Array 1 5135-3712 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABXNN010000001.1 Listeria monocytogenes strain F6212 NODE_3_length_482276_cov_42.1399_ID_5, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 5134 36 100.0 30 .................................... TGCCATCGGGCCACTATTGATGGGGATAGG 5068 36 100.0 30 .................................... TTCTGGGGACTTGTACTTTTCTTAGCAGTA 5002 36 100.0 30 .................................... TAGCCGTCCTCTTCTAAGTCAACCTCCTCA 4936 36 100.0 30 .................................... CAATAGAAAAAAGCTTCTTAGCTGATACGC 4870 36 100.0 30 .................................... GAACCTAGGTGACGAACCTAACGGAAAATT 4804 36 100.0 30 .................................... AATGCTTTGTGTGTTTCACTATTGTAATCA 4738 36 100.0 30 .................................... ATCCACAAATGTGAGCATTCCTTCTAATGC 4672 36 100.0 30 .................................... AGTGGACAAGGCGACTATTACGTTAAAAGT 4606 36 100.0 30 .................................... TCGCGAATCGGACACTATGCTGCGTCTTTC 4540 36 100.0 30 .................................... TTGCAGCTAAGAATAACAGAATGATGTTGC 4474 36 100.0 30 .................................... TGCAAACTTAAGATTATCATTGTCGGAGGC 4408 36 100.0 30 .................................... CCATGTCAATATGAAAGCCGTGCAAGAGGA 4342 36 100.0 30 .................................... TCAGAAATAAATATAATTTAGGTGAAGACG 4276 36 100.0 30 .................................... TATTATTTTTGTTTATTAGTTTATTGAATG 4210 36 100.0 31 .................................... CAGCTTTCTTGCGCGCTACTCATTTTCTTAT 4143 36 100.0 30 .................................... ATTCATGTCACAGCGACAGACAAAACGAGC 4077 36 100.0 30 .................................... CATTCGTTCTGTGCGTTCATACTTACATCG 4011 36 100.0 30 .................................... CTGCTTCTACAAACCCAAACAATAAGCCTA 3945 36 100.0 30 .................................... AAGGTTTCGGGAATAGTAACCCCAACTCGA 3879 36 100.0 30 .................................... AAAAAGCATTGGAATTGTACACATTAGACT 3813 36 100.0 30 .................................... AATGGCTAAAAAGAGGATTAAAGACTTTGA 3747 36 97.2 0 ...............................C.... | ========== ====== ====== ====== ==================================== =============================== ================== 22 36 99.9 30 GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Left flank : GACAAATTAACCGCAACGATTAGCGAGTTGATAGGTTACGAATTATTGGAGCATGAACTGGATTTAGAAGAAGATGAAATAACGGTCATTGAATTATTCAAAGCTTTAGGAATAAAAATAGAAACAAAAAGCGATACCATATTTGAGAAATTAATTGAAATAGTACAAGTTTATAAATATCTATCTAAGAAAAAATTGTTAGTACTTATTAATGTGTGTTCCTATCTTACAGAGGAAGAACTGCTAGAGTTGAGGAGGTATATCTCTTTATATCAAGTCAAAGTACTATTTATTGAGCCTAGAAAGATAAAAGAATCTCCACATGTTACTTTAGATTCTGATTATTTTTTACACATGGAAAATAGTGTATAAGGTAACCGCTGTTCTTTGAAAACAAAATAAATTTTATGTAACCCATAAAAAAGCATTCAAAATTGAAATCTTGCTATGGATGAATGGCGCGATTACGGAATCTCGGAGGAAAGAAAAAATTCTGCGAG # Right flank : CTGTTTTAACTGATTATATTCTAAATACGAGTAGGGATAATGACACGCTTGAACTATATACTGCTTGGAACAGCGAGGAAGATTTCCTGTTATTGAATAAAACAGAACTGCTGATAGAGCATTTAACTATCGAAAATTTAATTTTAAGTGACTGAGAACTATTAATAACTAAAATGAGAACCTATATAACTTTTAGCACCATCCGTTAAAAAAGGAGCCCCCAACCATGAAAAAAACCTCCATTATTTTTATTTTTTGCGCATTCCTGTTAACTGCTTGCTCAACCACTACAAAAGAAATCCCTAGACAAACCATAGAAGCTACCGGCACTATTGAACAAGTAGAAATGGAATCTGTTTTAATCAATAATATCAAAATAAAAACCAATAATAACGCGCCAGAACTGAGTGTGCGCTTCTACATCAGTGGAAAGTACCACGACGAAACGGGAAACAAAATAAAACTAACCGAACTAAACAAAAATGACAATATAAAAATCA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.80,-1.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 172908-173448 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABXNN010000011.1 Listeria monocytogenes strain F6212 NODE_1_length_724347_cov_37.2204_ID_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ==================================== ================== 172908 29 100.0 34 ............................. CCTATTAATTTCGTGTTTTTACTGCTTAACATTT 172971 29 100.0 34 ............................. ATAGAATCATCGGAAATACGTATGCCGAACTCTT 173034 29 100.0 36 ............................. CATGATTTCTTTGTCGTTCATAATAACGTATTGATT 173099 29 100.0 35 ............................. GTTTTAAAAGTACCGCAATTTATTGCTGATTGGAT 173163 29 100.0 35 ............................. GGAGGAACAGCGACCGGTTTCGGTTCAGACATTAT 173227 29 96.6 35 ..........T.................. TATTTTGAAATATCTAAAGCTATCTCACTGTTTAG 173291 29 100.0 36 ............................. GACAATGTATTATCAATTGAAGTGCTTGTAGAAACA 173356 29 100.0 35 ............................. TGTAGTCATCAACTTGTTCAAAGTATTTCACTATA 173420 29 82.8 0 ......A........CA.A....A..... | ========== ====== ====== ====== ============================= ==================================== ================== 9 29 97.7 35 GTTTTAGTTACTTATTGTGAAATGTAAAT # Left flank : GCGTCCGTGCCACTACTTCAGCTGATATTTTACTTAAAAAAGGTGCCGTAGAAGTTATCGCTTGCGCAACCCACTCCGTCATGGCGGGAAACGCAACCGAACGCTTACAAAACTCCAATATCAAAGAAGTCATCACATCCGATTCCATCGATCTTCCAGAAGACAAGCAATTCGACAAACTAACAACCATCTCCATCGGACGAATCTTAGGCCGCGCAATCGAAGGCGTACAAGAAAACCGCTCGTTGCATCCGTTGTTTTAAAGAATAAGCAGAAAACAGTAACTTAGTAGAGTTGCTGTTTTTTTGTTATCTGTCGATCTTGAGTAGCGTGAAAAACACCGGGGATCGACAGAAAGTTGTAAGTGGTTGCGGGAAGAGGGACTTGGCGATATTTGCTTGGGGAAACCTTCCGGATAAGAGAGGATTTTTGCTATTTTTAGGTAGGTCGACAGAAAGGAGCATTTGAGGTAAGATGGGAGTAAGAAGAAAAGTTAGCGG # Right flank : TCCCTTCATATACACCATCCATCAAAACCAAAAAAAGCGTGACTGCCAAACTCGCAGTCACGCTTTTTCTCAATTATTAAACTCTTTCAAAACATCCGCTTTAATTTCAGTATAATTGGTTACTTCCTCTTGCTCCTCGGAAATGAAATTATATGCTTCCACTTCTCCCAAATTCTCGAAATCGGTAAGAGTAGCTTCTGTTTCTTTCAAGTTTTCATTAAATTTGCCGTAGCCCATGCTGATGATTGAACTTAGTTTTTCGCTGTCATGTCCGCCGCGTAAAAATAATGTATATTCTTGTTCTTGCTCAAGCGCGATATAGTTTTCAATGGATTCATATGCGCCTTCATTTAAATACCAAGGTTCTGAAACGTCAATTTTGTCGCCTTTTTTGAAAGTGCCTTTGTAAGTTTCTAAAACTTCGACTTCACTTATAGTACTGCTATATTCCATTTTTTCTTTATCGTAATCGCCAATTTTCTTGTTTTTCACTAGTTTTA # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTTACTTATTGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: F [matched GTTTTAGTTACTTATTGTGAAATGTAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.20,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], //