Array 1 49-975 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYJD01000049.1 Salmonella enterica strain BCW_5837 NODE_49_length_26986_cov_3.39616, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 49 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 110 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 171 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 232 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 294 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 397 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 458 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 519 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 580 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 641 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 702 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 763 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 824 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 885 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 946 29 96.6 0 A............................ | A [972] ========== ====== ====== ====== ============================= ========================================================================== ================== 15 29 99.5 35 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CAGCGGGGATAAACCGTGGATTATCTGTATTTTACGGAAGTGGGCGCGG # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.03 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:-0.19, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [38.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0.27 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 990-45 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYJD01000026.1 Salmonella enterica strain BCW_5837 NODE_26_length_63485_cov_3.51628, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 989 29 96.6 32 ............................T CCCACCGCGCTGATTAACGACGGACTGTTACA 928 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 867 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 806 29 100.0 32 ............................. CAACCAGGCTGGATCGTAACTCCTATCCCCTC 745 29 100.0 32 ............................. AAAATGCAGGTGGGGTAACGAATGCGAGATTG 684 29 100.0 32 ............................. CCATTATTCAACCCTCCAGGCTCGCGCCGGCT 623 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 561 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 500 29 100.0 32 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGA 439 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 378 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 317 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 256 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 195 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 134 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 73 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 16 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GACGCCCCGAATGTGTTTGCCTCGCCCGCTGCCGTGTTCCCCGCG # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [21.7-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 18614-17121 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYJD01000026.1 Salmonella enterica strain BCW_5837 NODE_26_length_63485_cov_3.51628, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 18613 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 18552 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 18491 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 18430 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 18369 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 18308 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 18247 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 18186 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 18125 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 18064 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 18003 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 17942 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 17881 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 17820 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 17759 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 17698 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 17636 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 17575 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 17514 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 17453 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 17392 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 17331 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 17270 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 17209 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 17148 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 25 29 98.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //