Array 1 8191-8806 **** Predicted by CRISPRDetect 2.4 *** >NZ_SWRG01000019.1 Clostridium sporogenes strain IFR 18/024 contig00019, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================== ================== 8191 30 100.0 36 .............................. AGGAGATGAATTAGAATTAGTATTAGAAGGTGATGA 8257 30 100.0 34 .............................. CAATAATTGCAAAGGAAAATAATAAGCTAAAAGG 8321 30 100.0 10 .............................. TCATTTTGTG Deletion [8361] 8320 30 100.0 35 .............................. TTCATTTTGTGAAAATATATAAATGCATACAGTAT 8386 30 100.0 34 .............................. CAGAGTATTATAGGTTATGAATGGGTTACTGAAT 8450 30 100.0 10 .............................. GAAAATGAGC Deletion [8490] 8449 30 100.0 35 .............................. TGAAAATGAGCGTAGAGCAAATGAAGCAGTAGAAA 8515 30 100.0 36 .............................. AGAAACACCTTCTATTACTTTAGGAAAAGTTATAAA 8581 30 100.0 36 .............................. TTTATTAAGTCCTCAAAATGCTTTCCATACGTTTCA 8647 30 93.3 35 .......CT..................... TTGTATTCATTTATTGTATTCTTAAATACATTCTC 8712 30 90.0 35 ........T......AG............. CCATAAATATCTAATACAGAAAACTTAGAAGATAC 8777 30 86.7 0 A....G......................GC | ========== ====== ====== ====== ============================== ==================================== ================== 12 30 97.5 31 GTTGAACAATAACATGAGATGTATTTAAAT # Left flank : AAAAGCCTACATTCATGTGTTTACTTTGTTTTTTGTAGTAAATATTTATGATATGATTGTTCTAGATATAGGTCTTTTTTGTCACAGTAAAAAAACTAGAATACCTGGTACAGAAGATATGGATAAAGAATATAGAAATCCATGGCATCATATAAAAGGAGCTGGTATTGGAACTATAATAGGTGCTGTAGTAGCATTATTATCTGGAGGAATGGTTCATTTCATATCAATAATATAGTATTTAAGCAGAGAACCCAAATCTACGATTTGGTGTGAGTCACTTACTTCTTTGAGGCAACGAGAAGGAGTTTTATAAATTGAATTTTCCCAGGCGTAATAAATTTTAAAACCTATTCTAGCTATTGAAATATAAGGCTTAGAGTAGGCTTTTATTATGTATTTATAAAAAATGGGAATCGGTTGGAAAACTTTTTATAAAACCTTGTAAAATCAATAGTTGTATGATATTCTTAAAAATAAGTAATGGCTATTTTACTATG # Right flank : CAGAGAACTTTAATATGTAATTTGGTGTGAATCGCTTACTCCTTAGAGGCAACGAGAAGGAGTTTCATAAATTGAATTTTTCCAGGCGTAACAAATTTACAAACCTATTCTAGTCATTGATATATAAGGCTTAGGATAGGTTTTTGTTTTATATTTATTAAAAAACATAATCACTTGGAAAACTTTTTCTAGAACCTTGTAAAATCAATACTTATATGCTATTCTTAAAACTAAGGAATGGCTATTTTGTTATGATTGAACAACAACATGAGATGTATTTAAATCCTTCTACGCGTTACGGTGTGTTGTAGCCTTTCGATTGAACAACAACATGAGATGTATTTAAATCCCGTTATGGATATCTATATACGATGTACACGAAATTGAACAACAACATGAGATGTATTTAAATGCTATATTATAATATTTGTCCTTAGCTTCTTTATATTGAACAACAACATGAGATGTATTTAAATTGTTGTTATAAGTACCTAATCTTG # Questionable array : NO Score: 5.78 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:-0.35, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAACAATAACATGAGATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [76.7-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.68,0 Confidence: HIGH] # Array family : NA // Array 2 9060-9677 **** Predicted by CRISPRDetect 2.4 *** >NZ_SWRG01000019.1 Clostridium sporogenes strain IFR 18/024 contig00019, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 9060 30 100.0 34 .............................. CCTTCTACGCGTTACGGTGTGTTGTAGCCTTTCG 9124 30 100.0 34 .............................. CCCGTTATGGATATCTATATACGATGTACACGAA 9188 30 100.0 34 .............................. GCTATATTATAATATTTGTCCTTAGCTTCTTTAT 9252 30 100.0 36 .............................. TGTTGTTATAAGTACCTAATCTTGTAACTACTGTTA 9318 30 100.0 36 .............................. ATGTAATATGTTCCTACTCCCAGTACCGTTCTATTA 9384 30 100.0 36 .............................. AATAAAATAGAGGTGCGGAAATCGCTATTTATTTCA 9450 30 86.7 36 G.......GT.....A.............. AATTGTCCAACTTTTCCATCTGGAATTGCTGGATTT 9516 30 86.7 35 G.......GT.....A.............. GAAGCTTCTGTACCGTAAACGATAGAGCCATCTTC 9581 30 86.7 37 G.......GT.....A.............. TTGTTAGCCATAAAATTTTATCTATATAATTAAACAT 9648 30 83.3 0 ........TT.....AG............C | ========== ====== ====== ====== ============================== ===================================== ================== 10 30 94.3 35 ATTGAACAACAACATGAGATGTATTTAAAT # Left flank : TACTTTAGGAAAAGTTATAAAGTTGAACAATAACATGAGATGTATTTAAATTTTATTAAGTCCTCAAAATGCTTTCCATACGTTTCAGTTGAACCTTAACATGAGATGTATTTAAATTTGTATTCATTTATTGTATTCTTAAATACATTCTCGTTGAACATTAACATAGGATGTATTTAAATCCATAAATATCTAATACAGAAAACTTAGAAGATACATTGAGCAATAACATGAGATGTATTTAAGCAGAGAACTTTAATATGTAATTTGGTGTGAATCGCTTACTCCTTAGAGGCAACGAGAAGGAGTTTCATAAATTGAATTTTTCCAGGCGTAACAAATTTACAAACCTATTCTAGTCATTGATATATAAGGCTTAGGATAGGTTTTTGTTTTATATTTATTAAAAAACATAATCACTTGGAAAACTTTTTCTAGAACCTTGTAAAATCAATACTTATATGCTATTCTTAAAACTAAGGAATGGCTATTTTGTTATG # Right flank : CAAATTAAAATCCATGATTTTTTTCCTTCAAAGTTGTTTAGTTTTTAGAGCGTGGTATTTTATTTAATTGTATAAAGTACATTAGTTAAAACTTATTTTTTCAAATGTACCCTTTTCTATGTGTAATTCAATATCAATATCTGCTTTTTTATAACCTACTAATTTTATACGATTATTACCTTTTTTTATTGGTAAAGTTAATGATGTTGTTCCTTTCATAGTGGCTTTATCTGTATTTTCTACAAGATTAACAACCGTATTGTCAGGAGATATTAAAACGATTTTTGCCTTTCCACTTTTTACTGATAAGATATATGGAACTTTCAAATCAAAATCAGATCTGTTACTTTTACTTATAACTGCATCATTTATATTTGGCTAATATAAAATTTATCGTAGTTTTACTTATTACCATAGTTTTGTTTCTTTGTCAAAAAGCAATGAATCATAAATTAAATTAATAAATCTAGAAGATTTAACGGTGTTAAACTTCCTATGCC # Questionable array : NO Score: 5.97 # Score Detail : 1:0, 2:3, 3:0, 4:0.71, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGAACAACAACATGAGATGTATTTAAAT # Alternate repeat : GTTGAACAGTAACATAAGATGTATTTAAAT # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA // Array 1 118854-119145 **** Predicted by CRISPRDetect 2.4 *** >NZ_SWRG01000008.1 Clostridium sporogenes strain IFR 18/024 contig00008, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 118854 30 100.0 37 .............................. AGTACCAATAAAACATTTGATAGAGGATATGATGAAT 118921 30 100.0 34 .............................. CATACAATACGTCATTATTTTGCTCAATTTATGC 118985 30 100.0 36 .............................. TAAGAATTACAAAATAACCAATCTTCTTCATTTTCA 119051 30 96.7 36 A............................. GTTTATAGAAAATGTACAGAGTGTGGTAAGAAAGTA 119117 29 83.3 0 T...............C....-..T....A | ========== ====== ====== ====== ============================== ===================================== ================== 5 30 96.0 36 GGTTTAATAAATATTATATTAGATATAAAG # Left flank : GATATAGAAAATTACAATACATATAAGAAACAATTTAATACCCTAATACATACATTGAAAGTAGGATATTTTAACGAAAATGCTACAGATTCAATGTTGGAAAATAATAATACATATTCAGTTTTACCTCTATGTTTATTGGAGCAATATAATAAATACATAAATGATAATAATTACATAAAAGCAAATGAGTTATTTGTTAATACATATTTAAATAAATTTAAAGAAAGAAAAGAGTGGTATTATGATAAAAATTTAAAAATATATATAAGTTATTTTAAATATAATGAAAACATAGGATTAACTAAAGAAATAGATGACGATAATTTTATAATTTAATTTTGCAGTAAACCATATCTTAAATAAAAACGCCTAATCCTAGAAATATCAACATTTATATAAGTTCTATTTTAAAATTGAAAAACACTACTGAAGGTTTACTGCAAAATTTAAAAATAGAAGGTCACAAAACACTGGTATTTCAAAATTTGTAATTGGGG # Right flank : ATAATTTAATATAAATTCCTTCTTTTATCTTGTTTTGACCACAATATATGTACATTTTGAAATACCAAACCACAACATATAGTATAGTTCAAAATCAATATAAAATAATTTAAAAAACTTTATAAAAAGTATTGACATCATACATACATTATAATATACTGTATATAACGAAACAAATTAAAAATAATTTTAAAAAAATAAATGGGGTTGAAAAATAAATAAAACAAATAGAAGGGAAGGATATTAAATGTTAAATAATAATGAAACTTTTATATTAAGAAGAGGAGATATAGTTTACGTAGATTTAAATAAAACAGCATTTGGAACAAATCAAGGAGGTAAAAGACCATGCGTAGTTGTTGCTAATAATATTTGTAATAAACATAGTAAAAGTATTCAAATTGTTCCTATAACATCAAATTTAAATAAGAAAAAAATGCCAACACATATATACGTAAAAAAGAATAATTTAAATGGATTAGAAAAAGATTCTATAATAT # Questionable array : NO Score: 2.86 # Score Detail : 1:0, 2:0, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGTTTAATAAATATTATATTAGATATAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:86.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [70.0-80.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.27 Confidence: LOW] # Array family : NA //