Array 1 10086-12934 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAEMFA010000023.1 Vibrio cholerae strain Vc382 NODE_23_length_37766_cov_121.333041, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 10086 28 100.0 32 ............................ AGAACTATTTTTGTTCACCATCAACTCTAAAA 10146 28 100.0 32 ............................ GCCAGAAGCGCGGCAACGGCTTAAGCATCAGC 10206 28 100.0 32 ............................ CTAACTCTACCTTGAAAAAGGTCGCGGTAGGG 10266 28 100.0 32 ............................ AGGCACCGTAAACCAAAGTTATATCGCTGGCT 10326 28 100.0 32 ............................ TTTTGCTGCATGCACAAACGGCTTATCCGCAG 10386 28 100.0 32 ............................ GCGACTAGAGCCCAGCTTACACAGCAGCTAAT 10446 28 100.0 32 ............................ TAAATAACAGAAACCGCCTCAAATGGCGGTTT 10506 28 100.0 32 ............................ TGCATGATTGATGACCTAACTATCGCAATAAA 10566 28 100.0 32 ............................ TTTCAACCCTACGTTGATTTGGCGGTATTCAC 10626 28 100.0 32 ............................ AGCTTGAGCAACCAGCACTGCCAGTTGCTCGG 10686 28 100.0 32 ............................ GATTAAAAGACGGCGATGTGGTGCAGGTTGAT 10746 28 100.0 32 ............................ ATACGCAGACAGATTATACAAAGAGGTTGACG 10806 28 100.0 32 ............................ AAAGCGTGAAAGTGGCTGGACAGAAGACAACG 10866 28 100.0 32 ............................ TAAAACAGTGGCTCAGGAAGATGGCGAACCAG 10926 28 100.0 32 ............................ GCCACCATGGGTGGAGGCGAAGCCGCCACGAA 10986 28 100.0 32 ............................ TGCATGAATATGTACTCCATGAAGGCTTTTTT 11046 28 100.0 32 ............................ TGCTGGGAAGCGATGCCCCACGAAAATATCTT 11106 28 100.0 32 ............................ ATTGGCGGACTCCACACCCGGATTCAAATTAA 11166 28 100.0 32 ............................ AACAAGAGGAATAATTTTACTCATGCAAACCA 11226 28 100.0 32 ............................ GTAAGCGGCCAATACTTCCGCTGCAATGTATT 11286 28 100.0 32 ............................ ATTAGCAGCGTAGACCGTGCAGCGCGTAAATC 11346 28 100.0 32 ............................ TAACAGTGTCAGGAAAAGAAATGAAAAATCAT 11406 28 100.0 32 ............................ GTTTCGCGCATACCATTGCGCACGCAACCGAT 11466 28 100.0 32 ............................ TATGCGTAACCTGATAAGGATTGCGGATTTCG 11526 28 100.0 33 ............................ CGCAAACTGTCGATAGATAGATTGTCGTGCTCT 11587 28 100.0 32 ............................ AGCCTAAACCGTTAATAAGCATGGTTTCGTGC 11647 28 100.0 32 ............................ AGACGAAATTACATCACCGTTTTCGTTTTCAA 11707 28 100.0 32 ............................ ATGTTGCGTTACGCGCTTTGTTTAGCGTAGTT 11767 28 100.0 32 ............................ AGTTAAAAGCGCAGTCAGCACAGCTTGAGAAA 11827 28 100.0 32 ............................ CTCAAACGAACCGCGCCCCAGCGTATTGAAGC 11887 28 100.0 32 ............................ AAGCCGCCTTGGGCAACTTGGCATTACTGATC 11947 28 100.0 32 ............................ AACCTTGACCCAAGCCAGCCGATTGACCGTAA 12007 28 100.0 32 ............................ TGCTGCACCTCACAAGTGTAGTATTCTGTTTC 12067 28 100.0 32 ............................ TGACGAAGATATTGTCGAGAACGCGCCAACAC 12127 28 100.0 32 ............................ CTCAAACTATAGCAAACTTGCTACATAAAAAA 12187 28 100.0 32 ............................ TTTGCTTATTTCATCGAATTCGCTGTTTACTT 12247 28 100.0 32 ............................ TTTGTCATGTGCATGACAGAAACAGTAGGTAT 12307 28 100.0 32 ............................ CATTGTTATGTGAAAGTATGGAATGACGAGAA 12367 28 100.0 32 ............................ TATCCGCATCGTCTGTTTAAAAATCACTGAGT 12427 28 100.0 32 ............................ GCTAAACTCTTTGTGGGTCTCTCTCTTTGGAT 12487 28 100.0 32 ............................ ACGCATACCTTTCACAGCATAGTAGCTGTCCC 12547 28 100.0 32 ............................ TGAATCAATCACCGCAGCAAGGGCGGCTTTAG 12607 28 96.4 32 ...........T................ TCAATCCACGTTGCCAACATATCTTTTGCTTC 12667 28 96.4 32 ...........T................ GTTTCTAAGGCTTGTCCTGCGCCCGACGTTGT 12727 28 96.4 32 ...........T................ AATACATGTTTGGCATCGCTAACCAGCTTTAT 12787 28 100.0 32 ............................ TTCTATGACATTCCCGCCATGAAGTAATTGAA 12847 28 96.4 32 ...........T................ TGCTTTGGGTTCCACCCAGTCAGATGGCCGTT 12907 28 89.3 0 ...........T.............TT. | ========== ====== ====== ====== ============================ ================================= ================== 48 28 99.5 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : GATGTAACTTACGTAAGCTTTGTACGCAAGCTGGTGAAATCACCCGAGCGAATAGAGCGCGATATGCAGCAAAAAGCCGAACTATGGGCAGCAAAATCCGGTAAACCGCTGGTGGAATGTTTAGCAGCTTTGCAACAAAGCAAGCCGACAGCGTTGTGTACCTTGCCCTTTATTTACTTGCATAGCCAGCAAACCAAGCAACGCTCACCAGAAAAAAACAGCAAATTCCCGCTGTTTATTGAGATGCAGCCACAAAGCACATCACAAGATGGGAGCTTTGATTGCTATGGTTTGAGTAGCAAAGCGAATGGGCAGTCAATGTTGGCGACCGTACCGCATTTTTAAATTGAACGAAAAAGGGTAGTTTTTACCCTTTATTTTTGCTCTTTAAAAATGTGCTTTTAAAACAAATGGTTGCAACGGGTGGTTTTTAACAAGGTAAAAAGATGATTTTTACCCTAACAGCTTGTTGCAGCTTATTTTTATCGGTTTATTCTATT # Right flank : AGAAAGTAAATCAAACGAGGCAGTTCACTTTATAGATTACGTTAAGGTTCTTACGTTCTGCTACGCATGTTTATTAGGGTTTTCTTAAATGGTCTTTTCACAAGCATTAGTGACAAATTTCCGAGGTGTAATGATTAAGATAGCCCAGCTGATGAGTATCAGTTGAGGGGTAGTCACCATGAGCATTGTTGGTTGTGTTAATATCAAATCCAAGCATATCGATCGAACATGTCAGATGGTCTCGTAAGTCAAATTTTACTCAGAGCGAGTTTTGCGTCAATAAAAATCCTTTAAAATCATAACGTAATGAGCTATTGGATTACATCAGCTTCCATGTCTTAAGTGGAGGTTATATTCTAGATTATTTTCAATTGCCGAGTACCAGTCACAGATAGGCTACCTTTGGCGGCCTCTTCTATATGCCCGCTCCACCAGCTCATCATTGGCTTTCTGCGTTCTAAGTAGTCAGTGCGGTTATAGGCGCTACGCACTTGGTTGTC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //