Array 1 93-1898 **** Predicted by CRISPRDetect 2.4 *** >NZ_LFXF01000029.1 Campylobacter fetus subsp. testudinum strain D6659 contig00030, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 93 30 100.0 36 .............................. AAGTAACTACGCTCTTGATAGCTTTAAGGCTCTAGG 159 30 100.0 37 .............................. TTCGGCTAGGTCTACCGTTGGCATTACTTTAAAATTT 226 30 100.0 35 .............................. GAAAGATACTTACCATTAGGAGAATAGTCATTGCT 291 30 100.0 35 .............................. GAAAGATACTTACCATTAGGAGAATAGTCATTGCT 356 30 100.0 35 .............................. ATGTCAGAGCATTTATAAAAGCCTAAATTAGGCTT 421 30 100.0 36 .............................. TCCAAAAAAATGCTAAAGCTTTCACTACTTGGAAAA 487 30 100.0 36 .............................. TTTCAATCCACTTTAAAACTCTATTTTTAAAAAACT 553 30 100.0 36 .............................. TTTGCAGACTGCTGTCGTCCAGCTCTGAAATTTTTC 619 30 100.0 36 .............................. TTGTTAAGTCCCAAAAATCCGGACTTTTAGTAATAC 685 30 100.0 36 .............................. TCAAAATTCGCCGTATCTTTGGAGTTTGGCGGTTCT 751 30 100.0 37 .............................. AAATTTAGCAGGTTTTATAGGACATTGCGTTGTGGAA 818 30 100.0 36 .............................. TTGATGAAAATGGCGAGAGACTTTTAACAAAGGCGG 884 30 100.0 36 .............................. TTGATGAAAATGGAGAGAGACTTTTAACAAAGGCGG 950 30 100.0 35 .............................. TCTTGGCTTCCATTCCAAAAGACCACATTAGCCAT 1015 30 100.0 35 .............................. AGGCTTAATACAACTTTTAGCAATATTATTATAAA 1080 30 100.0 35 .............................. TTTTTAAATCAATATTCTTATTTTTAATTTCGCTT 1145 30 100.0 36 .............................. GCGGCATCTTTAATGGCTTTTTTATATGTGTCTAAA 1211 30 100.0 36 .............................. GCAAATTCTCTAGAAATAGAAAATCTTTTTCTACTC 1277 30 100.0 36 .............................. CTTTGAGCATTAGTAATACTCTTAGAAGTAGTAAGA 1343 30 96.7 35 ...............G.............. GCTGTTTTCATCTTGTCTCCTTTTTTTCTTAAAAT 1408 30 96.7 35 ...............G.............. ATGATACAAAGCGTGGTTGGTAGATATTATATTTC 1473 30 96.7 36 ...............G.............. TCATAGAATGTGTTTTTATTGTACTTTCTAGCAGGT 1539 30 96.7 35 ...............G.............. TAGCAAACGCACTTTTAAAGGCTGGAGACGCTATA 1604 30 100.0 36 .............................. TAGTTAGATTTGCGTTCTATTTTATAGATAGTAACG 1670 30 96.7 37 .........................T.... TTTTATATCTAAAATCATCGCTTAAATGACGTTTATC 1737 30 96.7 36 ...............G.............. AGAGAAGTTTCGAAATCGACTTCTGTTTTAGCGTCG 1803 30 100.0 36 .............................. CCTTGATTTTTGTATAGAGTTGGTTTTATGTCAATC 1869 30 73.3 0 ..........C....AGC.C..A..A...T | ========== ====== ====== ====== ============================== ===================================== ================== 28 30 98.3 36 GTTTGCTAATGACAATATTTGTGTTGAAAC # Left flank : CAATAGTTTTAAATAGTTTTTTAAATTTATTTCTTATTTCAATTTCTAATTAAATTTCTTTTTAAATTTAATTAGATGATGAGTTTATTATGG # Right flank : TCACATAGAGCTCCAAAGTAGCAACATTCAAAATGCTAAAAACATAAATGAGAAAAAGGCAGCTTCTGCGTGGAGAAGTGAGCCTTTTTATGGTAAAATACTTCCAGCAAACTTTGGGCTTCCGCCGTATCATTTTCGTTGTAGAACTGAGCTAGTACCAGTATGGATAGATGAAGAAGAGATCGACGGTGTAAAGATGAAAAATACAAGCCCATTAAACAAAGATGAAGCAGTTAAGCACATAGACAAAACTGGCGTTGAGAGAGTTTGGAAAAAGAGCAATACACATATTTATGAAAAGCACGACACAGAGCCAAAGGATGTTGTAAAGGCTTTAAACTCTATAAATACAATGGCTAAAAATAAGGATAATAAATATATAAACGCCTTTAGTGACAATGGGTATTTTATAGTTTTTAATGGTAATGAGATAGTGACTTGTTATAAGCCTAGCCAAAATAAAAAAGAGGCATTTGGTTACTTTAAAAATGCTTCAATAT # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGCTAATGACAATATTTGTGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [85.0-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.68,0 Confidence: HIGH] # Array family : NA // Array 1 4382-5922 **** Predicted by CRISPRDetect 2.4 *** >NZ_LFXF01000022.1 Campylobacter fetus subsp. testudinum strain D6659 contig00022, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 4382 30 100.0 35 .............................. AAAATAAGAGAACACGAGGCCGATTGTGGTGGAAC 4447 30 100.0 35 .............................. CTATTCTTTTTAAAGCTTCATCAACATAGTTTTTT 4512 30 100.0 37 .............................. CTATTTTGCACACTCAAATTTAGCGTTTTTGGGTTTA 4579 30 100.0 36 .............................. CAATAATCTTAAGTTAAAACCAGCAATAAAACTTAC 4645 30 100.0 34 .............................. AAAATATTAAGGGTGTTCCCAGCAGAGATAAATT 4709 30 96.7 35 ..............C............... TTTTGCAGACGTAGAGGGCGATCTAATAATCGAGA 4774 30 96.7 36 ..............C............... AGCCAAACAGAATGCTAAAGAAGCGTATAGTAAAAT 4840 30 96.7 35 ..............C............... GCCATAGCGCTACCGATAAAAACAGCTATTGACTT 4905 30 100.0 36 .............................. AACAAGAAATTTATTTGAAGAGTTAGGAGAGTACGC 4971 30 100.0 36 .............................. AACACCAAAATAGGAGTTTATAAATATAGCTAATTT 5037 30 100.0 36 .............................. AACACCAAAATAGGAGTTTATAAATATAGCTAATTT 5103 30 100.0 36 .............................. ATCATTTGCTACATTTTCTTCAAAAATCTTATCATC 5169 30 100.0 37 .............................. ACACCAAATAGACCCTAACATAAAAGCAGTAATTCCT 5236 30 100.0 36 .............................. GGAGTGTCTGCAAGACGCATACATTGCAATACAAAC 5302 30 100.0 36 .............................. AAAAGGTATAGATGATATCTTAGCTGCATTAAAAGA 5368 30 100.0 36 .............................. CGTTAAAACTTCAAAGACTTTCAACGAAATTTCCGT 5434 30 96.7 34 ..............C............... TTAAAGTAGGTGCGGAATGCACGTACGCTTCTTT 5498 30 93.3 35 A.............C............... TAGCCATTTCATTCTCGTTTATAGAAGGCTTAACG 5563 30 100.0 36 .............................. TATCAGCAGAAACTAGAGAGCTGTTAGTTCTTTATA 5629 30 100.0 36 .............................. AAAAGGTATAGATGATATCTTAGCTGCATTAAGAGA 5695 30 100.0 36 .............................. ACTATCCCACGGACAAATTAGCCGCAATCTATGCTT 5761 30 100.0 36 .............................. ATCAACAAATTTAATAAATCGAGTTGTAAATATTTT 5827 30 100.0 36 .............................. AAAATTATTATTTGATGTTATAAATGTACCTGTAGT 5893 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ===================================== ================== 24 30 99.2 36 GTTTCAACACAAATATTGTCATTAGCAAAC # Left flank : AAAACTTTATAGAAACTTTGGTATAGTTGATTTCTAGCTTCATAAGTTTATGGTTTCTTTTTTGGCTATCTTTAACTCGTCGTCGTTCAGATGTTTTAGACTATCTAGTATCTCGTCGCTCTCTTTTTTATCGCAGTAACTAAGCGTAGTTAGCCTGTATGATAGCGAACCTTTGGTTTCTTTTAATTTTTGCTCTAATGCATTTCTGATAAATTCAGCCATAGTTGTTTTGCTATTTTTTACGATTTGATTTAATTGTGCAAATGTGTCATCATCTAACTTCAAGCAGTAACTTTTCATAGTTTATCCTTTTTATTTTATTATATACTATATATACTTATATATATCTTATATAAATAACCTCTTGCCTAAGTTTTCAAAATTATATTTTTTACTATTTTAATTTACCATTTGAAAAATAGTTTAATAAATTTCAGCTTTTTTTATAAAGTGTATTTTCAAGTTGGTTACTTAGAAGTGGTAGAAGAGGCGTTCGACAA # Right flank : CAAAAAAGAGAGCGACAAGATGTTTTACGAGGCTA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAACACAAATATTGTCATTAGCAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.68,0 Confidence: HIGH] # Array family : NA // Array 1 1588-507 **** Predicted by CRISPRDetect 2.4 *** >NZ_LFXF01000033.1 Campylobacter fetus subsp. testudinum strain D6659 contig00034, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 1587 30 100.0 36 .............................. ACTACAGGTACATTTATAACATCAAATAATAATTTT 1521 30 100.0 36 .............................. ATACTTGTTAGGAAATTTGACTACGCTAAAACAAGA 1455 30 100.0 35 .............................. AGTTAAAAAAATGAGAGTAAGCCGTTTTTTGTAAT 1390 30 100.0 35 .............................. AGTCCTCCATAAATGAAAACGAAATGGCTACATAT 1325 30 100.0 36 .............................. AAAACTATTTTGAGTTATATTTTATGCCTATTTTAA 1259 30 100.0 36 .............................. AGAAATTTAGTATCGATATAATCGCACCTATACACG 1193 30 100.0 36 .............................. ACTCCAAAATCCTCGCCCTGAACGCTGCTAAAAGCT 1127 30 100.0 36 .............................. AGCCGATGAGCAAAGATGTGGCGGGTAAGATACTGG 1061 30 100.0 36 .............................. GGGAGTAAAAAATATTTTAATTTTACATCCCACCCA 995 29 96.7 37 .....-........................ TTTAATTTTATGCTATCTTTTAAACTCATTTAAATCT 929 30 96.7 35 ....A......................... TTTGCCATAACTAAGAGCATATTTTTTATATTCAT 864 30 100.0 36 .............................. AGTGGGGGATATCGTTAAGCTCAAGAGCCCAACACA 798 30 100.0 37 .............................. TCTTTGCTTACAGAACATTGTATCCCTTACTCTGAGT 731 30 100.0 36 .............................. TAAGTAATGTTTTTGGTGTTGAAGATGACTATGACG 665 30 96.7 36 ...............G.............. AAGTCTGCTTTAGTGGATCAGATAATAAATAATTAT 599 30 93.3 33 .........................A..T. CCCTAATATAGCTATTAAAGGCTATCATATTTA 536 30 73.3 0 ....A.....C....AG...A.A..A...T | ========== ====== ====== ====== ============================== ===================================== ================== 17 30 97.5 36 GTTTGCTAATGACAATATTTGTGTTGAAAC # Left flank : AGAGAAGCAAGGCTTAAAAATGTTCGCAGATGGT # Right flank : CATATAGAACGCTAAAGCAGAAGATGAGCTTTTTAGACATATTGATAGTATGGGTTATGAAAAAGTTGCTAAAGCAGATATCTATACACACGGACAAAGCGGATACATTAAACCCAGTAAAATAGAACTGATATCTGCTATGAATAATATTAGCAACCTTAAAACTAGTATTAACAACCCTATAAGGCAAGTTGCATTAAGTGGAAAAATTATCATCATATATCAAGATGAGAGAATTTGGACGGTTATTAAAAAAAATAGCGAAAAACAAGCAAAAGAGTACTTTAAAAACAACACGGAGAGTAAAATATGGAAAAGCGAAAGTTATATATTTGCATTGATGAAAAAGGCTGGCATATCACAGATGATAATAAAAAAAATAGTTGGTTAAACGACGATGAATTAGATGGAAGTTTTGCAGAAGTATTTGGCGTAAATGGCAAAATAGGCTTTTTAGGAGAGTGGGCGTGGAATGATAATTTTTTAAACTTAACAAGCGA # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGCTAATGACAATATTTGTGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [11-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.41 Confidence: LOW] # Array family : NA //