Array 1 21815-22028 **** Predicted by CRISPRDetect 2.4 *** >NZ_CMXM01000022.1 Neisseria meningitidis strain NM1361, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================= =========================================== ================== 21815 25 100.0 43 ......................... CCAGACCGTGGGATAACGGCAATATTCAAAGTTTATAAAAGAC 21883 25 100.0 29 ......................... TTTTCCAATAAATGCCCCCAACCTAAAAT 21937 25 100.0 41 ......................... CTAGGCCTAGAACAACAGCAATATTCAAAGGTTATAAAAGA 22003 25 100.0 0 ......................... | T [22005] ========== ====== ====== ====== ========================= =========================================== ================== 4 25 100.0 38 CCGTCATTCCCGCGCAGGCGGGAAT # Left flank : AGCTTCAAGCTTGGGGCGAACGCAACAACGTAACCGTGATTTCGCAAACCACGGGCGATTCCGCCGCCGTGTGCTTCGATGCCGTCCAAGCCGCCAAAGCGCGCGGCATCGACATTGTGCTGGCCGACACCGCCGGCCGCCTGCCCACGCAGCTTCATTTGATGGAAGAAATCAAAAAAGTGAAACGCGTGCTGCAAAAAGCCATGCCCGACGCGCCGCACGAAATCATCGTCGTGCTTGATGCCAACATCGGGCAAAACGCCGTCAACCAAGTCAAAGCCTTTGACGACGCATTAGGGCTGACCGGTTTAATCGTGACCAAACTCGACGGCACGGCAAAAGGCGGCATCCTCGCCGCGCTTGCCTCCGACCGCCCCGTCCCCGTCCGCTATATCGGCGTGGGCGAAGGCATAGACGATTTGCGCCCGTTTGACGCGCGCGCGTTTGTGGACGCACTGCTGGATTGAGCCGAAATGCCGTCCGAAAACAGCAGACCGATG # Right flank : TCTAGAAACATCGGCACGGAAACTTATCGGGTAAACGGTTTCTTGAGATTCCGCGTCCTAGATTCCCACTTTCGTGGGAATGACGGGATGCAGGTTCGTGGGAATGACGAGTGGAAGTTACCCGAACTTAAAACAAGTGAAACCGAACGAACCGGATTCCCACTTTCGTGGGAATGACGAATTTTAGGTTTCTGTTTTGGTTTTTTGTCCTTGTAGGAATGATGAAATTTTAAGTTTTAGGAATTTACCGGAAAAAACAGAAAGCGTTATCCACAAGTTCTGATGTTCAGCTCGTGAAATGCGTCGGGCAAATCATCGCTGTCGGCAAATTCCACCCGGTCGTAAGCCGTTTCGTCTGCCAAAACCGCGCGCAAGAGTGCGTTGTTGATGGCGTGTCCCGATTTGTAGCCTTCAAACGCACCGATAATCGGGTGTCCGACGATATACAAATCGCCGATGGCATCAAGGATTTTGTGGCGCACAAACTCATCGGGATAGCG # Questionable array : NO Score: 2.86 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCGTCATTCCCGCGCAGGCGGGAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.30,-2.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.27 Confidence: MEDIUM] # Array family : NA // Array 1 424-1580 **** Predicted by CRISPRDetect 2.4 *** >NZ_CMXM01000039.1 Neisseria meningitidis strain NM1361, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 424 36 94.4 30 ........G...A....................... TTTTTGTATCCATTCCCAGCCGGAAATTAA 490 36 100.0 29 .................................... TCGGCCGCTTTATTTCTGCCATATCGACG 555 36 100.0 30 .................................... TACCCACGGCGGAAACCATTGCCACAAAAC 621 36 100.0 30 .................................... CTAAATAGAAATACATACGCCGAGTAATTA 687 36 100.0 30 .................................... TTGCGTCTATGGTGTCCTTTGAGATGTCCA 753 36 100.0 30 .................................... CTTTAACTTTGACCGTGTGCAATCCAGTTA 819 36 100.0 30 .................................... CATAACAACCATTTTGTTATTTCGATTTTT 885 36 100.0 30 .................................... CTGTTGATGACGGATGTGTCGGGTTGCGGA 951 36 100.0 30 .................................... CAAACCAACCGGGTATTCATACACAGCCAA 1017 36 100.0 30 .................................... CATAACAACCATTTTGTTATTTCGATTTTT 1083 36 100.0 30 .................................... TCCTGCCAATTATCATACATAAGATTTTGC 1149 36 100.0 30 .................................... CTTCTGCCTTTTTACAAGCTCGCTTTCTTT 1215 36 100.0 30 .................................... CTTATTCGTCGATGATGGAAACTCGAGCAT 1281 36 100.0 30 .................................... TTTGGTAAAGGTTTCTGTTGCGACCCGAAT 1347 36 100.0 30 .................................... CTGTTGATGACGGATGTGTCGGGTTGCGGA 1413 36 100.0 30 .................................... CATAACAACCATTTTGTTATTTCGATTTTT 1479 36 100.0 30 .................................... TTATGCCGTTTTCATCCGGCTTGAACATTT 1545 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 18 36 99.7 30 GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Left flank : TCCCTTTCTCATTTCGCAGTGCTACAATAACGGCAACCCACTAAATTTTGCAAATGCGGTTGTAGCTCCCTTTCTCACAGGGAACAGCAAAAATCCCCGCTGCAACGGGGATTTTTGTTCGGCTCTCGCCTGTGTGATTAACTTCACTAGGAGAAGCTAAAATGCTTAAATTCCTTATGCGTGGGAAAAAGTTGCTGCTGTCCGTTGAAGTGAACCACAAGTTCATTTTAGCGGTTGCTTTGCTGTTAAGTCAATGCAGTAGCTAACCCGACCACAATCAAAAAAACGCAAGTTTTCCGCCTACTCTGTGAGTGGGCGGTTTTTTCTTATTTCAAATCTGTGACACAATATCTGTCGCCTTTCTTGCCATAATTGCACTGTGTCTCAATGACTTTAACGCACGTTCGCTTATCGCAACGGCTGG # Right flank : TACTTCGACGGGAAATCCTTATTTCATAAGGGTTTCCCGTTTTATTTGTTATGAAAAAATGGGCTTAAAATAACAATAATTGGTCTGAATTGACCTTTTTTTCTTGGGTTTTCAGCTCGCCCAACAGCAGTTTCATGGCGGCATATTGCTTTTCTGTTATCTCCAAACAGCGGATTGAGCCTTCTTGCGGAAGGTTTGCACACAGTCTGTTGTGGTGTTTTTGCAACGAATCGCGGCCTTTGACGATACGGCTGTATACGGAAAGTTGCAGCATTTGGTATCCGTCTTTTAATAAAAACTGGCGGAATTGATTGGCGGCTTTGCGCTTTGCCGCCGTGATAACCGGTAGGTCGAAGAAGACGATAATCCTCATAAATTTGGCCTCACTCATATTGGTATTCTTTCAATGGTAGGATTTCAGGCAGTTTCAGTTGTTTGGCGTTTTTATCGGTTACGCCGGCTTGAAATGACGAAATCATTTTGTCGATGGCAGCCAAGGT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: F [matched GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.40,-0.90] Score: 0/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.68 Confidence: HIGH] # Array family : NA //