Array 1 284538-285857 **** Predicted by CRISPRDetect 2.4 *** >NZ_MKPG01000011.1 Listeria monocytogenes strain NRRL B-33665 PROKKA_contig000011, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 284538 29 100.0 37 ............................. CTTCTTAGTTTTGCAAGTGTTGTTGTACACGTATTAC 284604 29 100.0 36 ............................. AAATGGTACCACAGAAACAATTGATGTGGGCGTTGG 284669 29 100.0 36 ............................. GTGATATCCGTTTTACTAACTTCAACATCCCCTTTT 284734 29 96.6 36 A............................ CGCTTCAAGTTCTCTTTTGCTAAAAATCCATGTCTT 284799 29 100.0 35 ............................. TAGACCTCGAAAGAGCGTTAGCGCTTTTTGTTCGC 284863 29 100.0 35 ............................. TCGCGATTCATGTAAATCATTCGATACGTTTGTTT 284927 29 100.0 35 ............................. GTGGCTTCTTTTAAAGCATTGTATTTTTCCGTATT 284991 29 96.6 35 ..............A.............. TGGGAAAGAATAAGATTACCAGCTATTGCCAAAGA 285055 29 100.0 36 ............................. CCGGAAGATTTAGCAGTGGATCCATTTCCGTTTGAA 285120 29 96.6 36 ..............A.............. ATACCTTTTGCAACTTTAAGCAACCGTGATTGGAGT 285185 29 96.6 34 ..............A.............. TTTCCATTTGCACCAGATTCATAAGTTCCGTTGT 285248 29 96.6 35 ..............A.............. TTGTCATCATATTTAAAAACTTTTATTAACTCACT 285312 29 100.0 36 ............................. TCGATATAACACATATATTTAAAATCATTAAAACTA 285377 29 100.0 34 ............................. ATTTTTAACATAAAAAATAAGCCTACTCGGCTTT 285440 29 96.6 36 ..................A.......... ATGTGTAATTTTATTGGCTTCATTGATTAGTGTTTC 285505 29 100.0 37 ............................. ACTACTTGATGATAATGTTGGCGCTATGTCGTGTTTT 285571 29 100.0 34 ............................. TTCGGTCTAGCATAGACTAATGCGCTAGCGCCAG 285634 29 96.6 36 ..............A.............. CCGGAAGATTTAGCAGTGGATCCATTTCCGTTTGAA 285699 29 96.6 36 ..............A.............. ATACCTTTTGCAACTTTAAGTAACCGTGATTGGAGT 285764 29 96.6 37 ..............A.............. AATCGTCACGATGGGAAAGTCGTTGATAGCGCGCCAC 285830 28 82.8 0 ......A........CA.-....A..... | ========== ====== ====== ====== ============================= ===================================== ================== 21 29 97.7 36 GTTTTAGTTACTTATTGTGAAATGTAAAT # Left flank : GGCGTCCGTGCCACTACTTCAGCTGACATTTTACTTGAAAAAGGTGCCGTAGAAGTTATCGCTTGCGCAACCCACTCCGTCATGGCTGGAAACGCAACCGAACGCTTACAAAACTCCAATATCAAAGAAGTCATCACATCCGACTCCATCGATCTTCCAGAAGACAAGCAATTCGACAAACTAACAACCATCTCCATCGGACGAATCTTAGGCCGCGCAATCGAAGGCGTACAAGAAAACCGCTCGTTGCATCCGTTGTTTTAAAGAATAAGCAGGAAACAGTAACTTAGTAGAGTTGCTGTTTTTTGTTATCTGTCGACCTTGAGTAGTGCGAAAAACACCGGGGATCGACAGAAAGTTGTAAGTGGCTGGGGGAAGGGAAGTTTGGCGGTATTTGCTTGGGGAAATCTTCCGGATAAGAGGAGATTTTAGATGTTTTTTGGTAGGTCGACAGAAATAGCTCTTTGAGGTAAGATGGGAGTAAGAAGAAAAGTTAGCGG # Right flank : TCCCATTCAGATTTAACTCCACCACCATCCATCAAAACCCAAAAAAACGTGACTGCCAAACTCGCAGTCACGCTTTTTCTCAATCATTAAACTCTTTCAAAACATCCTCTTTAATTTCAGTATAATTGGTTACTTCCTCTTGCTCCTCGGAAATAAAATTATATGCTTCCACTTCTCCCAAATTCTCGAAATCGGTAAGCGTAGCGTCTGTTTCTTTCAAGTCTTCATTAAATTTGCCGTAGCCCATGCTGATAATCGAACTTAGTTTTTCGCTGTCATGTCCGCCGCGTAAAAATAATGTGTATTCTTGCTCTTGCTCAAGCGCGATATAGTTTTCAATGGATTCATACGCACCTTCATTTAAATACCAAGGCTCTGAAACGTCAATTTTGTCGCCTTTTTTGAAAGTACCTTTGTAAGTTTCTAAAACTTCGACTTCACTTATAGTGCTGCTATATTCCATTTTTTCTTTATCGTAATCGCCAATTTTCTTATTTTTC # Questionable array : NO Score: 6.00 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.85, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTTACTTATTGTGAAATGTAAAT # Alternate repeat : GTTTTAGTTACTTAATGTGAAATGTAAAT # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: F [matched GTTTTAGTTACTTATTGTGAAATGTAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.20,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], //