Array 1 550991-553275 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP019797.1 Rhodothermus marinus strain AA3-38 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 550991 28 100.0 33 ............................ CGCCTTCCTCCACCCCGTTGACGAGCGCCTCGG 551052 28 96.4 33 ...........................T TCGGTTCGGCTATCACTTCAGCTGACAAGCGGG 551113 28 100.0 33 ............................ TCCCGGTAACCGCCGCGATAGTAACGCTTCCTG 551174 28 100.0 33 ............................ GTGAGCCGCCAGGGCGAAGTGCCCTGGCGCTTG 551235 28 100.0 33 ............................ TGCTCGGCCGGATGCGGAACGACAACGGGCGGG 551296 28 100.0 33 ............................ TTCTCACTTGTGATCACCGACGTTTTGCCGGGG 551357 28 96.4 33 ...........................T ATCCCCGCTGTCGGCGCGCAATTCATCTGAGTG 551418 28 100.0 33 ............................ TGCGCCGCCGGTGGTCGATCGGAGACGGCCAGG 551479 28 100.0 33 ............................ TCATCTTTCACGGCCGGTTGCGGATCGGCCGGG 551540 28 100.0 33 ............................ GGCACGGAGATCACGCAGACGTCCACCAAGCTG 551601 28 100.0 33 ............................ AAAGCCACTGGCTCGCTCTGGGTGACGATCCAG 551662 28 100.0 33 ............................ TTAGTCCGAATCTAAATAACCGTTGCGGAAATG 551723 28 100.0 33 ............................ TTGTCGAGCGGATCGGTCTCAACGTAGGTGGCG 551784 28 100.0 33 ............................ CGCCGTCTCACCGGCGACGATGCGCCGGGCCGG 551845 28 100.0 33 ............................ CGGCGGCGCGGGTGATCCACTGCTCCCCCGGAG 551906 28 100.0 33 ............................ TTGAGTTTCACCGCCGACTCTTTCCGTTCGGCG 551967 28 100.0 33 ............................ AACCCGGCCGCGTCACTCGGAAGGGCGCGGAAG 552028 28 100.0 33 ............................ CAAGTGCTTTCCGCCGGAAGTGTTGGGGCGGCG 552089 28 96.4 33 ...........................T TGTGATGTTGTTCCGCCCAAGCCGCTGCAGCCG 552150 28 100.0 33 ............................ AAACGGTGGCAAGAGTATTGCACCGGAGAGGAG 552211 28 100.0 33 ............................ AAAACGGAGGCGGAACCGTGAAGGTCGTAGCAG 552272 28 96.4 33 ...........................T CTCACCAGCACAAGGAGTGATGCCGTCTGAAAG 552333 28 96.4 33 ...........................T TTTTGCGGGTGACGGCACCGCCTACGATATTGG 552394 28 96.4 33 ...........................T TCACAAAATCTTTACACGTCCGTGCGGGTCCCG 552455 28 100.0 33 ............................ AACCCGGCCGCGTCACTCGGAAGGGCGCGGAAG 552516 28 100.0 33 ............................ CAAGTGCTTTCCGCCGGAAGTGTTGGGGCGGCG 552577 28 96.4 33 ...........................T TGTGATGTTGTTCCGCCCAAGCCGCTGCAGCCG 552638 28 100.0 33 ............................ AAACGGTGGCAAGAGTATTGCACCGGAGAGGAG 552699 28 100.0 33 ............................ AAAACGGAGGCGGAACCGTGAAGGTCGTAGCAG 552760 28 100.0 33 ............................ CTGACCGTGCCCCTGGACCGAGAGGACTACGAG 552821 28 100.0 33 ............................ CGATCTGGCTCCGGCGCCCGAGCGGCTTCAAGG 552882 28 100.0 33 ............................ TTCCCGCGCTTCCTACCACAGGCTTCGTCACGG 552943 28 96.4 33 ...........................T CAGAGCCATCTTCGCCTACTGTTTTGTTGGTGG 553004 28 100.0 33 ............................ AAGCAGGCTGTTTACAGGCAATACTTGAAGGCG 553065 28 96.4 33 ...........................T CATTCAGGATATCATAAAATCCACCTATGACTG 553126 28 96.4 33 ...........................T TACCTTCAATCGGCACCCTTCTTTTGGACGCCG 553187 28 100.0 33 ............................ TTTCTGGAGCACGACGAGCTGCTCGGCGAGCGG 553248 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 38 28 99.1 33 GTGTCCCCGCACCCGCGGGGATAGTCCC # Left flank : TACATCAAGGAACTGATCGATGGCCATGACGATCGCCGTGACCCGTAACACGCCTGGCCGCTTTCGGGGCTTTCTGGCTTCCTGCATGCTGGAAATAGCACCGGGCGTGTATGTGGCGCCCCGGATGCCCCGGGATGTGCGTGAGCGGGTCTGGCAGGTCCTGCTGTCCTGGGCCGAGTTGATTCCGCCAGATGGGGGTGTGGTGCTGCTCTGGCGCAATCGCAAAGCGCCTTCTGGTCTGGATATGCGGCTATTGGGCTGGCCCAAAAAGGAGCTGGTGGAGTACGAAGGATTGTGGCTGGCGTGGCGTGGGTTGACGGCGGCGCACGACGTGGAGGAGCTTGCTCGACTGGTGGAGGCCGAGGAGCCGCCGCTTGAGGCGGGAGATCCGATCCTGCGGCTGGTGGAAAGACCGGACCTGGACGAAGAGGAGGGATCGTCTCTCTAATCAATCCTTAATTGTCCTTTTTTTGCCGCGGTTATGCCATAATGGCATAGAG # Right flank : CGACGGAGGAGTATGAAGAGCGCCGACGTGTGCTGGAGCGGGATCGTCAGGGATTCTGACGTTGGGCGCGCCGTTCAACCAGCATGCCGACGAGCGGAGGCACCCAGCAGAGGTTGGCCGCAATGGTCTCCAGTGCGGTATACACCTGTGTTGTGGGACTGAAGCCCAGCAGGCGTGCGCCCAGCAGACCTACGGGCACCAGGAGAATCACCAGGAGACTGGAGAGCATGACAGGATGGGTAAAGTAGGTGCTCAGGGTCTCTCTGGTAGAACCCGTACGTCGCCGTAGATACACGAAGCCGGCAATGTTGGCACCAAGCTGATCGCTCATGGCATAGAAAAAAGGAATGTAAAACCCCTCAACGCCATATACATCTATCCCTGCCGCACGACTTCCCCAGTCAATGATCCAGGGTACGACCATGCCTATCGCTTTGCCCCATCCATAGGCCTGCGCCATGGAGAAGGCCTGCTGTTGCAGGCGTTTCTTCAGGGCAAAG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTCCCCGCACCCGCGGGGATAGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCACCCGCGGGGATGGTCCC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [61.7-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 569102-570898 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP019797.1 Rhodothermus marinus strain AA3-38 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 569102 28 100.0 33 ............................ GCAGTAGTCGGCTGGCGGGAGTGTCTTAAGGAG 569163 28 100.0 33 ............................ CTCCGGATGAGATTTTTCGCCTATGCGTAGCGG 569224 28 100.0 33 ............................ CGCTTCAAGCCCGACTTCGTGGGCGACGTGAAG 569285 28 100.0 33 ............................ GACCGTCTCCCCATCCTGCTGGGCCTTGTCGAG 569346 28 96.4 33 ...........................T TCGATCTCCTGGTCGCCGATCCGGATGACCTGG 569407 28 96.4 33 ...........................T TGCGCTTTGACGGACTCGGCCACCTGCACCAGG 569468 28 100.0 33 ............................ GTCACGAAGAAAGGCTCAGGAAGCAGGTCCTGG 569529 28 92.9 33 ...C.......................T TCGAATGGTGTGGTGTATAGGTACTTAGACGCG 569590 28 96.4 33 ...C........................ TATGATCGACTTATGAAAAAGTTGAACATTCGG 569651 28 96.4 33 ...C........................ TGTTGATTACGTCCGCTTCGTAAACATCGCGCG 569712 28 96.4 33 ...C........................ AGCACCCGCTCGGTCGATCCGTCCGGGCCGCCG 569773 28 96.4 33 ...C........................ GTGATCGTGCGCTCAGCCATTCTCTTGCCGCAG 569834 28 96.4 33 ...C........................ TTCCTGCGTTTCCTACTACAGGCTTCGTCACGG 569895 28 96.4 33 ...........................T TCCTCGATCGGCACGGCCTCGACGCTGCGGTCG 569956 28 100.0 33 ............................ AACAGGTGCGTCGGGGCATGTGCGCACAAAAAG 570017 28 96.4 33 ...........................G CAAAGAGATATGTCAACTGGCGTATCGGGGGAG 570078 28 100.0 33 ............................ TGGATTGCACAATCGGTGCAAACTGGATTGCAG 570139 28 100.0 33 ............................ GATTCAGGATGCGTCATCAGGTAGAGGATGTCG 570200 28 100.0 33 ............................ TTGGTGAAGACGCGGCGCACCAGCCCAAAGCCG 570261 28 100.0 33 ............................ GTTTGAAGTTGTGATATCGGGGTAGTAGAGATG 570322 28 96.4 33 ...........................T GCGCTGGACATAAAAAACGGAACGCTGGACGTG 570383 28 100.0 33 ............................ TGCTGGAGGTCTGATGCTGAGCGGCTACCGTCG 570444 28 89.3 33 ...C........A..............T CTGCACCAGGTCGCGCATTTCATCGTCGATGCG 570505 28 92.9 33 ...C........A............... ACGAAGTCATCAGGCACCACCGGCACCCGGTTG 570566 28 96.4 33 ...........................T CTTCCGGAAGGTTGAACAGCAGAACGCGCGCCG 570627 28 100.0 33 ............................ CTTTAAAGGTTGTGGCGTTTGGTTTCGTGTGCG 570688 28 100.0 33 ............................ GGTTTGAAAGGCTTGGGCGCGAAGTCGGCCAGG 570749 28 96.4 33 ...........................T TCTATCGAGTCGGGATCGATGATGCCCCGCCAG 570810 28 100.0 33 ............................ CAAACCAACAGAGCCATGAGATCGTCTCTCACG 570871 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 30 28 97.7 33 GTGTCCCCGCACCCGCGGGGATAGTCCC # Left flank : TGCACATGATGCAGATGCACGGCGGCATGATGGGGATGGGCATGATGATGGGCGGAGGCATGGGTGGCATGATGCAGGGCGGTATGAGGCATGGACAGATGCCCATGCAACGGCAGCATTGATGTTACCGGGTGCCAGAAGCATACGCTACCTCCGACTGGCTGGCACAGGGAAGCATGCCAGGAGGTGATCCCCAGCATGGGATCGCCTCCTCGGTGCTTCCTGGATTTCGGTGATGCACAAACATAGGAGGCAACCATGTATAACGGATGCTGTGACTGGATGTGGGGATGGGGCGGTGGCTGGTGGATGATGATCTTCTGGGTCCTGTTCTGGATAGCCATCATTGTGCTGGTTATCTACCTCATCCGCCAGCTGGGCAGCCGGCCTTCTGCCCATCCGCCAAAAAGCGCTCCACTTTCCCCGCTGGAGGTACTTCAGCTCCGGTATGCCCGCGGGGAGATCTCCACAGAGGAGTACGAAGAACGCAGGCGCATACG # Right flank : CGCGGTCGATGCGGAAAAACCTCGAGACTGGCGTCGCATCGGTCGCAAATACAGAAAAAGGCTGCTGCACATAAAGCAGCAGCCTAATAGGTGACCCGGGCCAAGCACCGCGCTGCCCTCCCGGGTACGCCGCGCGCTTCGACGGGCGCGACCTCCACGCGCGACGACATGGTCTTACAAGAAGTAGCTTGACAACGGTTCCATGTCTGTACGGATCATCGCCCATCTGGACGACAAAGCCTTCCAGGCGTCGGTTCGAGAGCTGCACCGGCGCGTGCGTAACCTGCGTTCGCGGTGCCTCGCATACGCGGGGATCGTTCCGTCGAAAGGATGCCGCCGGATCGGCCGCGACTTGCAGAGAAAAGGGCTGCTGCACGTAGGGCAGCAGCCCGGAGCGTAATCCAGACGAAGCGCCGCGCCGCTTCCGGATACCCCGCGGGTTCATCGGGCGCGGCCTCCCCCGCAGGGCTACACATTACAGGTGACTGCCCGCAGAAGGT # Questionable array : NO Score: 5.91 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.76, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTCCCCGCACCCGCGGGGATAGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCACCCGCGGGGATGGTCCC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [38.3-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 1674348-1675985 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP019797.1 Rhodothermus marinus strain AA3-38 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================== ================== 1674348 30 100.0 36 .............................. CAAAACCGATATCAAAGTTTTCACGGAGGTTGTTGG 1674414 30 100.0 37 .............................. ATCAGGAAGTTCGTCTACAATCTCATAGTTTCCGGAT 1674481 30 100.0 37 .............................. CGATTTCTCCGTTCACGTCAATGAGCATTGAATAAAA 1674548 30 100.0 38 .............................. TCTGGATGGAAGGTGAGAAAGCCTATAAGCGGCTTCCG 1674616 30 100.0 36 .............................. TCGCGTCGGTGCCGATGCGCCGAGCGCCGAGGTGCC 1674682 30 100.0 38 .............................. AGCGCCAGGTTCGGATCGCAGTAGATCACGCCGCGCGC 1674750 30 100.0 38 .............................. ACGTGGCCGTCGAAGCCAAGCGCCAGGACGCGCCGGTC 1674818 30 100.0 38 .............................. TGCGATGCACGCGACGGACGCACAGCAGGCGGATGCCC 1674886 30 100.0 37 .............................. ATCGTCTTTTCCGTGGAGGCGGACGCCGATCAGGCGA 1674953 30 100.0 38 .............................. TCACGCCTTCGCCGCGTCATGGAGCCTCCTGCGCGCGG 1675021 30 100.0 35 .............................. GACGCAGACGGCTCAGGCTCTTCGCCTTCCGCCTG 1675086 30 100.0 40 .............................. AATGGTAGCCTTTCCGGAAAAGCCATACTCCGTCCACCCG 1675156 30 100.0 37 .............................. TTCAACCTGGTGGTAATATCGGACGGTCTTAAGTAGA 1675223 30 100.0 36 .............................. TGCGAAGCACGGCGGCAATGACGCCACTCGCCACAT 1675289 30 100.0 36 .............................. ACGAAGGTCAGATGCGCCTCGTCGGCGCTCGAGAAC 1675355 30 100.0 37 .............................. TAGTAGAAGGAGAGCGGGCCGCTGGCCCCGCGCTTGA 1675422 30 100.0 37 .............................. GCTACGGCCACATGGTTCGGCCCCACGAGCAGTTTAC 1675489 30 100.0 36 .............................. AGCGCAAACGGTCCGCGCGCCGCCGTGCGCGCGCAG 1675555 30 100.0 37 .............................. ACGCCTATGCCAGGGATGCTGGCTACGAGAGCTTTGG 1675622 30 100.0 37 .............................. CGCTTGATCCGTTCGCGAATGCGCTTACGGGTAGCTT 1675689 30 100.0 37 .............................. TGGAAGATAAAGGCGGCCACCAGCGAGCGTTTTTCGG 1675756 30 100.0 37 .............................. CGTAGAAAACGTCCGTGTCGACGTCTTCCAGCGATTC 1675823 30 100.0 37 .............................. CCGAGCCGGCCAGAGCGTGCCGTGCTCCAGCCGCTCA 1675890 30 100.0 36 .............................. CCGGTCTTCGGATGGACCTGGCGGTAGCTCCGCCAG 1675956 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ======================================== ================== 25 30 100.0 37 GTTTGTAGCCTACCTATGAGGGATTGAAAT # Left flank : AGAGTAGTTATGCGACCAGGGCTACCTTTAGTGCTTTCAACTGCTTTGCAGCGAGATTCTCTCCTTCCCGCTGTTGCAACAACAGTAGAAAACACGCTGCCGAGCGGCGATGATCCTGCATGAGCTGTCCCTTCTCATTATTCCGCGTTGGTGGCAAATCGTTTGCCATGGTCAAAGCGTTTGTTCCGACAATCATAAATATGCCCATCGTAACTCTGAAATCGATATTGCTATTTTCTTTTCGCCCCAAAGGATCGGCATACACCTCCAACACCACTTCGACCCGAACTTGCCGCTTTCATTTTAGAACTCCGAGCACTGTCAATAGGGGGTAATGCTGCCAGAATTGGTGTCGTCGATGTAGAATAGCGTTGTAGCCTCCAGCGATCGACGACATAAAACGAAGTAAAAGACCCTTTCCGGGAAACAAAAAGGCCTGTTTTGTTCTATGATTGAATGGATCGGATCAGAAATGTTGCTGAAATACATAGTTTGCTTGG # Right flank : TACATGTACCTGCGCGGAATATCGGTTACGGAGATCGTTTGTAGAACTTATCCGGAAAATAGGGATACTCTGTAATCGCCACGATAATCGGAGCGGCCTCATGAAACTCACCGACGCACAATGGGCACGCATCGAGCCCCTGATCGTCTCCCCTCCTAAACGCCCTGATCGACGCGGCCGTCCCCGACGCGCCGACCGCGAGATCCTCGAAGCGATCCTCTGGATACTCCAGACCGGCGCTCCCTGGGCCAAGCTCCCCGCCCACTTTCCGCCCAGGTCCACCTGCCACGATCGCTTCCAGGCATGGAACCGAAACGGCACCCTCCAACGCATTTTGCAGGTGTTGGCCGAAGAACTCCACCAACAGGGCAAGCTCAAGCTTTCGGAGTGCTTTATCGATGCCTGCTTTGTCGCTGCTAAAAAGGGGGGACGTGTGTGGGCAAGACAAAGCGAGGTAAAGGAAGCAAACTCATGGCGATAGCCGATGCCAATGGGATGCC # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGTAGCCTACCTATGAGGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.00%AT] # Reference repeat match prediction: F [matched GTTTGTAGGGTACCTATGAGGGATCGAAAC with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.70,-0.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [65.0-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.37,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 4 1676860-1677293 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP019797.1 Rhodothermus marinus strain AA3-38 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 1676860 30 90.0 35 AC..C......................... ACATGTACCTGCGCGGAATATCGGTTACGGAGATC 1676925 30 100.0 37 .............................. CCGAGCACGCGGCCGCATTCCCAGCAGCGGATTTCGA 1676992 30 100.0 36 .............................. ATCTGACAATATCCAGCAGGCGTCCATACGTAAACC 1677058 30 100.0 38 .............................. TCGTAGAAGACGTCCGCGTCGACGTCCTCCACCGACTC 1677126 30 100.0 39 .............................. GACTGAGAAAACAGCTCTTGCGCCTGGGCCTCGAGATCG 1677195 30 100.0 39 .............................. GAGCGGTATCGTGATGAGCTGGCCAGGGGTGCGCGGTTG 1677264 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ======================================= ================== 7 30 98.6 38 GTTTGTAGCCTACCTATGAGGGATTGAAAT # Left flank : CAAGCTTTCGGAGTGCTTTATCGATGCCTGCTTTGTCGCTGCTAAAAAGGGGGGACGTGTGTGGGCAAGACAAAGCGAGGTAAAGGAAGCAAACTCATGGCGATAGCCGATGCCAATGGGATGCCGCTGGCGGTGCTGGTGGCCAGTGCTTCGCCACATGAGACCCGGTTGGTCGAAGCCACTCTGGCGGCTCGTTTTACCGAGGCCAGGCCAGTACGTTTGATTGGAGATCGGGCATATGACAGTGATCCGCTGGATAAGGCATTGGCGCAACAGGGTATAGAGATGATTGCCCCGCATCGGCGGAATCGGAAGCGGAAAAAGACGCAGGATGGGCGTAAGCTTCGTCGCTATCGACGCCGTTGGAAAGTAGAGCGGTTGTTTGCGTGGTTGGGGCATTTTCGCCGGATTGTGATGCGTCATGAGCGCTACGCGGAAAACTACCTGGGTTTTGTATTGCTCGGGTGCCTCATGATCTTCTTGAGAACCTTTTTCGGATG # Right flank : TCCGTGGCGATCTGAGCGATCGGTTGTCACTCTATGCAGTAGTGATTATAATTAGGGGCAGGAGGTGAACCATGGCTCGAAAAGCATCACCGGACAACCCACCCTGTCCCCGTTGTGGCGACAAGCACACGGTCCGCAACGGCCATAAAGACGGCCGCCCGCGCTGGGTATGTCGCGGCTGCGGCCGTTCCTTCGGTCTCACCCTGGGCACCCCGATGTATCGTCTGCGCACCCCACCGGCCGAAGTGGCCCGTGCCCTGCTCATCGTCATGCGGCGGGGGAGTTTGAGCGCCGCCGAGGAGATCACCGGCCACAAGTATGAGACCATTGGTCGCTGGCTGCGTCGGGCGGCACACCATGCGGAGGCCATCACCTAGGCCCTGGTGTGCGAGCTCCAGCTGAGCCAGCTGGAAGTAGACGTCTTCTGGTCGTTTGTTAAAAAAAGCGGGGCGCGCTTAGAAGTAGGACAAGCACGCCGGACGGGGTGGGCCCGCGCTGGG # Questionable array : NO Score: 9.19 # Score Detail : 1:0, 2:3, 3:3, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGTAGCCTACCTATGAGGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.00%AT] # Reference repeat match prediction: F [matched GTTTGTAGGGTACCTATGAGGGATCGAAAC with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.70,-0.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [53.3-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.37,0.41 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 5 1699494-1698838 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP019797.1 Rhodothermus marinus strain AA3-38 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================================== ================== 1699493 37 100.0 54 ..................................... CGAATGTAGGCGAGCATCTCGCTAAGCAAGCGGGCCGTTTTGTTTTCGTACTGC 1699402 37 100.0 36 ..................................... ACAGCCATGGACGCCAAGTTCTACCGGGTCAATGAA 1699329 37 100.0 37 ..................................... GCTTGTAGGCCTCCCAGCTCAAAAGCCGACGCTCTTT 1699255 37 100.0 36 ..................................... CTGTCTCCCTCACAATGTTGTAGGGCAAGTTCTTAT 1699182 37 100.0 43 ..................................... TTGGATAGGATCGGAACCGCTCAAAACGAAAATGGACGATTTT 1699102 37 100.0 39 ..................................... CGTCTGGATCGACGCTGTCGTGAACGATAAGACTATCCA 1699026 37 100.0 36 ..................................... GGTAATGCGCCATAAATATTTCTTTCACCGTCTTCA 1698953 37 100.0 42 ..................................... GGTTAAAGATATGTTCAACAGCCCGCCGCCGTTCAAAAAGAA 1698874 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ====================================================== ================== 9 37 100.0 40 GTCTGAAGACCTGACCCGATGAAAAGGGGATTACGAC # Left flank : AATGGCCCTGGCCGGCATCTGAAGCGGAAGCCACCGCCGAAGAGGAAGAAGCCGCCGAGGATGACTCGGACCTGTGGTTGGATGAGATCGGGCCCAAGAGCCAGGACATCGTTGCCGAGGTGGTGGACAACAGTCGTTCACCGTTTACGATTCGTGTTTTTGTGCGCGGCCTGGAGAATGAAAGGTTTCCCTGTGGGGGCGCCAATCACAGGGTGCTTGAAGTGGGGCAGCGTATCCGGGTACAGGTGGCCCAGTGGAACAAGAAGGAGGGACGCCCGGCCATGTTCAGGGTGCAGAGCATTCGGGTTTGATTCCGCGAGAGGTTGACTTCTATGGCCTGACTGTTTATAATGCGATCAGGATGGAGGAGGGGGTGTGACACGGAATTGTCACAGGGTTTTCGGAGCAAATTCTATTCCGTTTTTTGACGTGTTGTTGGCGAAAAAATCGGCCTTTTTGAGGGCAAACAGGCCGGTTCCAACGAGCCCCGTAACAATGGG # Right flank : GAGGGACGTCGCCATTCATGAGTCGAGGGTTGACAACAGCTGAAGTTTGAGGTATCACTCATAGAACTTTATGATATTTCTGTGGAATTATGAAGCTGTCCGATTAGGCCAGCAAGCACGGCGTCTCTTACAAGACGGCGTAGGACTTGTGACCGTATGGGCTGGCCCACCTGACGGGCCCTACCGCGAGTTCCGCGGGAAGTGACGCCTGTGGAGACTCCTCTGACGGCGGAACCCTCCGAGTCATGGGTCGATGAAGCAGGAAGAAGTCCGGGAATAAAATTCCATGGATTTCGGAACGGCACGTGTCTCTGGATCCGAGTTGATAAAGCATGGCGGTTTGGGTCTGACGCGAGGCGCCTTTCAAGTGGTCGTTGGCCTTGTGTAAAGAGGTGGTGCTGCGCAAACGACTTCTTACACAAGGTTCTGGTCTCTATGCGGCTTTGAGCGTCAGACGGACAAGATTGGCACTTCAGGAGGGGCGGACACAACCCGGTCGG # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:-0.08, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTGAAGACCTGACCCGATGAAAAGGGGATTACGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,12] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.50,-5.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [48.3-46.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.74 Confidence: HIGH] # Array family : NA // Array 6 1725975-1723943 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP019797.1 Rhodothermus marinus strain AA3-38 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================================== ================== 1725974 37 100.0 38 ..................................... ACGAAACGCTTCCCAAGCTGATCGAAGCCGTTGCCGAA 1725899 37 100.0 40 ..................................... GGAGAAACGGTGCTCACCGAGACGGAGGCAAAAATTGGCG 1725822 37 100.0 39 ..................................... CAGATAGCCAGCCACCGCCCGGCTTACCTCGCCGGGCCG 1725746 37 100.0 40 ..................................... CGTTCGTCGTTGTCTAGCAGGTACACCTTCTGGCGCCACC 1725669 37 100.0 44 ..................................... ACGGCAGCAACGTCCGGTCTTCATCGCTCTTTCAGCACAGGAAC 1725588 37 100.0 42 ..................................... TGAATTGTATGAAATGGAAGTAGGCGACTTTCTTTCCTGTGG 1725509 37 100.0 40 ..................................... GGAGAAACGGTGCTCACCGAGACGGAGGCAAAAATTGGCG 1725432 37 100.0 38 ..................................... TTAATAACTTCGTGTTATTTTTATTCAATTCACGGAAA 1725357 37 100.0 42 ..................................... TGCGCGCGGACGTGCATGTTTTTGTGCAGAAATATGTAGGCA 1725278 37 100.0 38 ..................................... GCAGGTTAATGCGCTCCACGCTGCCGATCACCTGTGCC 1725203 37 100.0 41 ..................................... GCCCCTTTCCTGGGCTATCTTTTCTAACTTGGCTAACTGGG 1725125 37 100.0 48 ..................................... ATGGTGAGACCTGCTGAGCGCTTGCTCAGCAGGTACACATGGGGCTGC 1725040 37 100.0 36 ..................................... CAGCCATCGCTCCGAAGAATATACCGTGTCCGCCAA 1724967 37 100.0 38 ..................................... TCACGTACACATCCGTGCGCACGGGCGACACCTCCACC 1724892 37 100.0 54 ..................................... CCCACACCGTCGCCATGATCGACGCGGGCGCTCCGCCACTCTCAAGCCGAGACG 1724801 37 100.0 52 ..................................... GCTGTAGTAACCGGACCAGCGCGCAGGTGAAGGTCATCTCACCCATGACGTG 1724712 37 100.0 41 ..................................... GAGAGTAGCGTACCATTTCTCCATGCGCGGTTGGTTATTGG 1724634 37 100.0 40 ..................................... AGTATTGTACCGGAGAGAATGGGGAAATCGACTGGGATCG 1724557 37 100.0 37 ..................................... TATCGTCCAAGCCGAGCTTGGGTTCGGACCTGTCGGC 1724483 37 100.0 58 ..................................... GGTTGGCCGTAGCCGTTTTATTCGATTAGCAAGCCCCTTGCCTTAAGGGCTTGTTTGA 1724388 37 100.0 36 ..................................... AAGATAGATCATGGCAAGCCCGGCACATACCATTCG 1724315 37 100.0 52 ..................................... GCTGTAGTAACCGGACCAGCGCGCAGGTGAAGGTCATCTCACCCATGACGTG 1724226 37 100.0 47 ..................................... GCGTTCCAGAATCTCGGCAGCCTCCGAGAGTTCGGCCAGTGCCTCTA 1724142 37 100.0 47 ..................................... CTGTTCGCGCGGTTCGTGTAACCCAGGATATCCTGGGCTACGCGGTG 1724058 37 100.0 42 ..................................... CTGCGTGGCCCGCCTGCGCATGAGCGGGCCCATGTCAGCCAA 1723979 37 73.0 0 CC.....G..T.....T..........A...AG..TT | ========== ====== ====== ====== ===================================== ========================================================== ================== 26 37 99.0 43 GTCTGAAAACCTGACCCGATGAAAAGGGGATTACGAC # Left flank : GAGGCGGAGGTGAATGCCTGGCCCGGGGCGTTCGATCTGGAAGTGAGCTGTCTGATCGAGGTGGAAGCCGAGCGCATCTATGACGAGGTGGAGCGTATCTGCGAAACGATCAAAAGCTGGGCGCGCTCGCATCTGAACGGGCGCGAGCCTTACGGCTCGATTTCATGGAAGGTGCCTCGCATGTTAGTGGGGCGAATGCGGATTCGTTACGAAGAAGCCCGGGAGTTTATGAATCGGCGGCGTGAGCGCATCTGCGCGCAGGTCCAGCAGCTCTGCAACTGATGTCGGAGGGGTGGCCGGCTTCGGCCACCCCTCTTGACATTCCATTGAAAAACACGTATGCTCCCTGGCAGATCGATGCGACCGGGAGAGGGTGTGACACGGAATTGTCACAGGGTTTTCGAAGCAAATTCTATTCCGTTTTTTGACGTGCTGACGGCGAAAAAATCGGCCTTTTTGAGGGCAAACAGGCCGGTTCGGATGGACCCCGTAACAATGGG # Right flank : GATAGTCTTGGGTGTAAGGTCGCTCGTAAGAGGTAATGCTCTGCGGTTGATCTTCCTGAAAGACCTTTTTATTTTCCGGAAAGGCTGGTGTATTGGGCGCGCCAAAAGTTTCAACCTGGAGATCAAATGAATGAGGTGCAGCCGCTTTTCACAGTGGGATATGGCACTTCCTCAATAGAGGAGTTTATCAATGTGCTCAAACAGTATGAAATTAAATGCATTGTGGACATACGCTCGAATCCTTATTCAAAATTCAATCCCGACTTTTCTATAGGAACGCTGAAGAATCATTTAGAAAAAAATGGAATTGCATATGAGTACATGGGGGATACTCTTGGGGGTAAACCTACAGACGAAAGCTGCCTCGAAAACGATAAACCGATATTTTCTGTAATAAAAGAAAAAGATTTTTTCAAAGAGGGAATTCGGAAGTTACTTTCGTTGTGGAGATACTATCAGCCACAGCGAATTGCTCTAATGTGTGCCTGTCAGTATCCTGA # Questionable array : NO Score: 3.11 # Score Detail : 1:0, 2:0, 3:0, 4:0.95, 5:0, 6:0.25, 7:-0.09, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTGAAAACCTGACCCGATGAAAAGGGGATTACGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.35%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.50,-5.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [51.7-46.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 7 1733522-1732288 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP019797.1 Rhodothermus marinus strain AA3-38 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =============================================================== ================== 1733521 37 100.0 42 ..................................... GGCCTCAATTAACCACCGCCGGAAGACTCTCCTCAACGGCTC 1733442 37 100.0 42 ..................................... TGCGAATGCTCCGGAGATTGTCCAACTCGCCGCTCTGGTCCA 1733363 37 100.0 39 ..................................... CCAATCGAACGGAGACGAGCCATGACGGCGACAACTGAG 1733287 37 100.0 42 ..................................... TCTTACGGTGGCCCTCGATAAGCTGAAGGGGACCGTGAAGAC 1733208 37 100.0 37 ..................................... GCCAGGTGCTGCCGAGCAGTCGGACGACGTGCTGGCT 1733134 37 100.0 40 ..................................... TCGAACACGTGGAGATTCTGGAAGCGCCGGTTGTTCTCGA 1733057 37 100.0 38 ..................................... GTCGACTGTTTCGCCTGGGGATAGAGCCCGCTCAGCAG 1732982 37 100.0 63 ..................................... CATTCCCGCGCTTCGGTAATGATGAGGTCGCCGAGGCGCACAAATTCTCCTTGCTGAGGGGCG 1732882 37 100.0 40 ..................................... CGTTTACGTCGGGCAAGTTTTCGACTGAAACCCGGGCGGC 1732805 37 100.0 42 ..................................... AGCAGGAAGTGCTGCTGAATGTCCTCAGCTGCTTCAATTCGT 1732726 37 100.0 44 ..................................... CCGGTAGAAGGCGAAGCCATGATGGCTCTCTCGCGGCGGGCCAA 1732645 37 100.0 37 ..................................... GCCATTCCCTTTCAACTAACTTCATCGCCGAGCTCAA 1732571 37 100.0 41 ..................................... ACGGCGCTTACGCAATCCTCGTCCGCATATTGTACGGCCAG 1732493 37 100.0 52 ..................................... TCAACGACTTTGGCGTTGACGTCATTCACGCACACGGGACACTGAACAAACA 1732404 37 100.0 43 ..................................... CGATTTCTGGTTGTGGGTCTGGTCCTGGCTATCCGCACCTCCT 1732324 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== =============================================================== ================== 16 37 100.0 43 GTCTGAAAACCTGACCCGATGAAAAGGGGATTACGAC # Left flank : ACCGGCGGTGTCGCGGGATCGCTGGCCGGGTTCCCCGGAGTTGAGCTATCATATGCTGGAGGCGCTTGGCGATCCGGTGGGGCAGTTGTTTGCCCGACGGCGTTCGGTGTTGCGCGAGGCGCTGGAACGCTGTCGCGACTCTCTTCTGCTGGCGGGTAGTGCCGCGCTTGACGAACAGGAGTACGAAGCGGTGCGCAACAGGCTGGAGGGTTTTCTGCACGAAGCGGCCCGGGTGGTAGCGGAGTCGCTGCGCGCGCCCCAGTTGCCGCGTTCGGAGGTGCTGGAGTGGGTGGAACTCGGGCCGGCCGGGGCTTGACATTTTAGCGACAGAGGCTTATGCTCTGGAGTGTACAGGGAGGTAGAGAGAAAGGGGGTGTGACACGGAATTGTCACAGGGTTTTCGAAGCAAATTCTATTCCGTTTTTTGACGTGCTGATGGCGAAAAAATCGGCCTTTTTGGCGGCAAACAGGCCGGTTCGGATGGGCCCCGTAACAATGGG # Right flank : TTTCGGCGGGGCGTAAAAGCGAAAAGAGGCCTTTATCTTTGCTTCAGCGCCTGTAGCACTTCAGGAAAGGCTTCTCAGCATTCGATGGGCTGAACGACTCATGCGTCTGTTCTGATGGCGTTTTATTGTAGCAGAAAATATGCCCGCAGAAGGCTTCGTAAAGGCCAGTTCGGATGATTATCATTATCTGGTTGCTGCTCGGAATAGGTTCTCTTGCATTTCTGATCTATCGCTACAATCAAGTCTGTCGAATATGCCCTGAGTTAAACATATTGATATTTGCCCTTACATTGCTCTTCTTGCTCGTGTTTTATCTTCTGGGATCAGAAATCGTGCTCGTGCCTGAATGTGCGATTCTGCTTATTGTTATTTACTTTCTGCTTATTCTGTGGCGCTTTTTCGTCTGTGATAAGATTCTGTTTATTGCAGCAATAGTCACTATTGTTTCTTTTTTTTAAGTTTGATGACGAGTTTTATAAAGAGCATTATTATTCGTCGGG # Questionable array : NO Score: 3.12 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:-0.13, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTGAAAACCTGACCCGATGAAAAGGGGATTACGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.35%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.50,-5.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [48.3-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.37 Confidence: MEDIUM] # Array family : NA // Array 8 2077903-2072947 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP019797.1 Rhodothermus marinus strain AA3-38 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================== ================== 2077902 30 100.0 38 .............................. CCGGATGCGCCTTGATCATCGCGGCGGCAAAGATCGGC 2077834 30 100.0 37 .............................. ATTAATCAGCCATCGCATTTTTCGCATCCTCGATCAG 2077767 30 100.0 35 .............................. CGCGGGCGGTGGTGCAGCCAACGCGCACCACACGC 2077702 30 100.0 37 .............................. GTTAGTCGTCGAACACGTTTGTTTCTAAAATCCACCA 2077635 30 100.0 36 .............................. GGTTACGTGCAGATAGACGCGACCCTCGCGGGTCTC 2077569 30 100.0 36 .............................. TCACATATTTTTCACGCGTTCTTCACAATTCCTTCA 2077503 30 100.0 37 .............................. TCTTCAAGCTCAACAGATACGGGCGCCTCGAACAGAT 2077436 30 100.0 38 .............................. ACCAGACACGATCCCCGTCTCGGTAGGCCAGAGAGATT 2077368 30 100.0 36 .............................. CGAGATGCCGCGCGGGCGGCTACGCACGTATTCCGC 2077302 30 100.0 36 .............................. ATCATCTACCGCGGTTATAACCCATCACCCTTCTCT 2077236 30 100.0 38 .............................. CACAACAACGTGCGCGGGCGGTGCGGTGAGTTCTGTTT 2077168 30 100.0 35 .............................. TGACGGTCGTGGCTGCAGGCGACGGCACGGCGCCC 2077103 30 100.0 35 .............................. TGCGTCAGGTATGGCGGTAAGCTGACGATTACGGA 2077038 30 100.0 37 .............................. GTGAGTCATTTCAACATACGCGGCACGCCGTCGCCCG 2076971 30 100.0 37 .............................. TGCTCAGACAGATACCGGGACAGCAGCAGAAAGCGCG 2076904 30 100.0 37 .............................. TCTTGATGTAGGCAATAGGATCGGCATTGAGCACGCG 2076837 30 100.0 37 .............................. TCACCGCAAGTTCGATTTCGGCGGCGTGCTCATCGAA 2076770 30 100.0 40 .............................. CACGCGTTGACCGTTTACGGATTATGGATCTCGTCTTCGT 2076700 30 100.0 35 .............................. GTACCGTCACCTCTTCATCCATCCCCGCCAGCCTC 2076635 30 100.0 38 .............................. CTTCAAGTCCAGTTCGTCGTAAGGGTACGCCCGGAGAG 2076567 30 100.0 37 .............................. GAAGCCATGAGAGCCGTTCTGACGCGAGATCTCCCGT 2076500 30 100.0 38 .............................. CTCCTCCAGAAAGGCGGCCAGTCGCTTCACCTCGTTCA 2076432 30 100.0 36 .............................. GATTCAAAATCCACCACGAGATGCCGCGCGGGCGGC 2076366 30 100.0 34 .............................. TTCGAACTCGCTGTCGTAGGCGCTTCCCAGCCAT 2076302 30 100.0 38 .............................. TTTGTTTGGTTGGGTTGGTAGATGGCTGCATTGCAAGG 2076234 30 100.0 38 .............................. AACCACAGCACAGTCATGCAGACGCAGCAGACTCAGCA 2076166 30 100.0 36 .............................. TTGTGTTTGTTTTGAATGCTTCCGGCAATGTCCTCA 2076100 30 100.0 36 .............................. TGCAGCAGGCGCGCGCGGCAAGCCGCACCGTCGTGT 2076034 30 100.0 36 .............................. TCGGGATGGTAGATGATGAGGCGATCTCCGGCCTCC 2075968 30 100.0 36 .............................. CTCCTTCTTCTCCTCAATGGGTTGGATCTCCCTCAG 2075902 30 100.0 38 .............................. CACGCTGAGCGGCCTGGTCACCATTGCCATCTCAGCTG 2075834 30 100.0 38 .............................. GGTTCTGCAGGATGCGCTGTAGGTCTGATAGGAACACG 2075766 30 100.0 36 .............................. GCGTCAAAAGCCCGCTCCCAGGCTACGTTATCAGCA 2075700 30 100.0 38 .............................. GATGTGAATCCGGGCGATCTCCACGCGTTCGGTGGACG 2075632 30 100.0 36 .............................. GGGGATCGTCCGGCCCGCCCGGCTCAGATCGTCTAT 2075566 30 100.0 39 .............................. CGGCCGCACGCGCCAGGAAGTCATCGAGCAGGAAATCGA 2075497 30 100.0 37 .............................. CGTGCTCAACGCGGACTCCGACGGGGACTACGTCGGG 2075430 30 100.0 37 .............................. TTCGGAGGACGCACGGGTAGCGCCAGCCCTTCAGCTT 2075363 30 100.0 36 .............................. CGATGCGGGGCAGGTAGCCCAGTGCAAAGCGAAGCA 2075297 30 100.0 37 .............................. GACGGGCCTGGAGCAGATCACCGGGCCGCCCGGCCGC 2075230 30 100.0 37 .............................. AAGCTATTGAGGGACGCTATGATACGGAGTATGCGGT 2075163 30 100.0 36 .............................. CCTGCAGAGATGTGCTTTCATGGCTTCATCGTTCCT 2075097 30 100.0 36 .............................. TTATGGCGTGGGTGGTGAACGAGTCGTAGCAGTCGT 2075031 30 100.0 36 .............................. TCTCAATCTCGTCGATCCACAGCACGGCGGGCGCGG 2074965 30 100.0 38 .............................. CCCCGGATCGGCCAGCGTCTTCTTGTAGCGCTCCAGCG 2074897 30 100.0 36 .............................. CGATGCCGGACGCGATCGTGAGTCGTCCGAACTGAA 2074831 30 100.0 36 .............................. GCGTGAAGACGCGCGAAGAGAAAGAGAGGGAGGCGG 2074765 30 100.0 36 .............................. GGTGGCGCTGAAGCTGCTCGACAAGCGCGTCGGTCG 2074699 30 100.0 39 .............................. CTTCGTGGGGCGGCGATGGTGTGACGTTTGCGCTACGAG 2074630 30 100.0 36 .............................. ACGCTTGCCGACGTCCGCGCGCCGGGCTTTGCCGAG 2074564 30 100.0 37 .............................. CGCAGGTACATGTCAATCATGCGCTTGAGCGTCTTGG 2074497 30 100.0 37 .............................. ACAAGGGCGATTGGGGATATGATTACAGTGATTCCAA 2074430 30 100.0 36 .............................. GATTGTAAGCCGGAAGCGCGGCGTGTCTACGCGCTC 2074364 30 100.0 36 .............................. GCGTAAGGCCGGTCGGCGCGCCCGGCTGCTGATCTG 2074298 30 100.0 35 .............................. AGCGCATCGAAGCCGTCCTGCTTTACCGACCGCGC 2074233 30 100.0 35 .............................. GGCGGCCATTAAGGAAGGCAAGATCGAACCGGCGA 2074168 30 100.0 37 .............................. ACTTTGAAGAGCGTGGCGGCGACGTCACAGACGAGGA 2074101 30 100.0 37 .............................. GTCTGGAAGGATACCGATCTCGCCGGACGGCCTGCAG 2074034 30 100.0 37 .............................. TGCAGCGCCTGTATGGCTGGTCGTGGCGCAAAGCGCG 2073967 30 100.0 36 .............................. GGAGGACCCGGGCCTGGAGCGGGCGCGGCGACTCTT 2073901 30 100.0 36 .............................. CGGGCGAATACCACGCGAACACGGTGTAATGCTCCG 2073835 30 100.0 37 .............................. GGCAAACCGCCACGGCACTTCGCCCTGGCGGCTTACA 2073768 30 100.0 36 .............................. CGCGACCGGTCGCCCAGTACTGGCGCGGCAGCGCCT 2073702 30 100.0 35 .............................. TGAACGAGACCGGTCCGCCCCCGGTGGCGCAAGGC 2073637 30 100.0 36 .............................. CAAAGTTTGCCGGCGAATGACGGTGCGGCAATACCT 2073571 30 100.0 36 .............................. TTCTACTTCCGTTATTGGGATAGACGAACAACTTAT 2073505 30 100.0 36 .............................. GAATTTGAGGCGCGACTTTGAGATAGAAGTGCGAAG 2073439 30 100.0 36 .............................. CCGGTACAGATATTTCAGAGTCGACGATCCACAGAT 2073373 30 100.0 36 .............................. ATGAGGTGGAGAAGCGCATTTCGGCCGTAGCCGAAA 2073307 30 100.0 34 .............................. TCTCCACGAGGCGGGGACCACTCCCGTCCGTCGC 2073243 30 100.0 35 .............................. GCTCACGCACAAAGGCGGCCGTGCGGTCGAGCTTG 2073178 30 100.0 36 .............................. ATTTCTCGGCGAAAATTATCCCATCCTCGACAAACG 2073112 30 100.0 37 .............................. AAACGCCCTCTTCTGATTACTGGAAGGCCGGCGATTT 2073045 30 100.0 36 .............................. AGCGAGAAGCGCCAGCCTTCCTCGAGGAAGACCTCG 2072979 30 93.3 0 .........................CC... | C,AG [2072949,2072957] ========== ====== ====== ====== ============================== ======================================== ================== 75 30 99.9 37 GTTTTAATCGCACCTTTTTGGTATTGAAAT # Left flank : TCAGTACCCAGCACCAGACGCCGGCTGTAACGGACGTCGCGCAGCTCGTAAAAGATGACCACGTCTTCGTCGGGGTTCATGAGCCGGCCGGCTTCGTGCTGCAGGCGCTGAAACTGCGCTTCGGTCAACTCGCCCTCGAAGACGGAGCGCTGCACCCAGGTCAGATAGCGCCGGAAGAGCTTAAGCATTTTGGCGACGCGCCGCACGTTGACATCGTAAACGGCAATGTAGTACGGCATCGTAACCTCCTGTAATTACGTGAGAAGTGCCCTGACTGGCGTCGTCGACCCCAAGATAACGAACTGAATTCGGCAACGCAAATGATAGGTAAAAGAAAATCTGTTGTTTTATTTCTTTTATTTTTAGCAGTTTAATAAAAGTCGTCGGACCCCCGGGGTTTCAGGGGTAACCGGAGGTCGACGACTCCGGGGACTTGACATTCCGGATCAAATCGCTTATAATACCCTCCAGAAGCCGGTTCTGCTCTTTGAAAGGCCGGG # Right flank : TTCCTCCGTCGTGGCTTTTCGGTGAGGTGAAACGAACTGTCTTGTGCATTCGAGGGGCGTTGCATATCTTGGGCGGTTGTTCAGGTTAACCGGTTACGATTTACGATCTATGAAAAGCTATCTGCTTGTGCTGCTTGTCGGGCTGTTGCTGGTCGGATGTGCCCGCGAGACTCGTCCGCTGCGTCTGGCGCCCATCTTTTCGGATCATGCCGTGCTTCAACGTCAGCAGCCGATCCGTATCTGGGGGTGGGGGGCACCGGGCGCCACCGTCACGGTGCGTCTCGATACGGTGACGGCGCAGACCGAGGTCGATACGGAGGGACGCTGGCTGGTCGAGCTGCCCCCACAGGAGGCTGGCGGACCCTACACGCTCGCCGTCGAAAGCAACGGCGAACGGCGCGTCGTCGAAGACGTGCTCATCGGCGAGGTCTGGGTGGCCTCCGGCCAGTCGAACATGGAGATGCCCCTGATGCCGCGTCTGGCGGGCTGGTCGCCGGGCG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAATCGCACCTTTTTGGTATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-2.40,-2.20] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [46.7-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.5 Confidence: HIGH] # Array family : NA // Array 9 2274436-2273395 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP019797.1 Rhodothermus marinus strain AA3-38 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ========================================= ================== 2274435 30 100.0 36 .............................. CCGTGACCCAGTAGTAGTAGGTCGTGCCGTAATCGC 2274369 30 100.0 41 .............................. CGTTACGACAAGCTGATACTACAGCGGGACGATCACAACCA 2274298 30 100.0 37 .............................. CTGCGTCTCGCCCAAGCGCGAAATGATTTGGCGAGCG 2274231 30 100.0 36 .............................. TTGTCTCTTCCGTGGCGGCGATTCACGACGTGGTGG 2274165 30 100.0 36 .............................. TACGAGATCCCAGATCGGTTCTGGGTCCCGCATTGC 2274099 30 100.0 41 .............................. AGCCATTCGGCAACACGGTAAACCGCCGACTGATACAACCG 2274028 30 100.0 35 .............................. CGGGACGGGCGATCTCGTCTTCGGCCGGTGCCGCC 2273963 30 100.0 38 .............................. TTTGATGCGGGGGCAAGGGGCGGCGGCGGGACCCCCCG 2273895 30 100.0 35 .............................. GCGACACCACGCGCTCACGGAGCTGGCCGATGTCG 2273830 30 100.0 37 .............................. TCGATCATCTCGATGTTCTCGAAGGAACGGATCAGAA 2273763 30 100.0 36 .............................. AAATTTACCTTCAGCATGTTGACGTGCTGAACGCCG 2273697 30 100.0 37 .............................. TGATGGCGCACGAAGATCCGGAAGCGTACCGGTTTGT 2273630 30 100.0 38 .............................. CTTTTTCTGTTAAATAATAACGCAATAGATCAAGCGCA 2273562 30 100.0 39 .............................. TCACCTGCACGGCCGAGATCGTCCTGGACTGCATCGAAG 2273493 30 100.0 39 .............................. TGATTGTTGGGATTCTGGAAGAATATTTTGGCGAAGTAA 2273424 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ========================================= ================== 16 30 100.0 37 GTTTTAATCGCACCTTTTTGGTATTGAAAT # Left flank : CTTGAATTGTATTTTTAGTTTCCATCCTACGGTAAAAAATAGCGGCAGAGGTGTCAAGCAGGGCTTTGGTGAAGAAACGAAAAAGTCGCATCAGTGGCACCGGCCGGTGTAGGGGCAGTCGTCGGTCCGGAACGATTTGCTTCTCATGTGCTCGTCCGAAAAGCCTCGATCGTGGGCAACTGAAAACAAGCCCCGGAGCTTGATTCTGAGACCGGTGAAAAGAAAGACTCATGCGGGCGTAAACGCTGTTTTCCTGAAGGGAAAGGTTCGTCGTCCGGTCGTCGTCCTCCGTGATAACGAGAAGTGTTCAGCGAAGATCGAGAAAGTAAATTCTGATCTTATTGTTTTAAGGTGTTGAGTTTATTCTGGTTGTAAAAAGTCGTCGGACTCCCGGGGTTTCAGGGGGTAACCGGAGGTCGACGACTCCGGGGACTTGACTTTCCGGTTCCAATCGCTTATAATGCCCTTCAGAAGCCGGTTCTGCTCTTTGAAAGGCCGGG # Right flank : GATGCAAGAAAGCCCCGGAGCAGCAGCTCACGGGGCTTTGTTAATTTCAGGACGTTTGCTGTAGACGCGGGCAGCTACTCCAGTCCCAGCACTTCCGGACCCTGTACGAAGACGATGTCCACGGGGATGCCGGCCTGCTGGATGCGGGCCAGGTCGGCGCGGAGCGTGTCGTCCATCTGACCGTAGCGCTCGATGAAGGCGGCCGTGGCGGCGTAGTCGCCGTCGCCCTGCAGGTGGAGGATCTGCTCCGAAAGCGCATTGACGGCTGTCTGCATGCGCTCGGGCACGACGCGGTAGGTGCCGGTGGCCGCATCGCGTGTGAAAGCGCCCTGCTCCTTGAAGAAATTGAACCGGATGAGGTTGGCACGGCCGTGGGCGCTGGCCGCGCCGAAGCGAATTGAGCGGAAAATACCGGCCAGGAAGGTCACGTAGTGATCCATTGGATCGGCCTCCCACTCGCCGCGATCGATCAGCCAGGTGACCATGTAGAGGCCGAGCAC # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAATCGCACCTTTTTGGTATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-2.40,-2.20] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [46.7-46.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.5 Confidence: HIGH] # Array family : NA //