG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGTGTACCCTTCGAATAGAGGGTAGATCCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-10.40,-7.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [50.0-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0 Confidence: MEDIUM] # Array family : NA //