Array 1 283912-285155 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP004392.1 Pasteurella multocida OH1905 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 283912 37 100.0 31 ..................................... TGAAAATATAACCATTTGGTTACCGCTCCGC 283980 37 100.0 37 ..................................... ATCATCTAACAAAGACAAAATAGCTTTATTACTGTTT 284054 37 100.0 35 ..................................... CGCACTGAAAATCACCATTTGGTTACCGCTCCGCA 284126 37 100.0 31 ..................................... TTTTCATGACGTCAATCTCCAAAATTTTATT 284194 37 100.0 35 ..................................... ATTAGAATTCAATTTCTCTAAAATACTCATAATTT 284266 37 100.0 33 ..................................... TTTCCAGAACGCACGGAGCAATTATTTAATAAA 284336 37 100.0 33 ..................................... GTTTATGTCGATTGGTAGTGACGGTTAATATAG 284406 37 100.0 35 ..................................... ACTGTTTGTGCGGTGTTTCCGTTGCCGGGTTGAAA 284478 37 100.0 36 ..................................... TTTTATAATATATATAATTTTTATCTACATATAAGT 284551 37 100.0 38 ..................................... TTATAAAAAATCGGAGTAATTCCACCAGAATTTAGAAT 284626 37 100.0 31 ..................................... AAATATTTGAATAATATAAAGATGAATCAAT 284694 37 100.0 33 ..................................... ATGTTCAATATTCAAGCGTTGTGATTCTGTCAT 284764 37 100.0 35 ..................................... TTAGCAGCGTCACCTGCATCTAGTCGCAAGGCTAA 284836 37 100.0 33 ..................................... TTACTTGTGGTGGAATTGTTTTACCATTTTGTC 284906 37 100.0 34 ..................................... GATGCTTTCTTGATAATTACGAAGTTTCATTTTT 284977 37 97.3 32 .........T........................... CTTTCATTTTAATACTTCTAATAGGTTCTTTT 285046 37 97.3 36 ....................................C TGTCTAAAGCCGTGTAATGTTTGTCTGTGTTTATAT 285119 37 73.0 0 A..A.........AA..G........A.A...T.TT. | ========== ====== ====== ====== ===================================== ====================================== ================== 18 37 98.2 34 GTCGAAAGACATTGCCCTGTTCCAAAGGGATTGAAAT # Left flank : ATCAACAAACATTTTCGCCAAACGTACGGGGGTTTCTTCTAAACTATCATCACGTAAATCTAACCCAATCAGCTTCATCACTTCACGCATATGTTGTTCAATCCCCGCTCGACGCGTATCTCTGTCTTGTTCTGGGGTAATCATTGGGGTTTCAATCCCCTTACTTAATAATGCGTTGCGGACTTTTTCTGCTTCTGGTGAAATCTTGTTCATGTAAAACTCCCGATAAATAATCCGCACATTCTAGCAAACTCTCGCCAAAGTACAAATGAGAATAATTGGTAGAGAGGATGAAAAGTTTTTGGCTCAAATCAATATCCATAAAATAGGCATAGGCTAAAAAATAAATATAATGTAAAATGAACACGTTCTTTGGCTAGCAGATGAGATTCAAATTGATTATTTTTCATTCAAATCAAGAGTTAGCTTTCCACTTCAATGGGAAAATTGGGAAGCCTATGTATAACATATTGAATAAAAAAGAAAAACTCATCCTCTGC # Right flank : TATGTAGCGTGGGCATACTTGCCACCACATAACCACTCTAAACTTTCCCATTCAAAAGTACGGTTATTTTTCAAAAAGTTTTACAGCTTTCTCTCTGCTTATTTCTTATTAGTATAGGCTCAATAAAAAGAGATCATCCTGCGTTTTTGGTATAAAATATTGCCCGTTAAACTCAACTAAGGATTCAATTATGTTGCCTCTTGAACAAGCACTGACTCAAATGCTCGCTATGTTGCCAACACCAGATTGTGCGCAAGCCGAACAACTCCCCCTTCAACACGCGGTGAATCGCATTTGTGCTGAGGATATCATTTCCCCGCTTAATGTGCCCTCATTTGATAACTCGGCGATGGACGGCTATGCGGTGCGGCTAGCAGATTTAGCACAAAATTTAACTCTCACGGTCGCAGGAAAGTCCTTTGCGGGCGCACCTTTTGACGGGGAATGGCAAACACAAAGCACGGTCAGAATTATGACAGGGGCAATGTTGCCGGCGGGTG # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:0, 3:3, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGAAAGACATTGCCCTGTTCCAAAGGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.76%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.50,-3.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-12] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : NA // Array 2 369796-371045 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP004392.1 Pasteurella multocida OH1905 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 369796 37 100.0 33 ..................................... ATAAATTGTGGGTATTGTTAAAATTATTTATAT 369866 37 100.0 36 ..................................... CTAATAAGTTCATAATACCCTCCCGATGAGCCAATT 369939 37 100.0 36 ..................................... AGTATTATTTCATTCTTATTTAAGACGTATGCCAAA 370012 37 100.0 35 ..................................... ATTACATTATATGTAATATTATTACGATAAAACTG 370084 37 100.0 34 ..................................... TGGTCAGATGTTCTTTTCATAGTTTTTCCTCTTT 370155 37 100.0 36 ..................................... GCTAATTCTTTTTCCAGTTCGGCAACCCTTTCTTTT 370228 37 100.0 35 ..................................... AAAATATTAAAATTTAAAATTAACGGATATCCTTT 370300 37 100.0 34 ..................................... ACTTAATTCATAATACGTTTTGAATGACGAAATA 370371 37 100.0 34 ..................................... CTATCGTACTGAACAAGCCAGACAGATTTTAAAT 370442 37 100.0 35 ..................................... CTATTAAAACAAGTCTAAAAAGAAAATTACAAGTC 370514 37 100.0 33 ..................................... GTCATTCCTGCATTCATATAGAATGAGCCGTGT 370584 37 100.0 37 ..................................... GTCGTTAATCACCGACATACCAGCTTTGATACGGTGT 370658 37 100.0 34 ..................................... CCATACTGTGCCGAGACAATGTTGCCCCATATCT 370729 37 100.0 31 ..................................... TAATTTGCTGTAATTTCCAACCAAATTGATC 370797 37 100.0 35 ..................................... ATTCAACCCAACGCATAATTGAATAATAACTCTCT 370869 37 100.0 32 ..................................... CTGAACAGTGTTCGCAGTAATGATACTATTAA 370938 37 100.0 34 ..................................... TTCGCTAAAAATAACCATTTCATTGCCTGAACGG 371009 37 86.5 0 ...............................AAC.CA | ========== ====== ====== ====== ===================================== ===================================== ================== 18 37 99.2 34 GTCTAAAGACACCGCCCTGTTCTAAAGGGATTGAGAC # Left flank : AGTTCCTGATAGTCACGCTTATAACGGACGCTATTTCATTAAAAATGGAAAAAAATGGATCCATAATATTGATGCATTACGTAAAAAATTAAATACTGATTATGGTCGCTATATTGATGATGAAGAATTAGAAGTCTCTTCTCCAAAAGGTTTCGGTTATGACGTTGTTGCCTACTACATCTATAATGCCCCAAAAAACCCGCTATTAGACTCTAATGAATTTAAAACACTAATGAAAAAAGTCCATATAAATTAAATTTAAACATAAACAGAAAAGGGGTTGAAAGCCATTCGCAAGCACGAGAAAATCACATACCATTTTGCGTTAAAGTAGATTTATTCTTCTCTTTTATATAAAATAGCAACGTCTTTTTCTGCAATGGAAATAAAATAGTTGATTAACATTTATTCAAATCAAGAGTTAACCTCTCTAACAATGCATAAAGTTGGGAAGTGCCAGCTTAACATATTAATAAACAAAGGGAAAACACAACTCTGCA # Right flank : AAACACACTATATCAATCTATCTACCAAGCTATACAAATTTGTAAAAGAGAAATCTTTTCGATATCCCACCTAAAATAAGCTTACTGATTATTTTTTCCTTACTGAGTAAATGACTAACCGAGAACGTTATTTAATTGCTTACGATATTTCTAATCATCGTCGATTAAGTAAAGTACATAGAAAAGTAGAAGCATTTTCTATTGGAGGGCAAAAATCTTTTTATGAATGTTGGTTTACAGAAAGTGAGTTGGCACTTTTTAAAACAGACATTCGTGAAATTATTGATATAGCTGAAGATAGGGTATTTATTTTTCAAATAAGTCCTCAGGCAGAACCTATGTTATTTGGGAAAGCCAAACTTCAGTCAATATCGCCTTTATTGATTATTTAATGATAGGAAAACAATATGTCTAGCTTATATATCGATCGAAAAGGTGTGGAATTAAAACTGAGTGGAGAAGCACTAATATTTTATGAGAATGGGGAAAGAATCGGTACG # Questionable array : NO Score: 3.22 # Score Detail : 1:0, 2:0, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTAAAGACACCGCCCTGTTCTAAAGGGATTGAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.35%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.50,-3.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 3 1084589-1081981 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP004392.1 Pasteurella multocida OH1905 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 1084588 28 100.0 32 ............................ AATCGGTTCAATAACGTGGCTGTCAGATGTAT 1084528 28 100.0 32 ............................ TTTTGATGTTCTCTGACTATAATTGTCACCAA 1084468 28 100.0 32 ............................ ACCAAGCAATCTCTTTTATCTAAGTGGTATTC 1084408 28 100.0 32 ............................ GTTCATTGAGACTTTCGCTGTCCATTTTTTCA 1084348 28 100.0 32 ............................ CACCACCTAAGTTTAGAAAATCGTTTTATGGG 1084288 28 100.0 32 ............................ TTTTACAAACTCAAACGGTGAAATGCCGCTAC 1084228 28 100.0 32 ............................ AGTTAAAGTGTGCAAAGAGTGTCAATGTTATA 1084168 28 100.0 32 ............................ AAAATCCTGTTCTATTGCTAGCCAATCAATGT 1084108 28 100.0 32 ............................ AGCTTAGCTCGTGCAGTGTTCAAATGATTTAA 1084048 28 100.0 32 ............................ ATGACACTAGCGCGTCAATCACTGCCGGACCG 1083988 28 100.0 32 ............................ ATTTTCTAAATCGTCCAGTTCTAAATCAGGCG 1083928 28 100.0 32 ............................ AATTTCTTTTGTTTTGCCTGTTAGTCTTGCAA 1083868 28 100.0 32 ............................ AAAATTCTTTAATCATTGCCTTAATCTGCGGA 1083808 28 100.0 32 ............................ GACAGTCGGAAAAAAATCCGAGCGACGGATTT 1083748 28 100.0 32 ............................ GCTTGATGATGTTGAACTCAATCAGCGTGTTT 1083688 28 100.0 32 ............................ TGTTCGTGTAAAAGATTTAACAGGGCAGTTCC 1083628 28 100.0 32 ............................ GGGAATGCCCACATATGCAGTAATTGACATAT 1083568 28 100.0 32 ............................ GTTAAATACAATCCCTCTAAAGTTTTCGGCTT 1083508 28 100.0 32 ............................ TTTTGGATATTCAACAATTTTTGGATGTTCAA 1083448 28 100.0 32 ............................ ACGATGGACAGCGCAGGACTAAGGCTTACTTG 1083388 28 100.0 32 ............................ TCTTCATCTGTTGCAATTAAGCGATGTATTTC 1083328 28 100.0 32 ............................ AAACGCATTGCGCACCACTTCAAAATAAGCAT 1083268 28 100.0 32 ............................ CGTGCCGAAATTGCATAAGTCTGACTTTGCAC 1083208 28 100.0 32 ............................ AACGGAAATTTTAAAAGAAGATATTGACACAA 1083148 28 100.0 33 ............................ ACCTATTCCATTTCAGATAAAAGTGGAGCGTTT 1083087 28 100.0 32 ............................ TGTTTTAATTGCTTTTTTAACAAAAGTTTTAC 1083027 28 100.0 32 ............................ TTATTATTTGGCTGCTTGGCGTATATCTAACC 1082967 28 100.0 32 ............................ ACGCTAAACCCAGAAGAATAAATTTTTCTCGC 1082907 28 100.0 32 ............................ TTTATAATGGATTAAAGCCGAGCGAAAGGCGA 1082847 28 100.0 32 ............................ ATTGCCAACGGTTGAAGAAGTGCGCACTTGGT 1082787 28 100.0 32 ............................ ATTCCGCAGGATGTGGCGGATCAAGTGCGGGA 1082727 28 100.0 32 ............................ AGTGCGTCAATCACTGCCGGACCGTTCATTGA 1082667 28 100.0 32 ............................ GGCTATGATTTTAGCGTAAAAGGTCAAGTTTT 1082607 28 100.0 32 ............................ ATTTTACCGCGCGTGAATTGTAACATAATTTG 1082547 28 100.0 32 ............................ ACGGTCCATCAGTCAATTACTGGCGCTGAACA 1082487 28 100.0 32 ............................ AACAACAATATGACAATTTTCACCATTATCAT 1082427 28 100.0 32 ............................ ATTTTAGAAGTGGTGAAATTGTGGACGGTGTT 1082367 28 100.0 32 ............................ CTTTGAGCTTACGACCGCCTGAATATACCCAA 1082307 28 100.0 32 ............................ ACACCACGACGGCACGCCGCACTGGCACTTGC 1082247 28 96.4 32 ............A............... ACTTGTCTAGCTAGACCGTGGCATTTTAGCAA 1082187 28 96.4 32 ............A............... TGTTCATTTGTCGGTAACGTGCTCACCGCATT 1082127 28 96.4 32 ............A............... TATTGCTCTTAGATAACCGAGTGGATTCATGC 1082067 28 96.4 32 ............A............... TGAAATTTTGCGAAAACTGTTGGCAAAACTCG 1082007 27 82.1 0 ............A.......T..C-..T | ========== ====== ====== ====== ============================ ================================= ================== 44 28 99.3 32 GTTAACTGCCGTGTAGGCAGCTTAGAAA # Left flank : CCATACAGCGCAGATACCTATTTGCACCGTATTGGGCGTACTGCACGCGCGGGTAAAAAAGGCGTAGCGGTGTCTTTTGTGGAAGCCCATGATTATAAATTGTTGGGTAAAATCAAACGTTACACCCAAGAATTACTGAAAGCACGTATTATCGAAGGCTTAGCTCCTCGCACCAAAGCACCGAAAGAGGGAGAAATTAAAACGGTCAGTAAAAAGCAAAAAGCCCGCATTAAAGCAAAACGTGAAGAGAAGCAAAAACAAGAGCAAAAGAAAAAAGTGAAACTGCGTCATAAAGATACGAAAAATATTGGTAAACGTCGCAAATCCAATACACTTCCAGCTAACGCAGAATAATCACATCTAAATTGCTAACCCTTTTTTCTGGCTAGATTATTTATCTAATAAGATCAAAGGGTTATTTCTATGTCTAGAAAAAGGGTTTTTAACAGTTTGATCGGCGCCATACTTGCTGAATAAAGGGATGTCGATTAGACTGTTTT # Right flank : TGACTGTTGGTATATTACTAAAACAGTTGGATATGGGGATCGGTCTGTTAGCTTATATCGTGTTTAACGATAAAAGTGCGGTCAATTTTTGGAAAATTTCATCAGCTTCAATCTTATCCATACTCTCAGCAACGAGATAATGCTGGTTTTTGCCGTAGGAGCCGATCAGTTTGGGATCCGTAGCACCATAGAGAGTCAAGTTGGTTTTATCGAGTGCGGCACTTAAATGTGCCAATCCGGTGTCAACAGAAACAACAACGCTGGCATTCACAATCTGCTGTGCTAACTCGGATAACGTGGATTTTGGCAAAATCGTCACAAGATCAAGCCCTTGGGCGATCCTCTCTGCACGCTGTTTTTCTTGAGGATTTGACCAAGGTACGTGAATTTGGATACCCTGTGCGATCAGTTTTTCTGCTAATATCCGCCATTGTCTGTCCGGTAGAAATTTATCTTGGCGTGTAGTGCCATGGAAAAAGAGGACATAAGGCATCGTTTGT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAACTGCCGTGTAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTAACTGCCGTGTAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 4 2097519-2099167 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP004392.1 Pasteurella multocida OH1905 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 2097519 28 100.0 32 ............................ TGATTACACCAATTCTTATCTAATCTGGATGG 2097579 28 100.0 32 ............................ AACACGCACACGGACACCACCTCGATACCCCA 2097639 28 100.0 32 ............................ CTGTGGCACTGCTTTATCGCGGTATGCCGCCA 2097699 28 100.0 32 ............................ TGAATACCGGAATTATCACGATCGCGCGCCAC 2097759 28 100.0 32 ............................ ACGCAAATAATCAACGAACCGATCTTCTTCTA 2097819 28 100.0 33 ............................ CAAGATTGACGATATGCGGGATGACATACACAC 2097880 28 100.0 32 ............................ AACTGATTGCGTAGGACGGAGCATACCGATCA 2097940 28 100.0 32 ............................ TGTATGCTTTCTTCTTGATACCACCTTAATTC 2098000 28 100.0 32 ............................ GTTTCATATTTCCATACAATCCATTGCTTGAA 2098060 28 100.0 32 ............................ GTCCACAATTGACACTGGCGAATTTTAACGGA 2098120 28 100.0 32 ............................ AATACACCCCTGTGCTTCAACGTTTTTAAAAT 2098180 28 100.0 32 ............................ CGTTCAATCTGACAGTCAGTATGCGAACGTAC 2098240 28 100.0 32 ............................ TCCTTATTCTAACCCTCTACCGTTCGTGCAAC 2098300 28 100.0 32 ............................ TTCCACAATTTCTCTCGAGACTGTTAATACTC 2098360 28 100.0 32 ............................ TGATAAGCCAAACGGTCAAATAGGGCGACCCT 2098420 28 100.0 32 ............................ TATCTTATCAACCAACATAAAAGGAAAACTTT 2098480 28 100.0 32 ............................ AGCAAATTCTTCAATATCTTTACCATAATCAA 2098540 28 100.0 32 ............................ TTCGGCATTTTGCGCCTGAACTAACGTTAAAT 2098600 28 100.0 32 ............................ TTCTGTTGTGACTTTAAACTCAAACGTGCGAC 2098660 28 100.0 32 ............................ AACAAGCGTTTGCGGAAACGATACGTAAACGT 2098720 28 100.0 32 ............................ GCCAAAACCATCTGAGCGCATAACACCAATAC 2098780 28 100.0 32 ............................ AAACATGCCTCGAACTTATGCAAGAGTTAGTT 2098840 28 100.0 32 ............................ ACATCAGTTACAAGGTCACGCTTAATGAGGGT 2098900 28 100.0 32 ............................ TGATCGTGATAGACACTATGCAGCAATACACT 2098960 28 100.0 32 ............................ ATTCATGAGCGTAGTGACTCAATGGAGCAAGA 2099020 28 100.0 32 ............................ TCAAGCTAGGTATTTTTTTAGGATAGTTAACT 2099080 28 100.0 32 ............................ TTATCTGAACCATAACGAGATAAGTGGTTATT 2099140 28 96.4 0 ........................A... | ========== ====== ====== ====== ============================ ================================= ================== 28 28 99.9 32 GTTCACCATCGTGTAGATGGCTTAGAAA # Left flank : CAATTACACCAACAATTATTGCGATCTGGCTTATCAGATTATGCTTTAATTAGCGAAGTGAGTAAAACGCCGTTGCCTACCGAGCACCGCAGTTATAGTCGAGTACATCGTAAAGGGCAAAGTGCCATCCGCCGTACCGAAAAACGCTTGAAAAGTCAGGGAAGATGGGATGAGTCCATCCGTGCAGACATGCAACAACGTCAGCAAAATGTGGCATTTTTCCCACATTGTCATTTAAAAAGTGCGAGCACTGGTCAACGTTTTATTTTGGCAGTGAAAGAGAACAGAATGTCGCAATCTTGTGTTGGTGTCTTTAATGCTTATGGATTAAGCAATAGCGCAACTGTGCCTCACTTTTAATCGCATTGTTAACCCTTTTTTCTTATTTGGAAAGTTTTCGAATAAGATCAAAGGGTTATTGTTCTACCCTAAAAAAGGGTTTTCTTTTCAGATGTTCTTTAACAAATTGAAATATCCGAAGATATAACAAAATTCATTTA # Right flank : AACTCATAATTGGAAGAGAGCGAGTTCGAATCGTTCATTATAGACTAGATTGTGTAAATCCTCGCCGGTTTTCAAGACCGGTGTATCCAATGCCGTTAAGCAACCTCATTTAAAGAACAGAAAAAGCCCATTATGCTTATCAGAGAATGGGCTAGATAAAAGGAGAGATTATGCGCAAAACCCCTTATATTCCGTCTTCGGATTTGAAAACCATTATGCATTCTAAGCGGGCGAATATTTACTATTTAGAACATTGTCGCGTATTACTAAATGGTGGACGAGTGGAATATGTCACCGATGAAGGGCGAGAATCGCTTTATTGGAATATTCCCATCGCCAATACGAGTTGTCTTTTGTTAGGCAGTGGTACGTCGATTACGCAAGCTGCGATGCGAGAATTATCCAAAGCGGGCGTCATGGTGGGGTTTTGTAGCGGAGGTGGTACACCATTGTTTAATGGCACAGAAGCCGAAATTGGCTGTGAGTTTTTTAGCCCACAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACCATCGTGTAGATGGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: F [matched GTTCACCATCGTGTAGATGGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.00,-5.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [78.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //