Array 1 11486-13343 **** Predicted by CRISPRDetect 2.4 *** >NZ_SIIV01000007.1 Salmonella enterica subsp. enterica serovar Hadar strain 3139 3139_7_length_240524_cov_27.2787, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 11486 29 100.0 32 ............................. AACTTAACTCCAGCATTCTGGCAATTGTTGCG 11547 29 100.0 32 ............................. GCGACATCAAAATCTATTTTTCATTCTATCTG 11608 29 100.0 32 ............................. CTCCAGCCACATTGCGGCGCGACCGCTTTTAA 11669 29 100.0 32 ............................. CAATGTTTCATGCTACGCAAGAGACCAGAACG 11730 29 100.0 32 ............................. TGGTGGAGTGCCGAACCGCTACCGTTTCAAAG 11791 29 100.0 32 ............................. TCATGGCGTCATTCGGTACTGATATGCCAATG 11852 29 100.0 32 ............................. TCGTTTGTAGCCGAAAACCGGCTGGCGCTGAT 11913 29 100.0 32 ............................. TAATGAATCGCCTTTCTAAAATGAAAGACGAC 11974 29 100.0 32 ............................. GCATCGAACCGCTTATCCGTCTGTACCCACTC 12035 29 100.0 32 ............................. CTTTCATTGCGCAGGGTATGCAGTCGGTTTCC 12096 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 12157 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 12218 29 100.0 32 ............................. AATGGGATGTTCTCGATAATGGCGACGACGAA 12279 29 100.0 32 ............................. CGGTCATTTTAAAGAATCCCGTTAAACAACAC 12340 29 100.0 32 ............................. GACATTTCAGTTTTGAGCATGAACCTGATTCA 12401 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGTTGTTTAGTTCCT 12462 29 100.0 32 ............................. AAAACCGTACAACAGACAAAATATAAATATTG 12523 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 12584 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 12645 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 12706 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 12767 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 12828 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 12889 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 12950 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 13011 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 13072 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 13133 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 13194 29 100.0 32 ............................. GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 13255 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 13316 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 31 29 98.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATTGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTCCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTGATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGTGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGGAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 30025-31703 **** Predicted by CRISPRDetect 2.4 *** >NZ_SIIV01000007.1 Salmonella enterica subsp. enterica serovar Hadar strain 3139 3139_7_length_240524_cov_27.2787, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 30025 29 100.0 32 ............................. CGACGCTTCCATCGTCTGGCATTCCTGTTCGT 30086 29 100.0 32 ............................. CCCGCGTATTAACAACGACGAGCAGGGCGTGC 30147 29 100.0 32 ............................. GTTGCGCAGCCATTGAGCTGCAAACGGATCAA 30208 29 100.0 32 ............................. CGCCCCCCGCATACAGCGAGAGACGGGCCATG 30269 29 100.0 32 ............................. CGCCGGGCGCGGGAGTCCCGGGCGATCCTCCC 30330 29 100.0 32 ............................. GCCCGAAATCAACTTGCAACATTTCAGTTGGC 30391 29 100.0 32 ............................. CATATGATTGACGACAATGAATTTTTTTTCAA 30452 29 100.0 32 ............................. ATAGTTCATCTCTGTTCTCCAGCGGTTTCTAT 30513 29 100.0 32 ............................. ACGGCATTATCACGGCTATTTCTCTGGAAATG 30574 29 100.0 32 ............................. GACAGGACTTACGACCGGCTGGACTACGCATC 30635 29 100.0 32 ............................. CCACAGCCGCCGCGACAATAAATTAACTCACT 30696 29 100.0 32 ............................. AATGATGAGGGGCTGGCAACGTTTAGCGCCAC 30757 29 100.0 32 ............................. CTGGCCACTCAACAGGGAAATATCGCGTGCGC 30818 29 96.6 32 A............................ CCCATCAAGATAAACATCATAGCGAGCACCTG 30879 29 100.0 32 ............................. TTTGAAATCGCTATTCTTATTGCTGTAGCAGT 30940 29 100.0 32 ............................. CGTTAACTAAAACGAACAAAACAGGGAAATCA 31001 29 100.0 33 ............................. GCCGTGCGTCAGATCACCCCAAACGCTTTCTTT 31063 29 100.0 33 ............................. GCATTAGATTGCGTTGACGGTCACGTTCTTATC 31125 29 100.0 32 ............................. CGCCTCACTGATATTCTGCGGCGAGCTGAAAA 31186 29 100.0 32 ............................. CCGGAAAACTATCTCTATCGCAGGCTGGATAT 31247 29 100.0 32 ............................. TAAGTTACGCCAGTGCGGGCGTGTTGCTCATC 31308 29 100.0 32 ............................. GAGACGCCAGATGAATTCTGCGGGACAAGAGA 31369 29 100.0 32 ............................. AACGCAGGAGAACCAGCCGCCGGTCATCCTGC 31430 29 100.0 32 ............................. GTCTGACCAGTGGCGTGGGGGGATTGCAATTT 31491 29 100.0 32 ............................. CGTGGCTGGAGCAATGAACAGATTAAAGGGGT 31552 29 100.0 32 ............................. AAGCCATTGACGCAACGGAAAACGCCAATGCT 31613 29 96.6 32 .................A........... GTATGATTTGGACATAGCTAATGATGTAAAGT 31674 29 100.0 0 ............................. | A [31701] ========== ====== ====== ====== ============================= ================================= ================== 28 29 99.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCACAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAAGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTATAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGA # Right flank : GTTTCAACAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCTGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //