Array 1 16189-14899 **** Predicted by CRISPRDetect 2.4 *** >NZ_ANRC01000017.1 Neisseria meningitidis 97021 NM97021.contig.16, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 16188 36 97.2 30 ........G........................... GGACGGCGGTTCTAAAATATGAAAACTCAA 16122 36 100.0 30 .................................... CGATTTACCACCCATAAAACCACCTCAAAA 16056 36 100.0 30 .................................... CGATTTACCACCCATAAAACCACCTCAAAA 15990 36 100.0 30 .................................... TAATTTGCGTTTCGTGTCGCTCATAAACCC 15924 36 100.0 30 .................................... ACAAAGCCGCAAATCGTCCGCCGCGTATCA 15858 36 100.0 30 .................................... TTGCCGGATGAAGAGGTGGCGTTTGTTGCC 15792 36 100.0 30 .................................... TCAATGATAAAACTAAAGTTTAAACAGAAC 15726 36 100.0 30 .................................... ACTCCCTGTTTATCGGTTTTTCAGCTTAAA 15660 36 100.0 30 .................................... CTGAAGCCTCTCTTTTAACGCCATTTTTAT 15594 36 100.0 30 .................................... GTCAAGCATACTAAACGATTAATAGCTTAG 15528 36 100.0 30 .................................... CGATTTACCACCCATAAAACCACCTCAAAA 15462 36 100.0 30 .................................... TAATTTGCGTTTCGTGTCGCTCATAAACCC 15396 36 100.0 30 .................................... TCATAATTGTATAGGTAAATGTCATCAACA 15330 36 100.0 30 .................................... CTGATGAGTTCTCTACGCATGGGACGTAGG 15264 36 100.0 30 .................................... TGAAGTTGCGCCGATTGCACCAACTGATGC 15198 36 100.0 30 .................................... ATCCGTTTGAGGCTAACAAGCCAGCCACTA 15132 36 100.0 30 .................................... AAATTCGAGCAAAGATAGAAGCAACTTGTT 15066 36 100.0 30 .................................... TGAGTTGTAGTTGTAGCTAGCATCAATAGA 15000 36 100.0 30 .................................... AAATGACGATGCGGAACGATTCAGGCAGAG 14934 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 20 36 99.9 30 GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT # Left flank : GGAAGCGGTCGATGTGTTTGGCAATCATGGCTTGGGCGGTTTGCCGGAAGAAGGTGCTCATGAGAAATCCCCTAAATGTCTTGGTGGGAATTTAGGGGATTTTGGGGAATTTTGCAAAGGTCTCATTTTGCAAGATTTTAGTTTAATCATCAAACAGGGAACAGCAAAAATCCCCGCTGCAACGGGGATTTTTGTTCGGCTCTCGCCTGTGTGATTAACTTCACTAGGAGAAGCTAAAATGCTTAAATTCCTTATGCGTGGGAAAAAGTTGCTGCTGTCCGTTGAAGTGAACCACAAGTTCATTTTAGCGGTTGCTTTGCTGTTAAGTCAATGCAGTAGCTAACCCGACCACAATCAAAAAAACGCAAGTTTTCCGCCTACTCTGTGAGTGGGCGGTTTTTTCTTATTTCAAATCTGTGACACAATATCTGTCGCCTTTCTTGCCATAATTGCACTGTGTCTCAATGACTTTAACGCACGTTCGCTTATCGCAACGGCTG # Right flank : ACCCCAACGGGAAATCCTTATTCTATAAGGATTTCCCGTTTTATTTAGTCTGAAAAAATGGGCTTAAAATAACAATAATTGGTCTGAATTGACCTTTTTTTCTTGGGTTTTCAGCTCGCCCAACAGCAGTTTCATGGCGGCATATTGCTTTTCTGTTATCTCCAAACAGCGGATTGAGCCTTCTTGCGGAAGGTTTGCACATAGTCTATTGTGGTGTTTTTGCAACGAATCGCGGCCTTTGACGATACGGCTGTATACGGAAAGTTGCAGCATTTGGTATCCGTCTTTTAATAAAAACTGGCGGAATTGATTGGCGGCTTTGCGCTTTGCCGCCGTGATAACCGGTAGGTCGAAGAAGACGATAATCCTCATAAATTTGGCCTCACTCATATTGGTATGCTTTCAATGGTAGGATTTCAGGCAGTTTCAGTTGTTTGGCGTTTTTATCAGTTACGCCGGCTTGAAATGACGAAACCATTTTGTCGATGGCAGCCAAGGTG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: R [matched GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.90,-0.40] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [65.0-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.68,4.5 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //