Array 1 131050-131871 **** Predicted by CRISPRDetect 2.4 *** >NZ_WMOI01000007.1 Klebsiella variicola strain KP117_H NODE_7_length_268669_cov_10.175476_pilon, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 131050 28 100.0 33 ............................ CACTACGACGTCGTCGAGTGCTTCACCTTCCAG 131111 28 100.0 33 ............................ CCAGGCTGCCCGGCAAGGTATAAAGCCCGGTCA 131172 28 100.0 33 ............................ CGTGCTGGAGCTGGTCGAAAAATCGTAGGTGGT 131233 28 100.0 33 ............................ TGCAACTTACCAAAAAACAGGCGCTTGTAATGG 131294 28 100.0 33 ............................ TTACTCCTGTGAATTGATCCAGTTAATTCGCAT 131355 28 96.4 33 C........................... TGGTATTCCCAGAGCCATCGGTTATGAGGACAT 131416 28 96.4 33 C........................... TCCGGCTAAAGCTAACACAGCGAAGCTTGGCGA 131477 28 96.4 33 ..........T................. CGCTCGATGAGGTTAGTTGCCCATCGTACATTT 131538 28 96.4 33 .C.......................... TCAAACGCCGCCAGTAAGGCGATCTCCATTTCT 131599 28 96.4 34 ..............T............. TGAAGCGTAGAAAAGCAGGCAGCTTTTACCCTGG 131661 28 96.4 33 ..............T............. CAGCGAATAGGCTGCAGCGGCAACGGAGATACC 131722 28 100.0 33 ............................ CCTGCAGCTGGCCGTCGAGCTGACGGATGCCGG 131783 28 96.4 33 ..............T............. TTCATCACGTGTGAGCGGATTTGGCTCTATCCT 131844 28 92.9 0 ...................A.......T | ========== ====== ====== ====== ============================ ================================== ================== 14 28 97.7 33 GTCTTCCCCACATGCGTGGGGGTGTTTC # Left flank : TCAGCGTTGGCCAGCCGGCGACGGCGGTGATCCGCGTCGAGCGCCTGCGTCTCGACGGCGCAGCGCAGGATAATAGCCTCCAGCTCCCGCTGCTGACCAGCATGTACCTCGGCGACCGCTGGGAGTACCTGTTCCGTACCGAAGGCGACGACTTTCCGCTGCGCGCCTACGGAACGGCGCTGCGCGATGCCGAACACTGCCATCTGACGCTCCCGGCGGAGGATGTGTGGATTTTTCCGCAGAAGTAACTACGCGAAGCCACGGAAGGCAAGCATCAGTACGTCGCGCTACGTTCTGGGTACGACAAAAGCGTTTTGCGCCTGGCTGCGGGGCGGGCAGGCCAGTAGGGTATATCGGTCCTGGTCAGCAGCAAGTCGACGGTGGTGATATGGGGACATACTTTTTCGTTTGATAAATGTTGATGCTGATGCGGAAACCCTGCGGAGTGCAATTATCGTAAATCTGGTGTTTTAATACGCCGCTAAACACAATATGCTGGT # Right flank : TCGCCTTTCAAGTGACGACAAGTCACGTCTGTGCGCATTTCTCAGATGGAAGGGGATTCCTGACGTAAAGGCATCAATGCCGTGACATAGTTATCCTTAATGTAGATTAATGTCTTCGAAATTTCGTTTGGCCAGCACAGTCTCATATATTTTTTATATGATTTTACTTATAAATATTCGTGAACTATGTTTGTTCTATACTTTCTTTAGGGACATCTAAATCGTTCGAGTTTCTTACTCGTCTGGAGATATTGTTCTTCATATTAATTATTTATAACTTTTTATATTATTATTTTTGGCTTTTATCTTTAATTCAGTGTGTTGTGGATATTTTTGATTTTATAAAAAGTTATTTATAAATTTCCCGGTTTTTAGTATTAATAAAGGGCACATGTTTTTTAAGGAAAAATTCCATGAGGCGCTTGACCAGGGTTTCGCTACAAAATCAACATGCCATAGCGGCGATAAGTTTTGAGAACTGCCCAGCGAAAACCCGGATG # Questionable array : NO Score: 5.84 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCACATGCGTGGGGGTGTTTC # Alternate repeat : GTCTTCCCCACATGTGTGGGGGTGTTTC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,9] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCTTCCCCACACCCGTGGGGGTGTTTC with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.50,-10.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [58.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 140625-141565 **** Predicted by CRISPRDetect 2.4 *** >NZ_WMOI01000007.1 Klebsiella variicola strain KP117_H NODE_7_length_268669_cov_10.175476_pilon, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 140625 28 100.0 33 ............................ CGGGGTGGCCTTTAACGAGGCTGTCGCAGCGCT 140686 28 100.0 33 ............................ TATGACCCTGCCGCCTACGAGAAGCGTAAAGCA 140747 28 100.0 33 ............................ TTACTACAAATCCGGCACGTTCCATCTGGAAGA 140808 28 100.0 33 ............................ TCTCGACTTTCCCTTCCGCCGCGTTATGCAGCA 140869 28 100.0 33 ............................ TTGATGAAGGGAAATCAGTCATAATCGGTAACG 140930 28 100.0 33 ............................ TTTTAGCTATGCCTTTTACGGCTGTTCAAAATT 140991 28 100.0 33 ............................ CGATCAGCGCGTCGCCAAATACCGCCGATACCC 141052 28 96.4 33 ...........A................ TTGATCGAGCTGTTAACCGATATCCGCGAAAAC 141113 28 100.0 33 ............................ CATCGAGGGCCGCGTCCTCGCCTGGCTCGCCGG 141174 28 100.0 33 ............................ TAAATCAGCGCATCATAGCCGTTATCCTGGCAA 141235 28 100.0 33 ............................ CATTTACGGCCAGTGCCGCGTCTTTCCTGACCT 141296 28 100.0 33 ............................ CATCGATACGGTCGGCTATATCTCATCCACAGG 141357 28 96.4 33 ..............T............. CGGGGCTCACCTGCGTAGTTGTTGGCCGTCAGC 141418 27 89.3 33 .........G....T..-.......... CATGATTACCTCGTATTAGAGCGGCCGCTATCT 141478 28 78.6 32 ..............T.......G.GGCT CTCTTGATACTGACTCGGTGCCCGAGCGAGAC 141538 28 75.0 0 ..............T......T.TAGCA | ========== ====== ====== ====== ============================ ================================= ================== 16 28 96.0 33 GTCTTCCCCACGCACGTGGGGGTGTTTC # Left flank : TTTACAAAGAACGGCTCTGTATTGATTTGGCATTTTCACTCTCGAGGGAAATGGCGGGCCGCTACGATAAACACAAAGTCTCTGAGGCATTCAGAAAGCGAGTGATAGCCCTGGATTTGCTCAACCTGATTGCGGCCGATATTAATGAGCTGATGGGAGGAAAAGGTGCTCGTCGTACTGGCAAATGATCTGCCGCCAGCGGTCCGTGGACGAATGAAGCTGTGGTTTGTCGAACCCCGGCCAAATGTTTTCGTCTCAGGCGTCAAAGATTCGGTCGCGCAAACCGTTGTTGATTATTTGATTCAGTACACGCCTGTGGAATCAGGCCTGATGCTGTTTCGCAGTATTCCTCAACCGCCTGGCTATGAAATTCGCTACAAGGGTGAGGTCAGGAAGCCGATTATTGATATTAGTGGGTTACAGCTGATTATTGAAACCCTAAAACTGTCGTAATACGTGGATATAGTGGTTAAATTCTCGCTCTTTCACAATATGTTGGT # Right flank : ACTAAGCGGAATACTCGTATTAGAATAAATATTTTATAGCCAGCGAAACTAAAATAATTTTTAGCTAATGAAACTGTCGTTTGGGAGAGGTAGGAATATTTTATCGCGATAGAGAAGGGAACTGTTTAAAACAATAACGGCGAATGATTATTATAAAATGAAGGATAGGGAATTCATATGTTTCGACTTTACCAGCCACATGATTTAATACGCCAATTAAATCCTGAAGACTTTCAATATATTTTGACACCAGCAGGTTCGCTAAGAGAAGCGTGTATACATTACGACCTCTCCTGTGAGGCGAATGGTCACAGCCTCGCTTTTGGCCTACCGAAGGAAATATACAATTCATCTCCACATAAAAGGCCATATGAACGAAGGCAACGTAGCTATGCAGATCCTATCTACGATGAGGTAGAGCACAGGCTACAAATTGGCTGGCTTGTTGGTGTGGATATCTCCAGGTGTTGGAGCAGTGACAGAAATCCATTTTACATCGA # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCACGCACGTGGGGGTGTTTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCTTCCCCACGCACGTGGGGGTGTTTC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.50,-10.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-17] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //