Array 1 146094-147323 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP016753.1 Leptotrichia sp. oral taxon 498 strain F0590 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================== ================== 146094 37 100.0 34 ..................................... TTATTTTTCACATATGTATAATGTATATCTATTA 146165 37 100.0 38 ..................................... CTAAATCCATAAACATCGGTTTTCCATCTTTCCTTTTA 146240 37 100.0 41 ..................................... TTTTAGGAATATCTTTCATACTGAATGTACCGTGCTCTCTT 146318 37 100.0 36 ..................................... AGACTATCTAAAGAGTTTAAAGCTATACCAGCAGAT 146391 37 100.0 35 ..................................... GTATAATCTCTTTTTTCAAAGTCAATCTTTCCTTT 146463 37 100.0 38 ..................................... TTATCTATATTTGTAGATACTTCATAATTTGTATTTAC 146538 37 100.0 38 ..................................... TTTTTCTTTTTTTCCTAATCCAAACATTTTTCTACCTC 146613 37 100.0 37 ..................................... TATTACACAGATGTACCGATTTATTTAATGGTTAATT 146687 37 100.0 36 ..................................... ACATTGGTTTAGAATCCCAAATACCATTTTTAGTAA 146760 37 100.0 37 ..................................... CTATTCAACAGTATCAACAACAACAAGGACAAGTACA 146834 37 100.0 40 ..................................... TTAAATTTCCAATCTAATGTTAATGTATTTGTAGGTATTA 146911 37 100.0 41 ..................................... GTTCTTGGTACAGAGTTGATATCGTATAATTTCACTTTCAT 146989 37 100.0 41 ..................................... GTTCTTGGTACAGAGTTGATATCGTATAATTTCACTTTCAT 147067 37 100.0 42 ..................................... CTTTCTCCTTTCCGATAGCACTCTGCCATCGGTGTAAAGAGT 147146 37 100.0 34 ..................................... CCATAATTTTTAATTATTCCTTTAATTCTGTAAC 147217 37 97.3 33 ....................................A CTTATCCAATATGGATCTATATTCCCATAGTCC 147287 37 89.2 0 ........................C......AA...A | ========== ====== ====== ====== ===================================== ========================================== ================== 17 37 99.2 38 GTTAAAGTAGTGAATCCATTAAAATAAGGATTGAAAC # Left flank : TATTATTCATAAATATTTCTCCAGTTATTTTATTGTAATTAATTAATTAATTTTATCACAATTTGATAATTTTGTGAACCAACTATTTTTTGCTTAATAGAGTAAAAATTTTAGAGGTATATTTTTAGTTTAAATTTATTTTTAATTAAAAAATGTTATTCTATTCAACATTATTTTAATAATTTTATGGTTTAGATAAAGGGACTCAAAGCAGAATTTTTATTTATCTCTAAATATTTTACTCCGTCCAAAATCAAAAAAAATTTTGAAAAAACAGAAAAATATGGTAAAATAAGTTTGTAGAAAAAGTTACTACCACTACAAGAAATAAAAAAATGCTGATAAAATCCATTCAAAGTCAGTAAAAATAGGGATTAGGAGTTACGGAAAATACTAAAAAAATGGCAAAAAATAATAAAAATTAGTCAAAAAATTGCAATTTTAATGTCTGAAAAAATCTCTGTAACATTGATAAATAAAGGATTTTCTCGAAAATACAG # Right flank : ATTTTAAAATATTTAAGTACAAATAAAAAAACTCTATTTTGAGTTTTTTTTATTTTTTTATTCAATCCATAAAATTACTAAAATAATATTAAACAGAATAACATCTTGTAATCAAAAATAAATTAAAACTAAAAATCTTTTCTAAATTTTTCCCCCTATCTCTATCCTATTTGATGTTCAAAAAAAATTTTCATCTTTCTTTATTGACAAAGGAGCAAAAATGATATATAATTATATTTAAATATGAGCCTTTCCCACAAAGGACCGTTATCCGAATAAAATTTAATTGAAAAAAATAGGAGGATGAAGTGAGTAAATACACTAAAATGCAAAAAAAAGAAGAAGTTACAAGAAATTGGTATGAAATAGATGCCGAAGGAAAAATACTTGGTAAAGTTGCTGCAGAAATCGCAGTAAGACTTATGGGTAAACATAAACCAAGCTACACACCACATGTTGATGGAGGAGATTTTGTTATTGTAACAAATGCTGAAAAAATC # Questionable array : NO Score: 9.22 # Score Detail : 1:0, 2:3, 3:3, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAAAGTAGTGAATCCATTAAAATAAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.97%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.90,-3.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [75.0-90.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.64 Confidence: HIGH] # Array family : NA // Array 2 1309513-1310360 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP016753.1 Leptotrichia sp. oral taxon 498 strain F0590 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================== ================== 1309513 37 100.0 37 ..................................... CATTTCTATTTTTATTAAAAAACCATTCTTCACTAAA 1309587 37 100.0 38 ..................................... AGAATTTAACAATGGGTATTCGTCTTCTCTTTTATCTG 1309662 37 100.0 36 ..................................... ACTTCAACGTCGTTGAAAATATCGTCTAGGCTTTCA 1309735 37 100.0 36 ..................................... GATCATTCCGATTTATTATGTATCGCTGACGATCTG 1309808 37 100.0 36 ..................................... AGTTGTATTGTAATAACTCTAGATTGATTTGGAAGT 1309881 37 100.0 38 ..................................... CTAATTGATAGAATTATATATGTACTGAATGCTTTATT 1309956 37 100.0 36 ..................................... ATTCAGCCGCCTATCAATCAGCCGCCATCTTAGTAG 1310029 37 100.0 36 ..................................... TCTTTACCCATCCCCAATACTGTTATTGTATTCATT 1310102 37 100.0 40 ..................................... AAGGTAACGATAGATACAAAGCGATAGAAGTATATAACCA 1310179 37 100.0 35 ..................................... TGTATTCGATATGTATAAATCTTCTTTTTATTATA 1310251 37 100.0 36 ..................................... AATAAATTTTGTATCGGGTGTCATTGTGGCACTCAA 1310324 37 67.6 0 ...G..A..A.AAT..T.......T..A...AA...A | ========== ====== ====== ====== ===================================== ======================================== ================== 12 37 97.3 37 GTTAAAGTAGTTTATCCATTAAAACAAGGATTGAAAC # Left flank : AATAGTTGCTCAAACTGTAGCGGGATCAGCAAAAATGCTTCTTGAAACAGGAAAGCATCCAGGACAGTTAAAAGACGAAGTTTGCTCTCCATCTGGAACGACAATCGAAGTAGTCAGAGTTTTAGAAAATGGAAATTTTCGTGGAAATGTAATTGAAGCGGTTGTAGCTTGTACAGAAAAGTCGAAAGAAATGGCAGGAGAAAAGTAAATTTACAAAGAAAAACTGAATTTTTTGTTTAGTTTTTCTTTTTTTTATAAAAAAATTTTGAAAAAAGAGAAAAATATGGTAAAATAAGTTTGTAGAAAAAGTTCCTACCACTACAAGAAATAAAAAAGTGTTAAGAAAATCCACTCAAAGCCAGTAAAAATGAGGATTAGGAGTTACGGAAAATGCTAAAAAAGCAACAAAAATTGAAAAAAATTAAGCAAAAAAAAGCAATTTTAATGTCTGAAAAAATCTCTATAACATTGATGAATAAAGGATTTTCTTGAAAGTACGG # Right flank : ATTAAAAAATATTTAATCACAGTTAAGTTATAAAACTGTGATTTTTTTTTGGAAATAAGTTAATTAGTAAAAAAAATAAGTTATAAGGATTGGATATAATTATTGTGTAAAGAATGAGAGAGAAAAATTTTTGAAATTTAAAAATAAAAAGAGTTATTTTTAGGAAAAAATAGGTTAGAGAGAAAAGGTATAATGATTTTGTAAATGAGAAAGAGAATAAAAAATATGGAGTGTGATTGATTATGACGAGTTTTAAATATTATAGAAAAAATGATATAGAAAAGAAATTGGAAAAAGCTAGATTTAGACCTTTGGATGTGATGGTAACAGGAGTAACAGGAGCAGGTAAATCGACAACATTAAATACAATTTTTAAAAAAAATGTGGCAACGGTTGGTAACGGTGTGGATCCTGAAACAATGGATTTAGATTCTTATTCGTTAAATGATGTATTTAGATTGTGGGATACTCCTGGATTAGGAGATGGTGTTGCGAATGAT # Questionable array : NO Score: 9.12 # Score Detail : 1:0, 2:3, 3:3, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAAAGTAGTTTATCCATTAAAACAAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.97%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.80,-2.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-12] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [73.3-83.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.64 Confidence: HIGH] # Array family : NA // Array 3 1931451-1930812 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP016753.1 Leptotrichia sp. oral taxon 498 strain F0590 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================== ================== 1931450 37 100.0 42 ..................................... AGACGGTACTTTCTTTTACCATCAGTATAATATATTTCGAGT 1931371 37 100.0 37 ..................................... ATGATTAAGAACATTCTTTTAAGAAGTTTATTCAAGT 1931297 37 100.0 40 ..................................... ACGCCCAATAATTCGGACATACATTACAATCATCAGAAAA 1931220 37 100.0 39 ..................................... GTCGTCCTTTAGTTGTTTCTTTTGATACTGAATATACTC 1931144 37 100.0 37 ..................................... TTCTCACTAATCTTGTGTTATTTGCTCCTGCTTTTTT 1931070 37 100.0 38 ..................................... AAAAACTTTCTCTTTGTTTCCTTCATAGATGTAACCTG 1930995 37 100.0 37 ..................................... TTAATCTGAGCAATCTCCTTGCTGCTGAAATCTTTTA 1930921 37 100.0 36 ..................................... AAATCTCTGAATTGAGTTATGTTTGAAACAATTTCA 1930848 37 91.9 0 .............................T..A...T | ========== ====== ====== ====== ===================================== ========================================== ================== 9 37 99.1 38 GTTGAAGTAGTGTATCCATTAAAACAAGGATTGAAAC # Left flank : CGTCATATTCCATATCTGAAATAATTGGATTATCTTCGTTGTAATAAAGATTATTATATTTTTCAATTTTGTTTTTCAAATTTGTATAATTTTTTAATATTTCATTATCAAGTGAGTTCATTTTTTCTTTTTCCTTTTCTTTTTTGATTTTTTTTATTTTTAAATTTAGTATATCATTTTTTGAGAAAATTATAAATAAAAATTTTTAAAGAGAGAAATAGAAAATGAAGTTTTTTATTTATCATAAAAAAATTTAAAAAAAATTTTGAAAAAACAAAAAAATATGGTAAAATAAGTTCGTAGGAAAAGTTCCTACCACTCCAAGAATTAAAAAATAAGGAGAAAAATCAACTCAAAGTCAGTAAATATAAGGTTTAGGAGTTACGGAAAATGATAAAAAAACATCAAAAAATGACAAAATTTAAGCAAAAAAATGTGATTTTAATGTCTGAAAAAATCTCTGTAATACTGATAAATAAAGGATTTTATTGAAAATACGG # Right flank : TATTATTCGAATATTTTTATTAAATTAAAGAAAGTGTAAGAGCTTTCTTTTTTTAATTAATGATAAAATAAAAATATATTGATTTTTAAAATTATATTTTGTATAATAAAATATATGCTTATAAGCAAAGAAAGGAAATTAAAATGGGAACATTATTTAAATTATTTTTTTCATTTGCAAAAATGGGACTTTTCACATTTGGTGGCGGATACGCTATGCTTCCAATGATAAAAAGGGAAGTTGTTGAAAAGAATAAATGGGCTACAGAAGATGAAATTATGGATTATTATGCGATAGGACAAGTAACCCCTGGAGTTATTGCAGTAAATACGGCAACATTTGTAGGACACAAAGTGAAAGGTCTTATCGGATCTATATTTGCAACGATGGGAATGATTGTTCCCCCTATTATAATTATTACTTTGATTGCTATATTTTTGAAAAATTTTTCCCATCTGATGGTTATAAAATACGCTTTTAATGGAATCCGTGCGTGTGTC # Questionable array : NO Score: 9.21 # Score Detail : 1:0, 2:3, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAAGTAGTGTATCCATTAAAACAAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.90,-1.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [85.0-76.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.91 Confidence: HIGH] # Array family : NA //