Array 1 96984-95515 **** Predicted by CRISPRDetect 2.4 *** >NZ_LMPF01000024.1 Burkholderia sp. Leaf177 contig_7, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 96983 28 100.0 32 ............................ AGAGTAAAACGCGCGAACGTGATGCCCCGCTC 96923 28 100.0 32 ............................ AATATCCCGACGTGCCGAATCTCGGCGATATG 96863 28 100.0 32 ............................ TCGATACCCACGGCAGCGCCCTCACCAATAAA 96803 28 100.0 32 ............................ ACCTCTAGCAAGCTGACGCGCTCTTTCAACCG 96743 28 100.0 32 ............................ GTGCGAGCTTGCGGTAGTCCGCAGTCCAGCCG 96683 28 96.4 32 ..............G............. AGAGCATGTCGCGCTCGAAGAGCTTAAGCAAT 96623 28 100.0 32 ............................ CTGCACGAACGGCGTGCCGTCGATGCCGAGAC 96563 28 100.0 32 ............................ AATCTGCCTGGCACTCGCTGACCGCTACCAAG 96503 28 100.0 32 ............................ ACAACGCCGCGACCGCTTTTACGCAGATAGTC 96443 28 100.0 32 ............................ GTCCCCGGTGGACATTACGAGTATCGCTATGT 96383 28 100.0 33 ............................ AGTCGCGCAATGTCGCATTTTCATTTTTCAACT 96322 28 100.0 32 ............................ TACGGTCATCAGGTCGAGCGTGCAAGTGCATA 96262 28 100.0 32 ............................ GAGCGGCGGCCGCGCGTCTAAGCTGAAACTCG 96202 28 100.0 32 ............................ TCATCCACCGCCGCGCCCATCAGATCAACGAG 96142 28 100.0 32 ............................ AGGGACAGCTCGTTGGCCGTCGCATCGACGCG 96082 28 100.0 32 ............................ AACGCCAGTAGCTGCGCTCGGTACTGCACCTC 96022 28 100.0 31 ............................ TGGACCCCGCCTCGCGCAAGCAGCGCGGAGT 95963 28 100.0 32 ............................ ATGGTGGTGCTCCTATGCCTTTTGCAAATTCA 95903 28 100.0 32 ............................ TAAGCGCTGCCAGTGATACCCCATGATCTGAT 95843 28 100.0 32 ............................ GATCGCGGCTGCCGCGTCACTGCCACCGATGC 95783 28 100.0 32 ............................ GCGTGAAAAGCATCACGGCAGACGATCGCGCC 95723 28 100.0 32 ............................ AGTCGCTATTGCTGCCCCGTCGAATCTCTCGC 95663 28 100.0 33 ............................ CTGACCGCTTGTTCACCAGCTCCATGACAGCGA 95602 27 92.9 33 ................A......-.... AGTTTCGCGCAATCACCAACTCGACGCGCCCAA 95542 28 85.7 0 .........G...T.C......G..... | ========== ====== ====== ====== ============================ ================================= ================== 25 28 99.0 32 GTTCGCTGCCGCGCAGGCAGCTTAGAAA # Left flank : GGCAACTCTGTTGGGTTTGATGGCGCACTCCTGGCTGCAAGGCATGCGCGATCACGTGGCGGTGTCGGCAGTTGCGTTGATACCGGACGGTGCGACGTATCAGATCGTACAACGCCGTCAGTTCAAGACGAACGTCGAACGCATGCGCCGCCGCCGTATGCGGCGAAAGGACGAGAGCATTGAACAAGCGGCCGCGGCGATACCCGATAGCGTTGAGCGAACGCCGAATCTGCCTTATGTACAAATGCGAAGCGCTAGTACTGGAGAGTCGTTTTGCTTGTTCATCGATCAGGCGGTGGCGTTGGCCGGAGTGTCAGGGAAATTTAATGGTTATGGTCTGAGTCAAGGGGCGACCGTGCCGTGTTTCTAGACCCTTTTTTTGGATTGGGTCGATGTGGCAGATAAATCAACGAGTTGGCGTTGGGATGACGATTTGGGTGAATTCGAGCGCCAAGTATTTATTCTGTTTGGACTCAATTGCTTACAGTTGATTTGGTCTA # Right flank : TCGCTTACTGCGGTCAAAGGCGCGGCTGGCTCTTCTACTACCGCGCAGGCAGTTAAAACCGCAATATTCCGGCGTTCAGCAAGACTTTCTTATACTGCCTCCGGCCTCAAAAACCAAAAACGCCCGCTTTCGCGGGCGCTTGGCTATGGGCGTGGCCGCCCACCTAATTGTGCAACCAACCCTACCCTCAATGCTTCACATCAACCGCCGAAGGATCGCTCGAATACGTATAAGCGTAAGCATAATCATAAGTCCCCTTACGCCCACCACTCTTCGCCGGCATCGCATTCAACACCCCACCCACAATCCGCGCCCGCGCACGCTTAAGCTTCTTCAGTGCATCGGCGATATTCTTCTCCGAGTGAGCGCCCGAGCGCATGACGAGCACCGTCGATCCAGCCAGGCTCGCAATCACCGCAGCATCCGGAACAGCCAGCAACGGCGGCGTATCCACAATGACGAGATCGAATTGCTTCTCAAACGCCTGCAGCAACGAAGCA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCGCTGCCGCGCAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCGCTGCCGTGCAGGCAGCTTAGAAA with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [41.7-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 256734-257745 **** Predicted by CRISPRDetect 2.4 *** >NZ_LMPF01000020.1 Burkholderia sp. Leaf177 contig_3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ===================================== ================== 256734 31 100.0 34 ............................... TGCTTAGAAAGCTGTTTGATGATTCCGGTGTGTA 256799 31 100.0 34 ............................... GGCGTCACTGACCTTGTGATTGCCTACAAGGTAG 256864 31 100.0 33 ............................... CAGCGCCTTGCGCCTGGCAGATGGCGACAACTT 256928 31 100.0 36 ............................... CCGTGGCTAGTCGTCCACGTCGTAGCCTGCATCGCG 256995 31 100.0 35 ............................... GCAATTCAACGCTATGGGCGGACGATCCGAAGCAG 257061 31 100.0 37 ............................... AATGAAATGCTGGGGCTGGTCGCGCGTGCCGATCGCG 257129 31 100.0 35 ............................... TTGAGATAAAACAAATACGTAAATACCGGCTCTGC 257195 31 100.0 33 ............................... ATGCAACTGTGCCACTTGGCACGGGATGAAAAT 257259 31 100.0 33 ............................... GAGGTCGAGGCGATGCGCATCAAGTCGCTGGGT 257323 31 96.8 34 ....................G.......... CCTGAGCGCTACATCATTGGCGACGACGCGGCTC 257388 31 93.5 35 ....................GC......... TATTTCGACCAGCTTTTGAGCGCCAAATACGGCCC 257454 31 90.3 35 ..................T.G.........A TACATCGATGGGATTGAGTTTTTCAAAGGTGAGAC 257520 29 93.5 35 ..................-.-.......... GTGCAGGTCGCGACAAATAAACTGATGCAGACTGT 257584 31 93.5 35 ..................A.T.......... CAAGATCAAGCGGTCCGCGTAGAGGTAGCCGGAAT 257650 31 87.1 34 ....................T..G...GC.. GTAGGTCGTACTAAGTATCGGAACGCGGTTGACA 257715 31 83.9 0 .......TGC..........T..G....... | ========== ====== ====== ====== =============================== ===================================== ================== 16 31 96.2 35 GTCGCGCCCTCACGGGCGCGAGGATTGAAAC # Left flank : GATGCTCGTCCATTTGTGAACAAGCGACCAGGTGCGGAGGGATTGGGGGGTGAGCATGAGGCGGATTACGGTCGGTTCTTTGTTGGGGTTCGGGTGGGTAGGGGCGTTTGGATCGCTCGTTACGGCCGTTTAAATGAGAATGATTATTATATACATCTCTATGGTGTCCTTGCGATTCGCCTGCCTGGTTGGTAGCAGAATCACTGAGGTAACATCTTTCCGATCTACGGGGCGGATCTGCGATGTGGAGGCGCAGCAGGAACGTGAGTTAATGCCTTGCGGCCTACCGAAGATGTCGATTAAGACGGCAAGTGCGAACCGGTAGCGACCGGCTTTCTGTAGGTAGGTTCGCGCAACCACTTAGCAGCTTGATCTGTAACGTTTTTCAAGCGGAGGATTGCAACATGGCATTTTCTGGCGGTGCGAATGGATTGGTACTTGGTAGGTTCGCGGAAGACGCCAGATTTTTTGTTTTGGAACAGTGGGTTGAATGGGATGGT # Right flank : CATGCGCATCTAAGGCGTTGCGGTGTACCGCAATCAATCGCACTCTCACAAACTCGTAAGCCCAAAACCCACCCAAACTAAGCACCCATTCCAGCCGCGATCGGCCCCATCTCTTAAACAAGTCAAATTATTACCTTTCCAAATCAAATTCTAAGATGGCACCGATATTAAGCTCTTCTAATTGCAGGCTGCATTTCCACAAAGCGACGACCTAAGCTACGCGCTTCTAAGAATGAGAACGCCCGCCCACAATCCCCCAAGGCGGCGCCCGTGACACGAGTTTTCCACGCACACTCCACGTCGAACCCTGACGAGACCGACTGGCAAACGCTTCCGGATCATCTCAACGCAGTGGGAAAACTCGCGGGTCAATCGGCGCGACATTTTGGCGCCACCGTGCTCGCGGAAACGGCTGGAAAGTTGCACGATCTCGGCAAATACACTGACGCATATCAACAGCGCATCCGAGGCGGCCGTCGCGTGGACCACGCCACATGGGG # Questionable array : NO Score: 9.05 # Score Detail : 1:0, 2:3, 3:3, 4:0.81, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.98, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGCCCTCACGGGCGCGAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: F [6,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCGCCCTCACGGGCGCGTGGATTGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.20,-9.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-18] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [51.7-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 265861-268148 **** Predicted by CRISPRDetect 2.4 *** >NZ_LMPF01000020.1 Burkholderia sp. Leaf177 contig_3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 265861 32 96.9 35 ...........................T.... ATTTTAGCCAGCGCGTCTGATGTTTCTCCTGCATC 265928 32 96.9 34 ...........................T.... ATCGATGGTCATGCCGCGATAAAGACGCCACGCC 265994 32 96.9 33 ...........................T.... GGACGAACAGCGGCAGTTATCGGCATCGTATCG 266059 32 96.9 37 ...........................T.... GGCTTTGGCAATGAAGCGCTTGCGGGTGCGTTTGGGT 266128 32 96.9 33 ...........................T.... CAGCTTGTGCTGACGAAGGCATTGTTGTATTTC 266193 32 96.9 34 ...........................T.... TATGCGTGACTATCGCTATATGCGTAGCGACTTT 266259 32 100.0 33 ................................ CGAGCAGATCGGCTAGCCGGCGCGGTTGTGGGC 266324 32 100.0 36 ................................ GCCTTGCCGTCGTTGTGCGCCGGTGCGGGTGTAGTC 266392 32 100.0 34 ................................ ACGCATTTTGCGGTGACCCCGAAAAGAGTCGCCC 266458 32 100.0 32 ................................ TCGCAGATGTAGCCCAAGCAGAGAAGCGCGCC 266522 32 100.0 35 ................................ GATCCCTGCGTGAGCGTAGCGCGCGGGTAGCTTTG 266589 32 100.0 35 ................................ ATACACGCGGATATCGTCTTGCCACTGTTCGATGC 266656 32 100.0 35 ................................ GTCAGTCGCGGCATTGTGTTCATGCGGATTGTCGG 266723 32 100.0 35 ................................ CGGGGGGCGTCGAAAGTAGCAAGGCCAACGCCATT 266790 32 100.0 33 ................................ CTGCAAGGCGGTTGCTTCCTCGATCTGCGTAAG 266855 32 100.0 36 ................................ AGCATGATTTGGATTCCTTATTTCAGCAACTATGGG 266923 32 100.0 33 ................................ CTGCATATGAGATCGAGGTGCGGGCGATCCCAG 266988 32 100.0 33 ................................ GCGGATGCGTACACATGCGGCCGATATGTGCCG 267053 32 100.0 36 ................................ CATTTTGCGCGTGAGTTTTGGGAGCTTGATCTCGGT 267121 32 96.9 34 .....................A.......... GAAACGTGGGCGGCCGCAAACGGCGCGGCGGAAG 267187 32 100.0 33 ................................ CGCGCCCTCAATCCGTATGGGAGAACGACGAAG 267252 32 100.0 35 ................................ GGGCCTCGGTTCCATCTGCAGGCATGGCGGCGCTT 267319 32 100.0 35 ................................ GCTGGTCAAGATGCCGCCCACCGCATCCGAGATAC 267386 32 100.0 36 ................................ GGCGTTCAATCGCATTCAAACGCCGGTCCGTTTCCT 267454 32 100.0 34 ................................ GCATCTTGGACCGTCGCACAAGACAACCGCTATC 267520 32 96.9 37 ..............................C. GCGTGGTGGGTCAAGCCCTACCTGCAGTCGGTTGCGC 267589 32 100.0 37 ................................ TCGGTGCATTTCAAAAGTCCAACATGTGACGTTGGCG 267658 32 100.0 30 ................................ GGGGCAAGCGAATTGTTTATTACTCGCTGA 267720 32 100.0 34 ................................ ATATCCCGCGCCAACATCGGCGCTCAGGTTTCGC 267786 32 100.0 33 ................................ CTGCACGCCGGTACGTGCGATGACACATGGCAC 267851 32 96.9 34 ......................A......... ACGGTGTCGGGTAAACCCGTCGCAAAGGGGCGGC 267917 32 96.9 34 ..T............................. GCTATCGCACGGACGTGACAAATGGCATGCGCGC 267983 32 93.8 35 ........T.........A............. TTCACGGTTACATGCCCTAGTCAAATGCACAAATG 268050 32 100.0 35 ................................ AGGGCGACCGAACAGACTATTACAAGGTGCCGCAA 268117 32 71.9 0 .........C..C...T...A.AAGC.C.... | ========== ====== ====== ====== ================================ ===================================== ================== 35 32 98.1 34 GTCGCGCCCTTCGCGGGCGCGTGGATTGAAAC # Left flank : GGAAATGAGGAATCGCAATGATGGTGCTGGTGAGCTATGACGTGGCGACATCGACTGAAGGAGGCGCACGTCGGTTGCGCCGGGTTGCTCGCGCCTGCAAGGATTTTGGTCAGCGAGTTCAATATTCGGTGTTCGAGATTGAAGTCGATGCTGCTCAGTGGACGTTCCTGAAGCGCCGTTTGATCAGCGTGATCGATACCGAAGTTGACAGTTTGCGATTTTATTTTCTTGGGAATAACTGGGAGCGCCGGATTGAGCATGTCGGCGCGAAGGAGGCGGTGGATTTCAACGGGCCGTTGATTGTTTAAGGAGTTGCGAACGTGAAGTGGCCGGGGTTTTGTAGGGAGGTTCGCGGAAATGAAGACGCTTTGATTTTGTTGGGGATTTTTCGTTGAGTGGCGGGATTTCGTATGTTGGCCGGATTTTTTGTTTGTGACGCTGTGCCGTTCGCGGAAACGAAGGATTTTTGTCAGCCAATACAGTAAGTTAGGTGAGATGGC # Right flank : CCGCAACAATTGCCAGCCCAAACGCTCGCCTTCCCCAGAACCGTCAATCGCCCTCATTCAAACTGCCCCTCACCTCGCAAAAAGCCGCCCTCACCACAAACACCACCATCAAACCGCACTCTTCACAACAACAAGCCAACCCGCATGTACCATAGCTCCCATCGCTAACCGCCCTCACATCGAAACATTCTTTTAACAATCCTAACAATACCGCTCACCCGTGATCGAGCGCAAAATCAACCATCCATAAAAACGGACAGACTCATGCCGGCCCACCACGTTCTAATCTGCCTCCCCACTTACGGCGAAGAAGTTCACGTCAATTTTGCTTTCTCACTGCTCGACTTGACCCACGCGTTCACCAAAGCAGACGTGACCTACGAACTGTTGCACGTTGCGTCATCGCAAATCGTTCGGGCGCGCAACTTCTTCGCCAATTATTTCTTAAACAATCCTAAATTTACGCATCTGCTTTTCCTCGATACCGACATGAAGTTTCC # Questionable array : NO Score: 9.16 # Score Detail : 1:0, 2:3, 3:3, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGCCCTTCGCGGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [4,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCGCCCCTCGCGGGCGCGTGGATCGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.10,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-14] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [51.7-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.41,0.74 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //