Array 1 9497-10057 **** Predicted by CRISPRDetect 2.4 *** >NZ_QRUA01000011.1 Ruminococcus bromii strain AF25-7LB AF25-7LB.Scaf11, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 9497 36 100.0 30 .................................... GATGTTTTTGGTTAATAACTTAATCGTATG 9563 36 100.0 30 .................................... GCTACCGCTACTGTTTTATAGTTTGCGAAA 9629 36 100.0 29 .................................... ACTTTCGACAGTTCAATGTCATTTTGTTT 9694 36 100.0 29 .................................... TCTCCACGGTGGGCAAGTATCAGCACCCT 9759 36 100.0 30 .................................... ACCACAGGACTTGATTTCCGTCCCAAGGGT 9825 36 100.0 29 .................................... CACGCCCTGCCTTGTATGCCACTGCTAAA 9890 36 100.0 30 .................................... ACGGTAAGCCCGTTTTCGGTCGGTTCATAA 9956 36 100.0 30 .................................... CTGCCAAATGGTCGGCAGAGGAACAAGGCT 10022 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 9 36 100.0 30 GTTTGAGAATAGTGTAAATCTATAAGGTAGTAAAAC # Left flank : TTTTTTTGAAAATTTGTGTAATACAAAATATTTTCCGCAAATTTCAGAAATTAAAGCTTTATGTGTGAGCTTGTGTTGCGAGCTTTCTAAGGAAAATGATTATGATTTTCAGTTCTGCGAAAGTATCGAAACAATGGCATTAGTAAAATTGTTTTCATTTGCGCCTGCAGATGCCTCGGATGATAATGTCGGTCATCTTTTAAGATATTTCAAACTTATGAAAGAGTATCTTGGAATAAAGTGTTTTATTGTTCAAAATCTGCATATTTATCTTGATGACAGTGAATGTGAAAATCTTTTGGAATCCGCCGTTATGCACGGTATATATTTGCTTAACATTGAAAACTCAGTGCCGAAAGAAGTTTCTGAATACGAAAAACTTGTTGTGATTGATAATGATTTGTGTGAATTTTATTGACAATCATTATGCAAATGTTATAAAATATCCTTATAGATTTGCCGTGCACAGTATAGTGGGTGCATTTTATTTTCAATTTGAG # Right flank : TTCTTATAAGGTAGTAAAACTTCTTCAACTTGGTCTTTGGTGACACC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGAGAATAGTGTAAATCTATAAGGTAGTAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.22%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.60,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [66.7-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.27,0 Confidence: MEDIUM] # Array family : NA // Array 1 266990-267838 **** Predicted by CRISPRDetect 2.4 *** >NZ_QRUA01000003.1 Ruminococcus bromii strain AF25-7LB AF25-7LB.Scaf3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================ ================== 266990 36 100.0 26 .................................... TCACTCGGCATTATGGGCACAAGTGC 267052 36 100.0 27 .................................... GTATGGCATACACGCTCACTCCGTACT 267115 36 100.0 27 .................................... CCAATTTACATAAACATCTATGGTATC 267178 36 97.2 26 .............G...................... CTGACCTTGCAAATAGATTGACGGAT 267240 36 100.0 27 .................................... ACTCTAAAACTCTTTCTCAGGCTGTTG 267303 36 100.0 26 .................................... TGGCATTTGTTGCCGCATACACGCAA 267365 36 100.0 26 .................................... GCCGCCTGTTCATCGTCCTGTGCTCG 267427 36 100.0 26 .................................... GCATAGTTGTACGCTCTATCGTTTTT 267489 36 97.2 26 ........G........................... AAACGGGTATTGATAAATTAAAAGGA 267551 36 100.0 26 .................................... ACGCTGTTCGTTGTATTTTGCTTTCT 267613 36 100.0 27 .................................... ATAGAGCCATCGTATGCCAATATCTCA 267676 36 97.2 28 ...................A................ CCGTAATTATCGGACACAGAAGATTAGC 267740 36 100.0 28 .................................... ATTTCAGCGTTCTGCTTTTTGTTGTTTT 267804 35 91.7 0 ...........................-..T.T... | ========== ====== ====== ====== ==================================== ============================ ================== 14 36 98.8 27 GTTTAATAACCCTATATAATTTCTACTATTGTAGAT # Left flank : TTTACGACAGTTCAAAATATGATGAAAAGAGCAAGCTTCCGTGTGATGCCGATGCAAACGGTGCGTACAACATTGCCCGCAAAGGTTTGTGGATTGTTGAACAATTCAAAAAATCCGATAATGTTTCAACTGTCGGACCGGTAATCCACAATGACAAATGGCTGAAATTTGTTCAGGAGAATGATATGGCGAATAATTAAATTCCGACTCTTTAACACGGTACTGTCGTTAAATATCACTCCGACAGTACCGTTGTCAAGACTTGATATTTGACACAGATAATAAAAGAGTATATAATCTGACTAAGGATACATAGAAAAAGTTTGGTTTTGCCAAGAATGAAGATTCCCCTTTGCTGATAGTCGGCTAACTTCTGCAAACCCAAGTCTTAATATTTATTTTTGTCCATATGGGGTTATTGAACAATGAAAAAGTTATTACAATCTCACATATGTTATTTAAGTTATTTTGAAATTTATGTAACATCATACAACGTAAGG # Right flank : TTAGATAAAAAGGTTACTTACACCGATTAACAACAAATTCATTTTGCTACAAAAATACAAGCCACACACAAACAAAAGCAGAGAGTCCGAAAGCTCTCTGCTTTTTATCGTTTTTTAACATTGTACCGAACCATTACAACAAAGTTACCTACATAGCTATGGGAATTATCATAAACAGAAAAAGTCACGACTGCATATGCAATCGTGACCGAGTTGGTGGAGATGAGGGGAATCGAACCCCTGTCCGAAAAAATCTTGCCAAGGGTTTCTCCGAGCGCAGTTGGTGTTTTAAATCTCCCTCGGTGCATCGCCCATCAACAGGCTATGCACTTTGGCAGCTCCTAAGCTGTGACAGGGTTCGGAGCGCTCCCCTGTTCACATTTACCTCTAATCGACGCCCCTTACACAGCCGAGGTGCTCTGTGCAGGAACGAGCAGCACTCAGGCTGCTAAAGCAACTGTTTTGTTGTCAGTTAATTTTAAAGTTGCGGATTTTATGGC # Questionable array : NO Score: 3.04 # Score Detail : 1:0, 2:0, 3:0, 4:0.94, 5:0, 6:0.25, 7:-0.15, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTAATAACCCTATATAATTTCTACTATTGTAGAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:77.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [1-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA // Array 2 354536-353973 **** Predicted by CRISPRDetect 2.4 *** >NZ_QRUA01000003.1 Ruminococcus bromii strain AF25-7LB AF25-7LB.Scaf3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 354535 36 100.0 30 .................................... AAGTCATATTTTACAAACCTATCCAAACCC 354469 36 100.0 29 .................................... TTCTCAGCGTTCCGCCGACACAATAAGCC 354404 36 100.0 30 .................................... TGATAGTTTGAAAAGCCATTATTCTACTCC 354338 36 100.0 30 .................................... ACTCACGTACACACACTATACGGCACATGG 354272 36 100.0 30 .................................... CAGTGTTGAGCGGTACAAAGCAATGTATAA 354206 36 100.0 30 .................................... ATAAAGACGCGAATTATGGTTGAGCACATC 354140 36 100.0 30 .................................... AAGTCGTCTTATCCTGTGACTGAAACTGCA 354074 36 100.0 30 .................................... CGGTTCTTCGTAGGTATAGGCTTCCTGATC 354008 34 88.9 0 .......................T...--......T | C,A [353976,353987] ========== ====== ====== ====== ==================================== ============================== ================== 9 36 98.8 30 GTTTGAGAATAGTGTAAATCTATAAGGTAGTAAAAC # Left flank : AATCTATAAGGTAGTAAAACTACAAGAAATTCTATAAGGTAGTAAAACTACAAGAAATTCTATAGCAGACAATTCA # Right flank : TTTACTCGTGGACTGTGAAAAAACAGCATTGCAAAAAACAATATGGCACATAACCGTTATCACTTTCGGTTATGTGCCTTTTGTAGTTTAATAAGTTTGTTAAGAATACCACGATTGATTACAGTCCAAAACAAGGAAGATTTCAGTGCGTTAATTTCCAAAGTAAGTTCCACCATGAAAGTTACTTTGGGGATTAACTATTTACTTTTTTGTTTAAGTTTGCGGTAAATATGAATTGTATAATCCGTTTTATTGTGTTATTATGTAGTAAAATGATGTGCAACATTGGTGTTTTGAAAAAATTATGTTGCTGAAATTAAACTTGAAATAACTGACGGGTGGCATATGGTTCGCAAAGTTGACAAAACAAAGCTTCTGACTGTTGTCGGGATAATTATATTCCTGTTTGGAGGTGCGGTGAGAATTTTTTCTCATCTTACTTCCTCGGCGGATAATTATATTGAAAATTTTGATGTTATTATCTTTTCGGGGCTTATTAT # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGAGAATAGTGTAAATCTATAAGGTAGTAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.22%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,-0.60] Score: 0/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA //