Array 1 2336873-2337631 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP017928.1 Methylocaldum marinum strain S8 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 2336873 37 100.0 34 ..................................... ACTCCCGTGTCCGCGTGACCGATCAACGGCAACA 2336944 37 100.0 34 ..................................... TTCAATGTGCGGCCCCTTCGCGTACGCCTTGCCC 2337015 37 100.0 35 ..................................... ATTTTCGGCAACCAGCTCATCCGCGTTGGCGCGTG 2337087 37 100.0 36 ..................................... ACGTTATCGCACCAACCCAACCGGAATAATATCCCC 2337160 37 100.0 36 ..................................... ACGACATGCCGACCAGAACGGCAAGCAGGCAAGATC 2337233 37 100.0 37 ..................................... CGAAAAATAGCGGCCATTACCGACGGCGACCTCGAAG 2337307 37 100.0 36 ..................................... ATGCGGATGCCTGGTGCGACGGATCATCCCTATCGC 2337380 37 100.0 34 ..................................... CCTCTGCAATATTGTTGAGGATAGCTGAGAAATG 2337451 37 100.0 35 ..................................... TCAATCTGGTCCTGGCGAAAGCCCATTTCGCGCAC 2337523 37 100.0 35 ..................................... CTGAGACTTGTGACCTTCCTCGGCCAACTCGATGG 2337595 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ===================================== ================== 11 37 100.0 35 GTATCTCCCGGCGATTTAGCCGGGAGTGGATTGAAAC # Left flank : ACCGCTGAGGTAAAAGGACGTGTTGCTTCTGGTCAGTTACGATGTCTCGACGGAAACCTCGGAGGGCCGCCGACGGCTCAGAAGGGTTGCCAAGGTCTGTCTCAATTACGGCCAGCGCGTGCAAAAATCGGTGTTCGAATGCAAGGTCGAGCCAATGCAACTGGAGACCTTGAAGAGCGACCTGCTCGACATCATCAACGAAAAAGAAGACAGCTTGCGCCTTTACCGCATCGTCGAACCATTGGAAAAAAATGTCATGGAATTCGGGAAATTCAAGGCGGTCGACTTTACGGACACCTTGATCGTATGACTACCCTGCCGATGCGCGAACCTGAAGCAACGGTAATAGACCGGCAAGTTCGCGCAAACGATAAAATCTTGATTTTATTGCTATTTTGTTCGGAATACCCCTTATTTTGTCTCGATTCCAGGCTTTCCATCCTCCGATTCGCGCTTTCCTGCCATTTTTTCCTGGTTTATTCTTGCTTTGCCGAAAGGCT # Right flank : CAGTTTATAAAACTCATCGGCCCACACTTTTGCAGTAAACGTCCGTTGCTCCCCGAGTCCATACGGATGGGTATCCCAACCCGCGGTTTATAGTTTCGGTGTGATGTACTGTCGGCAGGTATCGGCTTCATTGAGTTGCGGCATGTATTCCCCTATCGGAAAGCATGAGTTCAATTCTTATTTTTCGATTCCCATCCTAGTGCTTAATCGCGCTAATCAGCGAATACAAAAACCCACATATAATCAATTTGTTATATTGGATTTTTGCATCGTTTATTTTTGCAATTAAGCACTAGCTAGGGATTAAACGGTGCTATTCTCGGAATTCCTCCGGCCATTTCCGAGCACCGTGGTAAACAGCCAAGATTTCGATGCAGTCCTGACGTACACGGTAAGGCAGAATGTAGGGGGAATCGCCCATTACCAGTTCCCGCGTCCCGGTGACTCGGTCGGTGCGGCCGAATCCGGGATTGTCTTGAAGAAGCGCAACGCGTTGCCGG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATCTCCCGGCGATTTAGCCGGGAGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [8,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-15.30,-14.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [51.7-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.37 Confidence: HIGH] # Array family : NA // Array 2 4478718-4478397 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP017928.1 Methylocaldum marinum strain S8 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ===================================== ================== 4478717 36 100.0 35 .................................... GCCGCTTCCCCTGCGTTGTCGCCAGCTGCTCCTTG 4478646 36 100.0 37 .................................... GCGGAGGCATGCCACGGTCGTCTTCGCGCCCTTGAAC 4478573 36 100.0 34 .................................... TTCAGATAAGCCGCAAGTTCTGCGGGATTCATCT 4478503 36 97.2 35 ...........C........................ TTCGACATCTTTTCGTCTGGGGCAACTTCATTGAT 4478432 36 86.1 0 .............................CCC.AT. | ========== ====== ====== ====== ==================================== ===================================== ================== 5 36 96.7 36 GTTTGAATCGAGACCTGATAAAGAAGGGATTAAGAC # Left flank : GCCGGAGTTCGTGCAAGCTCTCCGGGAGCAGCGGGTCACGCCGCATGTCGCCCGGAAGGAAAAAGGCTCCGCCATCGATGGCCGCACCACCCGACACGCCGGCTACCGGACCAGCCTGAAGAGGCGCAAGCGGGTGGAAGAAATCTTCGGGTGGTCGAAGACCGTGGGCGGGTTACGCCAGACCCGGTTCCGGGGTTTGAAGAAGGTGGCGGCCCAGACCGTGTTCACTTTCGCCGCCTACAACCTGACCCGGTTGGGTGGGCTGTTCGGCTGGCGATGGTCGACGGCCTAGGCGGGCGTCTGCCCAAAATTCGCCGAAAGGCGGCAAGAACCCCCAAGCGGGGGGATGAAAACCGGCTAGAACCGGGATTTCAGAGCTAAAAGGACCTTCAGCACTAAAAATTAAGCCGCCGATAAGGGGTAAAGCCGAAGGCATGGAGGCGAATTTCAACAGCCTGTTAAGACGCGAAGCGCGGCATCGACATCCCGCCAACTGTGGT # Right flank : GGGAAAAAACCTGGCATTTCGTCAAACACCGAGGGGAAAAACCGTAGATTGCGACGAACGAAGGAAACCGCCCTTCTACGGGCGCGGGACAGACATCGTTCGAGAACGCCATCGGTGCGGTTCGTGCCTCACCGCACCCTACGGGCCGTAGGCTGTGGTGAGCAAAGCCGCCCGCATCATTCGCCGCTGCCGAGCACACCGAATCACGCGCCGGGTCGTCGCGCCTCACCCAACCAAAGAAATGACATGCCTCAATGACGCGGCGGTCCTTGTTGCGGTTTTCACCGGCCCGGCGTTGAGGCATCATCCGCTGCGCGTGTCAATTCTGAGAGGGAAAAATCACGATGAGACTGAAACGCCCCGAGGACCTCGAATGGTCGGACCTGCCGAACATCGAGCATCCCTTCTTTGCCCGTTCGGACATCGAATGGGCGTTCCTCGATGACGACGAGCCGGACCGCATCTGGGACCTCGACGACGTGCTGGCCGACCTGTTCGAC # Questionable array : NO Score: 2.90 # Score Detail : 1:0, 2:0, 3:0, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGAATCGAGACCTGATAAAGAAGGGATTAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.00,-3.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [50.0-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 3 4480662-4480136 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP017928.1 Methylocaldum marinum strain S8 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ==================================== ================== 4480661 36 100.0 34 .................................... GTGGAGATCCGCCCGGGTTGCCGCCGGCGGGACA 4480591 36 100.0 34 .................................... GTCGTAGTCTGCGGAAACCTTAGCGTCTGCGGCG 4480521 36 100.0 33 .................................... ACGAATTCGTCGGCGAATTCATCCGGTATTAAA 4480452 36 100.0 34 .................................... CTTCCGCGCTCTCTTAATTTAATCATCGTGTTCA 4480382 36 100.0 36 .................................... CGTTGAGTCGAACAAGTGCAGCATGGGATACGCGGA 4480310 36 100.0 33 .................................... ACGAATTCGTCGGCGAATTCATCCGGTATTAAA 4480241 36 100.0 34 .................................... TGTATTTGTAGTCCCCATTCATCCCCTTCCGCAG 4480171 36 94.4 0 .................................C.G | ========== ====== ====== ====== ==================================== ==================================== ================== 8 36 99.3 34 GTTTGAATCGAGACCTGATAAAGAAGGGATTAAGAC # Left flank : GATGTTTCGCGGCTACCGGCCGACTGGCCCGAGGGACATTGGCAAACCCTGCTCCGCGCCGCCTTCGGCCATGCCTTCGACTGGCTGGGTTTCGGCGCCAAAACCGCGGTAGGATATGGCGCGCTGAGACGCTCCGCGAAAGCCGCCGAACCTGAACTTGCCGCAGTCGAAGAAGAGATTTGGGAAAACGCCGGGGTGTCCTACAACGTGAGCACTCGTGAAATGATTGCCGAAACGACTTCCCAAAGAGCCGTCCGGTGTGAGGCCAAGGCGTTGTTCGACGCGTTGGGATCGAAACGCCGGCAGGACAAGGCGAAAGCCAAGGAATTGGTAGCCCGAGTCAGAGTCCGTTTGCAAAACGGAACCGCCGAATTGCTGGAGATTCTTCCCGCATGAAGACCCGAAAACGGCCATCACTCGACGCTAACTTTTCGGTGAACGGATTTTTCTACAACCCCCTTTGTAAGCCATTGAATATGGAGGTGTTTTAGACGCGAGCT # Right flank : GCTGTTGATTTTCTCGGCCCCGGAAGCCGCATGAATTCGTTGGATGGATCGCATAAAATAGGCATAACCGATTGTTTGTCATGGCAAAATGATATCATTTCAAGATACTTTGGACTCTTTCATGCGCGGCGCCGACATCACCCAGCAAGAACTCTTCAGCTACCGAACCTTGGAAGACCGGATTCCCAAGGATCATCCCCTTCGGAAGCTCCGGGCCGTGGTCGACATTCTGCTGACCACGCTGGACTCGGAATTTGATGCCCTCTATGCCCGGACCGGCCGGGAATCGATTCCGCCGGAGCGGCTGCTGCGCGCCAGTCTCATCCAAGTCTTGTTCTCTGTCCGCTCCGAGCGGCAGTTGGTCCAGCAGATCGAATTCAATCTTTTGTACCGCTGGTTTGTCGGGCTGACCCTGGATGCCGAGGTCTGGGACCACTCCACCTTCAGCGCCAACCGGGATCGGTTGCTGAACGAGCGGATTTCCCGGCTGTTTTTCGAGC # Questionable array : NO Score: 3.22 # Score Detail : 1:0, 2:0, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGAATCGAGACCTGATAAAGAAGGGATTAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.00,-3.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [51.7-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 4 4924200-4920200 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP017928.1 Methylocaldum marinum strain S8 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ============================================================================================== ================== 4924199 29 100.0 32 ............................. ATGTTGACATGTAGACAACTGCGGTTGTACGA 4924138 29 100.0 32 ............................. TCATAACGACGAATCTGCGGCATGTATAGAAA 4924077 29 100.0 32 ............................. CATTGAGGACCAAGAATCGGCTGGCGAATCGG 4924016 29 100.0 32 ............................. CCATTGAGCTAATGCGTAGTCGGATGATATTC 4923955 29 100.0 32 ............................. GGGCCGCACATTGAATACATGATTAAACGGCC 4923894 29 100.0 32 ............................. CGCGTTTGGCGTTTTCTAAATCCACCTGGTAT 4923833 29 100.0 32 ............................. TTAGTGTTGGTGATAGTTCCGTTGGCGCACAC 4923772 29 100.0 32 ............................. CAGGATACGGAGAGTACGACTGTTCTAAAATC 4923711 29 100.0 32 ............................. TCCAACAACCTGTTCGGGGAGTGGGTTAAAGA 4923650 29 100.0 32 ............................. AAAAGCGTTAGACGACAAGTGTCCCTTAAGCC 4923589 29 100.0 32 ............................. CCATTATGGAAGCCATTCCCTACTTACAGGAG 4923528 29 100.0 32 ............................. AGCCTAAGCTTTATTTTCCGCACCAGTTAGAT 4923467 29 100.0 32 ............................. CAAATGCAAAACGAAAACACACGTAATCTTAG 4923406 29 100.0 32 ............................. GGCGGCAAGAAATGATGATCACGGTCGCCCAC 4923345 29 100.0 32 ............................. GGAGTCGGAAATTCATGAGCGTGAAAGAGAGC 4923284 29 100.0 32 ............................. CCCTTGACGTTCGAACTCATCAATCATCCTCC 4923223 29 100.0 32 ............................. ATTGCCAGCAATGTTGTTTCATCCTCCGGTGC 4923162 29 100.0 32 ............................. CGGCACGCGGCGCCCTGACGTCCTGGCAACCG 4923101 29 100.0 33 ............................. CAACGATCGGGCAGTCCGCGACGCAACAGACCG 4923039 29 100.0 32 ............................. ATGCCCTCGACCAGATACACCTCGTCGCCGAC 4922978 29 100.0 32 ............................. CGCATCATGAGTCAAAGCACGGCCCGCGATCC 4922917 29 100.0 32 ............................. ACATTCGACGGGGAGGTATTCATTGAATTCGA 4922856 29 100.0 32 ............................. GGCCATGTATGCCGCGCCGTCCATCCAATCGT 4922795 29 100.0 32 ............................. TTCGGGAGCAGTACCGGGAGCAGTTCCGGGCC 4922734 29 100.0 32 ............................. AGAGAAGTCGCGCCGCTTGATCGGAATCGGAC 4922673 29 100.0 32 ............................. CGGAGGGGTTAGCGATCGTAACCGGAGGCCGA 4922612 29 100.0 32 ............................. GCGCTCCTGGCCGCCCTGGAGGACGGCCGGTT 4922551 29 100.0 32 ............................. CCAGGCAAGTACCAGATCGGCGGCCGTTACAG 4922490 29 100.0 32 ............................. AACTTTTTCGTCTCTCAAAACGGCGGTCGAAA 4922429 29 100.0 32 ............................. AAATCGACATGTATGCGTCGGTCAATGGCGCA 4922368 29 100.0 32 ............................. ACGGGCATCACGGCGAAGACGTCCAAGCCGCC 4922307 29 100.0 32 ............................. CACCCGTAACGGGATGATAGATTTCACCAAAC 4922246 29 100.0 32 ............................. GGTCATCGCGGTTACAAAGCGTTGCGGGCTGC 4922185 29 100.0 32 ............................. AGCCAGCACGTTTTCAGGTTTATGCTCTTTCA 4922124 29 100.0 33 ............................. TTAAACACAACCGTGATCCCTCACATCAACTTA 4922062 29 100.0 32 ............................. ACATTCGACGGGGAGGTATTCATTGAATTCGA 4922001 29 100.0 32 ............................. ACAGATGATCGCTAGATAATCTGGGCTCGGGA 4921940 29 100.0 32 ............................. CTCAGCGTGCTAGACCGCCTATCCCCGATGCT 4921879 29 100.0 32 ............................. GAAACGGGGCGAAGGCGCGCATGTTCGACTTC 4921818 29 100.0 32 ............................. TCCATCGACTCCACCAGCGCAGCCATCGCCAT 4921757 29 96.6 32 ...........G................. CCATGGTCAGGTACCTCCATCGTGGTCCAGGG 4921696 29 96.6 32 ...........G................. CCTGCCCGGAGCAGATCCGGGCAACCACCGGA 4921635 29 96.6 32 ...........G................. AACCGTGGCATGTGCTCGTCTTCAAAGCGGCA 4921574 29 93.1 32 ...........G................T GTCGTCCTGGTGTTACGACGCGGATGGTAAGC 4921513 29 96.6 32 ...........G................. GACACCCCGGAAAACCCAGCCGCGAACGCGCC 4921452 29 96.6 32 ...........G................. CAATCCCAACGGTCGGGAAATCGACAGTCAAC 4921391 29 96.6 32 ...........G................. CAGTGGGATGCGTCCGAAATCCGGATGCTGTA 4921330 29 96.6 32 ...........G................. TGGGGCCACCGTCGAGCAAATTAACCTGGACG 4921269 29 93.1 32 ...........G................A CGCTCGAAACCGTTACGTTTTTTCCCTGACGC 4921208 29 96.6 32 ...........G................. GCACTCCGATATATACCGGGTGGTATTCCACT 4921147 29 96.6 32 ...........G................. TACCTCCAAGCGACGCAGTGGGGCGCGCTTAG 4921086 29 96.6 32 ...........G................. CTGGCCGAGGCGCTGGATGTCATCATGGGGCG 4921025 29 96.6 32 ...........G................. GCCGAGAACGTTGTCGCCGTCATCAACCGGCT 4920964 29 96.6 32 ...........G................. CCATGCACAGCAGGAAGCTCCCCCTGCCGGAT 4920903 29 96.6 32 ...........G................. CGGTAGGCCGTCTCGCGGTACTCCGAATCGAC 4920842 29 96.6 32 ...........G................. GACTCGGTTTCGAAAGACGGGGATTGCGTTAA 4920781 29 96.6 33 ...........G................. CGGGCGCTTGGGACTCCGTGCGCTCGGACTCGC 4920719 29 96.6 33 ...........G................. CGGGCGCTTGGGACTCCGTGCGCTCGGACTCGC 4920657 29 96.6 32 ...........G................. ATCCGAATGACCCGCCTCAAACGGAACCGACG 4920596 29 96.6 32 ...........G................. GCCTATGCCAAGGGCCCGCACGTGGAGTACAT 4920535 29 96.6 32 ...........G................. GACCGCCTAAGTTCCGGCAATCTCCGGCTGAA 4920474 29 96.6 94 ...........G................. GGTGGTCTGTTCCACGGCACCCCAAGGACACCTCCCTGTGGCCTCAGCCAGCCCGCCCGTCCGGGGCGGGCGTTCGCGGCTCCTAAGCCCGCCG 4920351 29 82.8 94 C.CAC......G................. GGTGGTCTGTTCCACGGCACCCCAAGGACACCTCCCTGTGGCCTCAGCCAGCCCGCCCGTCCGGGGCGGGCGTTCGCGGCTCCTAAGCCCGCCG 4920228 29 82.8 0 C.CAC......G................. | ========== ====== ====== ====== ============================= ============================================================================================== ================== 64 29 98.2 34 GTGTTCCCCACATGCGTGGGGATGAACCG # Left flank : GCGATCGAAGAAATACTCGCCGCCGGCGGCCTGGAACCGCCGGAGGCACCGGAAGACGCCGTCGGCCCCGCCATCCCCAACCCCAAGAGTCTCGGCGATGCTGGTCATCGTGGTTGAAAACGTTCCTCCCCGGCTGCGCGGCCGCCTGGGCGTGTGGCTAGTGGAAATTCGTGCCGGCGTTTACGTCGGCGATTTGTCGAAGCGCGTGCGCGAAATGCTCTGGGCGCAGGTCGAGGCCGGCCTCGGCGACGGCAACGCGGTGATGGCGTGGTCCACCAACACCGAATCGGGTTTCGACTTCGTAACCCTGGGCAAGAATCGGCGCATGCCGGTCGAACTGGACGGCCTGAAACTGGTGTCGTTTTACCCGCCCGAACCGGCCGACGGGGAGGGGTAAGATGCTCTTTAACAACTTGGATTTTTCGTTTTCAAAGCGGCGATTGGCCGGTAGAATTTTGACCGGCGTTTTTTGCTATTTTTAACAAAGGGTTAGAAATGGT # Right flank : GGTGGTCTATTCCACCCCACCTCAAGGACACTTCCCTGTGGCCTCAGCCAGCCCGCCCGTCCGGGGCGGGCGTTCGCGGCTCCTAAGCCCGCCGCTCACCCCCACGTGCACGGCGAAAGCCGCCCGAAGGGTGCCGTACAAGAACGGTCCGGCATGATTCCGGACGCCAGGGACGAATGGAGCGGATCACATCCTTGTGCCCTGGATGCCGGCATTTCCGGTTTTACAATGCCTTTCCGAGAAGACAGGGCGCAAAACTCCAAACGATGCGGTTCGTGCCTCACCGCATCCTACATGCTGCCACCATCATCATCGCCGAATTCTGCCGGAGGGAAAAACTGCATTCCGGGTGCTCCTTCGACGATATTCAGGACGGGCTCGCCCTCGGTCCGCGCGCGACGTTTCCCACACGCCTCGTGGCGCCGGTGCGCGTCGCCCACGCGCCGAGAAGGTTCCGGGGTGCTTCCGGGGTAATGCCATCGGCTTGCGTCCTTCGAATT # Questionable array : NO Score: 6.02 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:-0.14, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCACATGCGTGGGGATGAACCG # Alternate repeat : GTGTTCCCCACGTGCGTGGGGATGAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCACATGCGTGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.60,-11.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [35.0-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 5 5940521-5939793 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP017928.1 Methylocaldum marinum strain S8 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ================================== ================== 5940520 36 100.0 32 .................................... ATGGAAACCGTTCGAAAACCAATATTTTTCTT 5940452 36 100.0 33 .................................... CAACCATGCGTCAACATACCCCAATACCGCCAC 5940383 36 100.0 34 .................................... CGAAGTCTGGAGGGCGTATTCATCGCCCTTCCGG 5940313 36 100.0 32 .................................... TGATCGCGGGGGCCAGGTACATCGCACCGTTG 5940245 36 100.0 34 .................................... GGAGCCCTGCAATGCTATTCACGTTCGCCATACC 5940175 36 100.0 34 .................................... AAACCGTTTCCGGTTATGTTCCTTCCCACATTGC 5940105 36 100.0 34 .................................... TCCTTGGCCATTGGGCTCTTAGACTTCCGGATGG 5940035 36 100.0 33 .................................... ACTATTCGTTCTAGCTGTCTGCGCTAGCTTTCG 5939966 36 100.0 33 .................................... GGATGCTTTGCCGTGCTGCCAGCACAACAGGGC 5939897 36 100.0 33 .................................... ACAGCACGCTCATGCTCCCGGTCTGAGAAGATG 5939828 36 83.3 0 ............................G.ATCC.T | ========== ====== ====== ====== ==================================== ================================== ================== 11 36 98.5 33 GTTTGAATCGAGACCTGATAAAGAAGGGATTAAGAC # Left flank : AGTCCGGCCACCGACAAACGTTCCCGGCTCCAAGGCGAGATTTTGAACCTGCTGAGGCAACATCTTCCCCACGGACGGGTATTGTCCGAGTGCAGCGTACAAACCTCCGAGGGCGTAAAAGTGGCCGACGCGGTTTGGGCCAGCGCGGAGTTTTTCGCCCACCGCGGTTTGGCCAATCCTTCCCCGGAAGCCCCTGAAATCGTGGTCGAAGTGCTTTCGCCGTCAAACGGCCGGGCCGAAACGGAGGAAAAGAAGGAACTTTATTTCGCCCGTGGCGCGCGCGAATTCTGGGTGTGCCGGGAAGACGGCGAAATGCTGTTCTACAACAACCACGCCCGGCTCGAACACAGCACCCTGGCGCCCGAATTTCCGACCCGTGTCGAGTTGCCCGCATGACGCTCCGAAAATCGCCGTCGCTCGACGCTAACTTTTCGGCAAGCCGATTTTTCTGCAACCCCCTTTGTAAACTATTGAATATGGAGGTGTTTTAGACACAAGCC # Right flank : AAAGAACATGAATAAAAAAGCCGTAGGATGCGGTGACCGGAGGGAACCGCATCGTTCCCGTTCTCGACCGATGCGTCTCCAATCGCAAACGGTGTCTTCGGGAGCGCCGAAGCCACCCTTCCAATCGCAAACGGTGTCTTCGGGAGCGCCGAAGCCACCCTTCCAATCGCAAACGGTGTCTCCTGGAGCACCGGAGCCACCCTTCCAATCGCAAACGGTGTCTCCGGGAGCACCGGAGCCACCCTTCCAATCGCAAACGGTGTCTCCGGGAGCACCGGAGCCACCCTTCCAATCGCAAACAGTGCCTTCGGGAACGTCGAAACTCGAAAGATGCGGTTCGTGCCTCACCGCATCCTACGGTCTGCCGGTCGTGGCGGATTTGAACCGAGACCGCATAACGAAAAGCCTTCCACGGGAAAGCACATGAAAAAAGCCGAAAGCCGGGGAGTATTCAAAGCGGCGGGATGCGGATGCGTTGACTTCAGGGAACCGGTCTTCGA # Questionable array : NO Score: 3.19 # Score Detail : 1:0, 2:0, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGAATCGAGACCTGATAAAGAAGGGATTAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.00,-3.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [48.3-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.05 Confidence: HIGH] # Array family : NA // Array 6 5955548-5954394 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP017928.1 Methylocaldum marinum strain S8 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ==================================== ================== 5955547 36 100.0 35 .................................... CAAAAGTAACGGAACGCTTCGGAAACCGTCCCGAA 5955476 36 100.0 34 .................................... CTGCATACTCCATCGTCTTAACCTTACCCTTGAA 5955406 36 100.0 32 .................................... ATATCCCTCAAACCGCTCCCCGCACACCGGGC 5955338 36 100.0 34 .................................... GGCCCAGAGCCGAGGAAATTCTTGATCATGGCAT 5955268 36 100.0 33 .................................... CAAAAACTTTGTACTCAATCCCTGAGTTTTTGG 5955199 36 100.0 32 .................................... GTTGGGTAAAGATTTATTCATCATAGACTGCC 5955131 36 100.0 35 .................................... CAAAAGTAACGGAACGCTTCGGAAACCGTCCCGAA 5955060 36 100.0 34 .................................... ATCTCGATCTGATCGACATCAACGTACTGGTCTT 5954990 36 100.0 34 .................................... GTAATCGCGGCGCGGGCTTCTTCGATGGTGTCGT 5954920 36 100.0 34 .................................... TTCGTCTTCTATCAAAGTGTCGCAAAAAACCAGC 5954850 36 100.0 34 .................................... CCTGCCGGGCCGAACGCCGTTCGCGTTTCAATAT 5954780 36 100.0 35 .................................... ACCGACGTGTTGTGGAAGGTGTTTACTAGGGTAAT 5954709 36 100.0 32 .................................... TCTTCCAACTCGGCCTTGAGGAACCGGTTTTC 5954641 36 100.0 34 .................................... ATTCGCTTCGGTTTGTAGTTTTCGGCCATCTTTC 5954571 36 100.0 34 .................................... ACCCTTTCCCGAACTCTTTTCAAAGCTTCCGGAC 5954501 36 100.0 36 .................................... GCCTGCAAGATGGCCCGGATCACCGAGAGTTTTTGG 5954429 36 86.1 0 .............................CCC.AT. | ========== ====== ====== ====== ==================================== ==================================== ================== 17 36 99.2 34 GTTTGAATCGAGACCTGATAAAGAAGGGATTAAGAC # Left flank : GAGGGTCGGAAAACAAAGTCGCCTTCGTGATGGCGGTGCAAACCACGGATGACGGACGTCCGTTATTTGTGCGTATCGATCCCCTGCCGTTCACCCAGCAGGCGATTGCGGAGTGGGCTCAACGCGCCTTAGCTCCGTCGACTTATGCACTCACCGATGGTTTGAGCGGGTTTCGGAGCTTGCAGCACGTCGTCGCTCGCCACGAATGCCTGATTCTGGGCTCTGGGCGGCAGTCGGCACAACATCCTGAGTTTCGTTGGGTTAACACGTTGTTGAGTAACCTGAAGACCGCGATTTCCGGTACCTATCACGCGTTCAAATTCGAGAAATACGCCAAGCGGTATCTGGCCGAGTTCCAATACCGTTTCAATCGGCGTTTCGATCTCAAAACGCTGCTTCGCCGGCTAGCGCACGCTGCCGTATTCACTCCACCTCGCCCCGAGTGGCAACTTCGCTTAGCTGAAGTTCATCGCTAATCAGGAACATTTTTTACCAGCTCA # Right flank : GGGAAAAAACCTGGCATTTCGTCAAACACCGAGGGGAAAAACCGTAGATTGCGACGAACGAAGGAAACCGCCCTTCTACGGGCGCGGGACAGACATCGTTCGAGAACGCCATCGGTGCGGTTCGTGCCTCACCGCACCCTACGGGCCGTAGGCTGTGGTGAGCAAAGCGGCCCGCATCATTCGCCGCTGCCGAGCACACCGAATCACGCGCCGGGTCGTCGCGCCTCACCCAACCAAAGAAATGACATGCCTCAATGACGCGGCGGTCCTTGTTGCGGTTTTCACCGGCCCGGCGTTGAGGCATCATCCGCTGCGCGTGTCAATTCTGAGAGGGAAAAATCACGATGAGACTGAAACGCCCCGAGGACCTCGAATGGTCGGACCTGCCGAACATCGAGCATCCCTTCTTTGCCCGTTCGGACGTCGAATGGGCGTTCCTCGATGACGACGAGCCGGACGGCATCTGGGACCTCGACGACGTGCTGGCCGACCTGTTCGAC # Questionable array : NO Score: 3.22 # Score Detail : 1:0, 2:0, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGAATCGAGACCTGATAAAGAAGGGATTAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.00,-3.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [50.0-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 7 5956957-5956635 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP017928.1 Methylocaldum marinum strain S8 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ===================================== ================== 5956956 36 100.0 35 .................................... AACAGAGCCAGGCCGCAGTACCACTTCACGCGCCA 5956885 36 100.0 37 .................................... CTGCCGGGGTGAGACCTTGGTTCCCTCGGTCGGCTCG 5956812 36 100.0 35 .................................... GCACTTGAACGAACGTAACCGGGAAAGATTTGAAG 5956741 36 100.0 35 .................................... GAGACCTCGTCGGGGATATAGAAACTTTCATACCC 5956670 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ===================================== ================== 5 36 100.0 36 GTTTGAATCGAGACCTGATAAAGAAGGGATTAAGAC # Left flank : TTTCCAGGCCGGAGTGACGGATGCAAGTCTGCGTCCCGGCGAATTTCACTTTAGGCCGGGCGACACCGACCCCGCGACGGCGGGAAGCGCTGAATAAACCCTCTCCCTCTGGGACAAATCGGCACGACTGCCGATTGACTCGCTTCATCCCTGAGGCTCGCCCTTCGGGCCGTGCTTCGCACGTTCCCGTTCGCTCCCGGCGAACGGGTGCACGCGTGAGCGCCGCTTGCGGCTCCGCAAAGGGAATGTGCGGAGTGATCGGCTTGGGTGAGGGCCTGCTGGATCAAGCGGTTGCACAGGTCGCTTCTCCCAATTGGACACTTAGTCAGAGCTTCCTTAACGGTGGCAGCATGGCAAAAGCCGTGTACACTTAGAATGCGGCGGCCCGTTTTTTTGAACGCGCCGTAAACCCGGATCGCAACGCTAACTTTTCGGTGAACGGATTTTTCTACAACCCCCTTTGTAAGCCATTGAATATGGAGGTGTTTTAGACACGAACC # Right flank : ACAAGAACCAGCAGTAACATTTTCCTGATTAGCGAGAAAGTTCAGCACAGGCTCACGTGGTGAGCGAGTATAGGCTTTAGACTATGGACATCGATCACAAGAGAGGTGTCCCATGTCAATGAACCAAGTGCAATTTCAAAAGGGATTGTCGTTGGCCGAGTTTCTGACCCAATACGGCACCGAAGCACAGTGCGAAGCGGCCTTACAAGCTCTGCGGTGGCCGGACGGTTTCCGTTGCCCAGCCTGTGGCGAGGCACGGCATACGGTATTCAAACGAAATGAGCGAACCTACTGGCAATGCGGACACTGCCGAAAGCAAACGACGTTAACCGCCGGGACGCTCTTCGAAGCGACCAAGCTGCCGCTCACCACCTGGTTTCTGGCGATGTATCTCCTAACCCAGGCCAAGAACAATGTCTCAGCCTTGGAGTTGATGCGTCATCTCGGAGTGTGTTATCGCACCGCCTGGCTGATAAAGCACAAGTTGATCCAGGTGATGG # Questionable array : NO Score: 3.06 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGAATCGAGACCTGATAAAGAAGGGATTAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.00,-3.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [53.3-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.37 Confidence: MEDIUM] # Array family : NA //