Array 1 7996-7722 **** Predicted by CRISPRDetect 2.4 *** >NZ_WNWN01000026.1 Lactobacillus acetotolerans strain LA1 Scaffold_26, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 7995 29 100.0 32 ............................. TATTTAGCTGTGTTCTTAACTCAGTATTTTCT 7934 29 100.0 32 ............................. GTAATCGGGCACGTAACCACGTCAATCAGCAG 7873 29 100.0 32 ............................. CATGCTTTCAATAACATGTGATTGCGTCTTGC 7812 29 100.0 32 ............................. ATCAGTTTCCTCGTGTGATTTAAACGGATCCG 7751 29 100.0 0 ............................. | T [7724] ========== ====== ====== ====== ============================= ================================ ================== 5 29 100.0 32 GTATTCTCCACGTATGTGGAGGTGATCCT # Left flank : | # Right flank : ATGGGTGCTGGTCTTAAATTGATTGTTAATAAAAGCTTGCTTATAATATATTCTGACAGTTTTAACAATAATATGGTACTTATTTTGCAAAGCAGGAATATTAATAGCTTATTTACAGGAGAAATTTATGAAAGCTAAAAAAAGAAAGATATTGGCAATCGTGGCTGCTGCCTTGCTGATAGTTACTCCGATTGCTGGTATTTTTACAGCGCCAAATCAAGCGGTAGTCATAGCAGCTAGAAAAGGGCACGGCCGCTGGTCACATTCGCGCAGGTCAACAAGAAGGAGAAAGAAGACCAAAGCCCTGTTCACTATCGAATTTAACTATGACGATAGCGATGAAAATGGTCGCGTTTACAAAGCACCAGACAAGCATCCGGTAAAGTTATGGTACTCTGGTAAGATGTCAGTATATGCTCAGGCCCCAGGCAAAGATGGCTATATGTGGTACAAGATTGGCCGTAATCAATGGGTCAACTCTTACTACACCAACAAGCCCA # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCTCCACGTATGTGGAGGTGATCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.72%AT] # Reference repeat match prediction: R [matched GTATTCCCCACGTATGTGGGGGTGATCCT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.70,-9.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 640-1 **** Predicted by CRISPRDetect 2.4 *** >NZ_WNWN01000031.1 Lactobacillus acetotolerans strain LA1 Scaffold_31, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 639 29 100.0 32 ............................. TATAAAAAGGCACTTGTGAAGATACATCATTT 578 29 100.0 32 ............................. GTAGGGAAAATAAGTAAAAGAAAAATGAGGTA 517 29 100.0 32 ............................. ATTGGTATGGATTCAACCGGTGATCTACTTTT 456 29 100.0 32 ............................. ACTTCTTATTTATTTTCCCTACATTTATATAA 395 29 100.0 32 ............................. GTATAAAATAATAGTTGACTTATTAATTTAAG 334 29 100.0 32 ............................. ATATTGGAGGTACTGGTCAAGAAAAGCGTGAC 273 29 100.0 32 ............................. GAGTCTAGCACCAATAACACTGACGACAGACA 212 29 100.0 32 ............................. AAAGAGCTCATGAATGAAATCTATGAGAGTAA 151 29 100.0 32 ............................. AACAATGAATGAAGTGCAGTTTTTAGCAAACG 90 29 100.0 32 ............................. TATGATATTCATCACACCTTGCAAGCTGGCAA 29 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 11 29 100.0 32 GTATTCTCCACGTATGTGGAGGTGATCCT # Left flank : GTTGATGAAGATAAAATTTTGTCGATTGGAGCAATTAAGATTTATCATAATGTAGTTTCTAAATTCTACCGCGAAATTAAGGTGGATTGTCAAATTCCAAGTAGTATTTCAAGGTTGACGGGTCTTACAAATTCTATCTTAGATAAAAGTGGAGTTCGCTTAGATCAGGTTTTAAAAGAATTCATGAAATTTATTAAAGGACTTCCATTAGTAGGTTATAATGTCAATTTTGATATTGATTTTTTAGAAAAAGCTCTAAATGATGAATTGAGTCTAAGTATTAATAACCAAGTTATTGATCTAATGAGTCTAGTCAAGAAAAAAGAAAAATTTTTAAATGACTATAAGTTGAAGACTGTTTTACAGCATTACGGTATTAAAAATAAAAGACCACATGAGGCTCTGTCTGATGCAAGAGCAACTTATGAATTGGCTTTAAAACTGTTGAAAAATGGTGTTTTGCAATTTTGAGAAAGGCTTTGTATCAAGGATTTTTTAGT # Right flank : T # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCTCCACGTATGTGGAGGTGATCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.72%AT] # Reference repeat match prediction: R [matched GTATTCCCCACGTATGTGGGGGTGATCCT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.70,-9.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 10624-10108 **** Predicted by CRISPRDetect 2.4 *** >NZ_WNWN01000031.1 Lactobacillus acetotolerans strain LA1 Scaffold_31, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 10623 29 100.0 32 ............................. TCATCAGACTTTATCTTTAAATCCTTGATAGT 10562 29 100.0 32 ............................. ACATTTTTTAATAAAAAAAGCAAAAAAGTATT 10501 29 100.0 32 ............................. ATCCTTGATTTTATTGTGACGATTGGCTAAGA 10440 29 100.0 32 ............................. TAAAAAATACGATGAATTAACTAAAAAAGAAA 10379 29 100.0 32 ............................. ATTAACGGATTTAATTGTGCCAGCTTTAATTG 10318 29 100.0 32 ............................. ACCATCATCAACAATGCTATTAGCGTCATCAT 10257 29 100.0 32 ............................. TGCCTTTGATTGAATAGCCACAACAAACTACA 10196 29 100.0 32 ............................. CATGCAACGCTCGTGATTACCCGCCGATACAT 10135 28 82.8 0 ..........-...A....T......T.A | ========== ====== ====== ====== ============================= ================================ ================== 9 29 98.1 32 GTATTCTCCACGTATGTGGAGGTGATCCT # Left flank : TCAAACCAATCATACGAGAAAGGAACTCCTTTTTCTAATGTTTTAGGAAATTAAATTAAGGAATAATTCATCCTTACACAAAATATTTTACGGTCTCATAAAAACATTTTGAATTATAATTAAAAATAAAACTATTGAAAAAATGAGTTTTTGATTTTTACAAAAGCCGGTATTATGGGATCTTTTTAG # Right flank : AATAAATTAGCTAGATGCCTCAAATGAGGCATCTTTTTTGTTAGAAGGATTTTCTATGTAAGCGTTAAATGATAAAATAATAGGAGAGATTATAAAATGAAAAGAGAAAATAATGAGTTCTTTATCAAAAGCGGCTAAAAGTTTATGGGGCAAAAAGGCTATTAAAAATGGGCAAGAGCTTTGGCTGCCATTAATTGCTCACTTAATTGATACTAAAAATGTAATAAATTGGCTCTATAACCATTGGCTAAGTGATAAGGAACAACTAATTATTGAATCTTCTCTTCCAAATCAGAATATTCATGCTTTAGTAAAATTTCTTGGGTGTGTCCACGATTATGGTAAATGCATTCCTGCTTTTCAGGGAAAGCCTTCATATCAAAGATCTAAAGTTCTAGATCAGGATTTGCTAGAAAGATTGCTGCGACAAGGCTTAAGTAGCATTAAGTTAGTGTCGATGGAAAAATCACCTCATGCGGTAGCAGGGGAAGCTTTACTCG # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCTCCACGTATGTGGAGGTGATCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.72%AT] # Reference repeat match prediction: R [matched GTATTCCCCACGTATGTGGGGGTGATCCT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.70,-9.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 317-535 **** Predicted by CRISPRDetect 2.4 *** >NZ_WNWN01000034.1 Lactobacillus acetotolerans strain LA1 Scaffold_34, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 317 36 100.0 15 .................................... TGTCATCTTTGCCAA Deletion [368] 368 36 97.2 30 ..............C..................... ATCGCAATATGATTTGAAGCGTTCTTTTGA 434 36 94.4 30 ...................T.......T........ GTATGAATCATCATTTGCTGTTCGGAATAA 500 36 86.1 0 ......T............T....A.A........A | ========== ====== ====== ====== ==================================== ============================== ================== 4 36 94.4 25 GTTTTAGATGATTGTTAGAACAATGAGGTTTAGAAC # Left flank : AAAAGGCGCAACCCCAAATGCATATTGGGATTCCGCCTTAAAGAAAATTGTGTAAATTTGTAATAAACTAACGTCCAGTTTTAGGGGTTAGCTTCAAAGGGAAAGATCTATTTACACATAAAATTTGACAGTTTCCATCTATTTTGTTTATAAAAATTGATAAATACCTAGATTTCAAATACATTTGTACTATATAATTTAAATAGTAATGGTTATAGCTTAACGATTATTTATAGTTAGTTGCTTGTTCTTAAGAAATTTCATTAACCTTATTTGATTGTGACAATTTTTATTAAAAATTAATGATAAAATATCGG # Right flank : AAGCTTATGTAATCATATATAATATGGAGCTTTAGATGCTTGTTAATTGTAAAATTATAAATTTATCGGAGAAAATTTGATTTGTTGCGTTAAAATACAATTATATTTGTCTGTAAGCGTTTTAAATATGTAAGAGGGGGAAATTATGACTAAAGTAAACAAAGATTATATAGTAGGTTTAGATATTGGTACTGATTCGTGCGGGTGGGTAGCTACTGATAAAAAGAACAATATCTTGAAACTACAAGGTAAAACTGCTATAGGTTCACGTTTATTTGAAGAAGGACATTCTGCTGCTGATCGTCGTACTTTCAGAGGTACGCGTCGTAGACTTAATAGAAGAAAATGGCGCTTAAAGTTTTTAGAGGAAATTTTTGATCCATATATGACTAAAGTTGATCCATATTTTTTTGCACGTTTAAGAGAATCTGGATTATCACCCAAAGATTCCACCAAAAATACTCAGGCAATAATTTTTCCTACTCCAAAGGATGATAGTG # Questionable array : NO Score: 3.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.72, 5:-1.5, 6:0.25, 7:-0.64, 8:0.6, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGATGATTGTTAGAACAATGAGGTTTAGAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: F [matched GTTTTAGATGATTGTTAGATCAATGAGGTTTAGATC with 98% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.60,-1.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [83.3-78.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 2 6960-9107 **** Predicted by CRISPRDetect 2.4 *** >NZ_WNWN01000034.1 Lactobacillus acetotolerans strain LA1 Scaffold_34, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 6960 36 100.0 30 .................................... CTGGCAGGCCAAGACTGGAATCGAATCACA 7026 36 100.0 30 .................................... CTTATCTATATGTGTTAATATATAGTCGTA 7092 36 100.0 30 .................................... TTGCACCAACGTGTTGTTCAGCCACAGCGT 7158 36 100.0 30 .................................... TAGATAAAAGAAATGTTGAATACACAAAAC 7224 36 100.0 30 .................................... GTAAGAGCTGGATGGAAGAATATAAAGTTG 7290 36 100.0 30 .................................... TCGTAAACATTATGCAACTTGCCTACGAGC 7356 36 100.0 30 .................................... GGACTTGGGTGAATAATGCTTTACATATTA 7422 36 100.0 30 .................................... CTGAAAGTGAAGCAGGTTCACCTTCTGAAA 7488 36 100.0 30 .................................... ACATTCACTGAGAAGGATACAAGAATGACA 7554 36 100.0 30 .................................... AAATTCGCCTTCCATTTCGTCAAACTCATA 7620 36 100.0 30 .................................... TCATTAATGCTCTTGGCATTGAGCCAGTAG 7686 36 100.0 30 .................................... TGTATGTTAAGTATGATAAATACAATTTAT 7752 36 100.0 30 .................................... GCATGGGTTTAATTACTCAAGATGAATACC 7818 36 100.0 30 .................................... CCGATGATATTATCGTTGGCCAATCTATCC 7884 36 100.0 30 .................................... AAATGCCAAGTTCATACAAAGCCACCGCAG 7950 36 100.0 30 .................................... TTATCAAAGCGCTTAAAGACCCGATGCTAT 8016 36 100.0 30 .................................... CAAAGCATGAATAGCAGTTTGAACATCATC 8082 36 100.0 30 .................................... TTCCATGCAGGTGCTAAGCTAGGTGGGTAG 8148 36 100.0 30 .................................... AAGAGGCAGTTCGTAAGCATATTCACGACC 8214 36 100.0 30 .................................... TTAAAACCTTGTCGCCTGCCATCGCAATTA 8280 36 100.0 30 .................................... TTGCCTTTGGATTTAGTCCGCCAGTTATCT 8346 36 100.0 30 .................................... GATCCTTGGGGAGAAGATGCAACAGCTGAT 8412 36 100.0 30 .................................... CCACGTGGATGAATGCTGAAACAGCTGTTA 8478 36 100.0 30 .................................... ATTTGACGAAGATTATAGAGAGTTAGGTGG 8544 36 100.0 30 .................................... TTCGTCTTCAAGAGATTTCTTATTGTGGCA 8610 36 100.0 30 .................................... CAGTTACTTGAGAACCTTCAGGTAATACAC 8676 36 100.0 30 .................................... CTCCAGACGCTTTGACAAGCACTGAATTGC 8742 36 100.0 30 .................................... ACGTACTCAACAGCAGTGCCAGTGATTATA 8808 36 100.0 30 .................................... TATAGCCTCGATATGAGCTAAGGCCAATAT 8874 36 100.0 30 .................................... TGGAACAGCTTGAATTGAGCTGAACCATGG 8940 36 100.0 30 .................................... TAACCTTTGCGATGTATGCGCATCGAAGTT 9006 36 97.2 30 ..................................A. GTATCAAAGCTACGCTTGACACTCGTTACG 9072 36 83.3 0 ..................T....G.GCT......A. | ========== ====== ====== ====== ==================================== ============================== ================== 33 36 99.4 30 GTTTTAGATGATTGTTAGATCAATGAGGTTTAGACC # Left flank : AGCGGAGATATTATGACAAAATATATGTGTCATATAATTAAAAGTTATGTGACTAATTTAGATGAAAAAAATCGCAATAAAATACTCACTGCTTTTCATAATTTAGAATCTACATTACAAGATTCTCTTTTATTGGAGGATTTGCCTTTAGAAATTAATTTTGATGAAGATTTGAAAAAATTATTGAAAATGGTTGGATTACATTTAGATCATAAAATGTTATTAGAGCCATATGATATAATTGAAATGGTTTTAAAAGTACTTGAAATATGTAATTTAAAAACCATTCCTGTGATGTGTAATGTCGCTAATTACTTAGATTCACAGCAATTGAATGAGCTTTCTAAACTTGTTAGACAGATGAATTTGATATTGGTTTTAATAGAATTCACAGATTCAAATTTTAAGTTTATTCCTGAAAATGCGCAATTTTATTATATAGATGAGGACCTTGTTGATTGGTATTAACAGCATTATTAAAATTAGATGATAAAATATCG # Right flank : CGTACGTAGCAAAACCAATATGGCGGACTTAATTTTAGATATCTGTTAGATCAAAAAAGGCGATTTTAATTAATCGCCTTTTTCTTACGCTTTCTTTTAAAATTCTTAACTTTTCTTTTAAAATTCGTTTTACTGACTGGTCAATTTGCTTTTCTGATATCTCTTTATTTTTAACTGCTTGTTAATTGCTGGAATTCTGTTTTTGTAATTTCCTCCTAAAAGTAAATAATTACCTGCTTTTAGAGCTAAAATATCAGCGTTTGTGTGGTGTAATTTAGTATATTGTGTAATTGCACCCATTTGAAGATCATCAGAAATAATTAAGCCATTGTAATCCAATCTTCTACGTAAAAGTTTATGAACTGTAGATGAAAGGGATGCAGGTAGCTTAGGATCTAGACTTTTAATAATAATGTGTGAGACCATGATTCCATCTGCACCAGCTTCAATCCCAGTTTTAAAGGGCAACAGATCTTCGTGTTCATAATCTTTAAGAGATT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGATGATTGTTAGATCAATGAGGTTTAGACC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: F [matched GTTTTAGATGATTGTTAGATCAATGAGGTTTAGATC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-2.50,-0.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //