Array 1 2712-5128 **** Predicted by CRISPRDetect 2.4 *** >NZ_QUBG01000003.1 Apilactobacillus micheneri strain HV_63 scaffold_2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================= ================== 2712 29 100.0 32 ............................. AGATCTACTAGGAACTCACGAAATTAATGCCA 2773 29 100.0 32 ............................. GATTAAATCATCATAGTTTACTTTGTCCTTAT 2834 29 100.0 32 ............................. TGATCAAAGGTGTATCCGTTCATAATCAGCCA 2895 29 100.0 32 ............................. AGCCCATTTTGCTAACGTTATTTCTCCCAGCA 2956 29 100.0 32 ............................. TCAATAGTTTAGACGATCAAGTCTTTAAGTTA 3017 29 96.6 32 G............................ TTATGCTAGAACAACTAAAATTAGTGATGTCA 3078 29 100.0 32 ............................. TAAACAATAATTTTTCCTGTTAAATTACAAAT 3139 29 100.0 32 ............................. GTTTTCTAACATTATCTAATGATTCTTTACTC 3200 29 100.0 32 ............................. AATCATTAGTCAACATTAAAAGTAACCGTACA 3261 29 100.0 32 ............................. ATACCAACTTTACAACTTACTAATATCAAATT 3322 29 100.0 32 ............................. TAATGCAAAATAGGGGACTTAAAACTTCGTAA 3383 29 100.0 32 ............................. GGCAATAATAGTTCACTAAAAAAGTAGTTTTT 3444 29 100.0 32 ............................. ATTCATCTTTATCTACATCTGCTGATAAGATA 3505 29 100.0 32 ............................. GAATTATGATCCTAATTACTTTTCTATGCTTT 3566 29 100.0 32 ............................. AGGAGGTATGTTTTCTAATTTGAGTAATTTAT 3627 29 100.0 32 ............................. TTGGACTATTCCATCTGGTGGACCAACGATTG 3688 29 100.0 32 ............................. TGTCCAGAACCGCCTAACTTGGATAGAATCCA 3749 29 100.0 32 ............................. ATAATCGCTTAGCTTCCTTTTTCTTATCCATG 3810 29 100.0 32 ............................. TTCTTAGCCCACTCGAAGAACACATCAGATGA 3871 29 100.0 32 ............................. AGAATCTAATGATAAACCAGTCATATATGATA 3932 29 100.0 32 ............................. ACCAGATCATTAGCATTGTTTTTATCAGCACC 3993 29 100.0 41 ............................. CGCTAAGACTACCTAGACTTTCTTTAAAGCCTAGTTGAGCC 4063 29 100.0 32 ............................. CTGCCAATCGTATCAACATGGTCTACGTCTGA 4124 29 100.0 32 ............................. TTAGATTTAGATTTTTTAATTTTAGCCTGTAA 4185 29 100.0 32 ............................. CTGAACACATCGATAGATTCATAGAAGAAGAT 4246 29 100.0 32 ............................. ATACGATAATAAATCCAGTAATGTTAATCTTT 4307 29 100.0 32 ............................. TTACCACTTGCCTTTCCTGCTGAACTTGAAGA 4368 29 100.0 32 ............................. ATTTATAAATTGAATCTTCCCTTTTGCTCATT 4429 29 100.0 32 ............................. TTAATTTTTGTTCGGCCAATTGTTGAGCGTTC 4490 29 100.0 32 ............................. ATCGCAAACTTTATCATCGTTCTGAGTTACCC 4551 29 100.0 32 ............................. TTAACATATAATTACATATGTTTTTTATATTA 4612 29 100.0 32 ............................. AACCATTTCTGCAGCACAACGAGGCAAAATTT 4673 29 100.0 32 ............................. TGTTGTATCTAAAGGTGATACAGTTGGATTTA 4734 29 96.6 32 G............................ CATCTTACTAAAAGTTATCAATACTCATACTT 4795 29 100.0 32 ............................. ACCTAAATCAATTTTGATAATTCTTTTTATCC 4856 29 100.0 32 ............................. AAAATTACTTTTACATTAATTAACATTATGAT 4917 29 100.0 32 ............................. AATTTTTGTGTTTGCACTTTAGCGGTATCCAT 4978 29 100.0 32 ............................. ATTAAGTTGTTTTGTCAAAGTTATTACTCCTT 5039 29 100.0 32 ............................. TCCATGTCTGGAGATATGGCTTTTTTAGTAGC 5100 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ========================================= ================== 40 29 99.8 32 AGAATCACTCCCGCGCATGCGGGATATAC # Left flank : CCCAATCCACATCATCGCCACCTAATAAATTAAACATCGCAATACAACATAGAATGAAGAAGATTAATTTCCACATTCTAAAAATCAAACCAATCCCATTACCGAAAAATGATAGTAGTTTTAAGAAATCCATATGTATCCTCCAAGATTAGTTTATAAAAATTAAGTAAGAAATGTTATTAGTGCATAGCCAAAAAAGAATAATAAAATTATAGAAATAATTATTCGCATTAGTTTCCTCCTTGCTTATATATTGAAAATCAATTATCTAGCCATTGAAATTCCTGATAAAACCAGCATAAATAAAAGTAACCCTGTTAGTATACATATTGCAATAGAAATTTTTCTAAACCTTGTTTTGAAGAAAGATATGATCAAAAACAAAATAAATATGGGAAAAATGATTAGGGTCATGTTAACGCTCCTTAGTATTAAGATAAATTTTTTTCCTGCGCATGCGTGATATACTCAACGCTCTTTTTTTATGTTCTGTTTTATTT # Right flank : CACTTGGAAAATGCCTATAGATCAAGACTTCTTTTTTATTTTCCTGGAAAATCCATTCACTTTTATTGATAATAATTTAATTAATTTACAATCAAGAAGAGCCCGATGAGGTACTTCATCAAAAATTTCATAATCATGTAGAACTGTTTCTAGCTTATAATTATTTAAAAACATTTTTTCTTTTTTGACTAACGGAATAATATCTACAATATTATTATTTAAAGGTTCCAAACCAAATTTCTTTAAATTATAATTCAAGAAGTCGATATCAAAATTAATATTATATCCAGTTAAAACTTTATTGCTAATAAATGCTTTGAAATCTTTAAGGATTAAAAACAATTCTTCGCCATGTTCGTTTAATATTTTGTCATTTAAACCTGTTAAATTTTTAATTTTAGATGGTAATAAAGAATCATTTTTGATTAAATGATCAAAATATTCTTCACCATTTTTAGAAACTTTTAAGGCTCCAATTTCAATTATATTATTATCCTTAA # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AGAATCACTCCCGCGCATGCGGGATATAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-10.90,-11.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [1-1] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [68.3-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0 Confidence: MEDIUM] # Array family : NA // Array 2 17987-15272 **** Predicted by CRISPRDetect 2.4 *** >NZ_QUBG01000003.1 Apilactobacillus micheneri strain HV_63 scaffold_2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 17986 29 100.0 32 ............................. AATAATTAATATCTTCTTTAGTAATGTTCTTT 17925 29 100.0 32 ............................. GCTTTAGACAAAAAAGGTCATGAGTTTTTACA 17864 29 100.0 32 ............................. TCAAAGCGTCTCCAAATAATCCTAATAATTTA 17803 29 100.0 32 ............................. TTTTACGTCCAATAAGTAAAGTGGCTTTTTCA 17742 29 100.0 32 ............................. AAATTCCGTTAACTCGGTACAAGGCTAAGTGA 17681 29 100.0 32 ............................. TTAACTTCAATTACAAATAACTTTGAAGAAGT 17620 29 100.0 32 ............................. CAATACCTAGCTTTTGTAAATCAGCATTGATT 17559 29 100.0 32 ............................. AATTTCATCTCTAAGAACTCTATTAAAGACAT 17498 29 96.6 32 ............................C GCCATTATGCCAATGATTCGGTTGAAAATAAA 17437 29 100.0 32 ............................. ATGAGTGCAGAAACCAAATTATTTAAGGTTCT 17376 29 100.0 32 ............................. AGTATTTGAAATTAAGTATGTTGATCCACATA 17315 29 100.0 32 ............................. TGAAAAAACAAAAAGTAGTTTTTAAGGGATTT 17254 29 100.0 32 ............................. GAAATGCGCAAGCAGGGTGAAAAATATTCACT 17193 29 100.0 32 ............................. GACCTCCTAAACGGTAATCATTGCCATCGGTA 17132 29 100.0 32 ............................. AGTATCCACATGGTCAATATCAGCACCAGATT 17071 29 100.0 32 ............................. AACGCTGAAAAAATATTCAACTGGTTTTTTTG 17010 29 100.0 32 ............................. AATAGCAGGTGTTCCTTCACTATTTTGTGTAA 16949 29 100.0 32 ............................. AGAGCCAAAAGTATTAGCAAAAATATTACCAG 16888 29 100.0 32 ............................. ACACCTAGGGCTGCAGAAGTTTGTCCAATGCT 16827 29 100.0 32 ............................. ACAATGGCTTGGAAAATAAGTATTTTAAAAAA 16766 29 100.0 32 ............................. AATATTATCCAATGTTGATAAGTTGTTATTAT 16705 29 100.0 32 ............................. TAGTAGAAAATATGTTTGGAAGATTTCATAAT 16644 29 100.0 32 ............................. ATACCAAGTATAACTGGTATTGGAGTAGATGC 16583 29 100.0 32 ............................. CGATATGAATTAGTGGCATTTTGAGCATTCTG 16522 29 96.6 32 ............................C AGGCGAAGTAATCGCATTAAGTGGTGCGAATG 16461 29 100.0 32 ............................. TCATTGCTCATAGGATTTAAGCCAGCATCTTC 16400 29 100.0 32 ............................. ATTAAAAACTATAGTAGAAACTAACAAGAATG 16339 29 100.0 32 ............................. CCAGTGCCATATCCAAAGTTTTCTGAAATGTA 16278 29 100.0 32 ............................. AAAAATGTACGCATATATTGACAATAACAATT 16217 29 100.0 32 ............................. ATGTTTACCAGTTTCTTGAACTAGCATTATCA 16156 29 100.0 33 ............................. TGCTTCATTTCAAGCCAATTTAAAACTTTATAT 16094 29 100.0 32 ............................. AACGCTGAAAAAATATTCAACTGGTTTTTTTG 16033 29 100.0 32 ............................. AATAGCAGGTGTTCCTTCACTATTTTGTGTAA 15972 29 100.0 33 ............................. TAAGTCACATATTTTATCTAGCAAATCTAAAGG 15910 29 100.0 32 ............................. ACAGCCAGTGGTGTTTGTCTGGACAGATTGGC 15849 29 100.0 32 ............................. TACAAGCTAACATCCCTGCTAAGAGTATTAAG 15788 29 100.0 32 ............................. TCATAATTAAATGTTGGTCGTATAGACATGTA 15727 29 100.0 32 ............................. CCAACTTTAATTTCTGAAAGAGTGTCATATTC 15666 29 100.0 32 ............................. TGGTACGATAATTTTTATCGAATTATGAATTT 15605 29 100.0 32 ............................. CAGAACTCATTTGCCTGTCAATTCGTTGTGAT 15544 29 100.0 32 ............................. TACAGATGATAGTTTAAAAAACTCCTCATTTG 15483 29 96.6 32 ............................C GATGATCCTGATATTGCTCATTGGGTGAAAGT 15422 29 100.0 32 ............................. TATCATCCCCAGCGTTAGGCACATCAAAGTCA 15361 29 100.0 32 ............................. TATTTGCAATATAATTTTATCGGTCATTAATG 15300 29 96.6 0 ...........................T. | ========== ====== ====== ====== ============================= ================================= ================== 45 29 99.7 32 GTATATCCCGCAGACGCGGGAGTGATTCT # Left flank : GCACAAGTAATAAACTTGTCCCCTCATATATGTAAGATATATTGAAACGAATCCTTAGCTCTTATATAATAACTAAGGAGCGTTAAAGGTTAACAAGTAGTCCGATTACTTTGTTAGCTGGTCGATAATTACTGGTAATAATTGTCGATCAACGCTCTTTTTCTATGTTTTATTTTTAGTATGTTTATAAGTATAGCGGTTTTTGGGTGGGGTGTAAATAAGAAGATTTTATATTGATATAACATTATTAATCATATAAAATAATATTTGTAGCATAATATGCTTCTTTTATTTAATTTTCAATAAACTCATCACAAGATAATCTATATTGATTGTCTTTTCTTTATTACATTAAGTGGTCATGAATTAAATTTCATGGCCACTTTTTTATTTTAAATAATTATGTATGAATAAATAATTATTAATGTTAATATAATAAAAGTAAATGTAATTTGCATTTATTAAAAATGTAATTGTTGTTATATCAGCTTTTTCTAAGT # Right flank : TTTGACGGTTACGGAAATCAAAGCGAAATAGAGTATATCATATATAAATGAAAGGAGCTTTAATTTATGAGTTTACATTTAGAGTGGTTAATACCTATGATATTTGTTTTATTCTTTGATTATATTGTATTTTTTAAAATCATGAAGTGGAAATAATATTTGAATTTAATTGATTTGCATTAAAATTACAAGCGTAGTTTTAATTCTTTATTCATATTATTTGTATTTAAAATTTATTTATTGATTGGAGAAGTATATGGTAGACAAAATTTTATGGGCTAAAAAATCTTTAGGTAATGATGGGAATCCTAAATGGTTGCCCTTATATCAACATTTATTAGACACAAAATTTGTGATTCATATGTTATATAGATTTTATTTGAGTGATCATCAAAGAAATATTATAAAAGAGTCTTTGGAGTCTTCTTTCAGCAATTCAAATGAAGAAAATTTGATTCAATTTATTGGTATTACACACGATATTGGTAAAGCTACACCTG # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATATCCCGCAGACGCGGGAGTGATTCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-10.90,-11.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [68.3-80.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.68 Confidence: LOW] # Array family : NA //