Array 1 1066556-1063341 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP027405.1 Moraxella catarrhalis strain FDAARGOS_304 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 1066555 28 100.0 32 ............................ AAATTCTGCCCCGTTCTCGCTGTTTCGGTTGT 1066495 28 100.0 32 ............................ GACCAGCAAAAGCGTGGCAACTTTTAGAGCAG 1066435 28 100.0 32 ............................ AAGGTGAGATAATGATAAGAGTTGATAAGTGC 1066375 28 100.0 32 ............................ TTTGACAATCATCGTATGTGGCTCAGGGGCAA 1066315 28 100.0 33 ............................ CACCAAAACCTTGACACGGTCAGGATTTAGCAC 1066254 28 100.0 33 ............................ ATTTTGATTTTTGAAGCATTGAGCGAATCTGAG 1066193 28 100.0 32 ............................ AAACAAGTCGGTGAGATTATTAAGCCATTATT 1066133 28 100.0 32 ............................ ATAGTTTCCGCCACAAAGCAACCGCCATACCT 1066073 28 100.0 32 ............................ ATCATAGTTAATGACTTCTTGCACACCGTTAC 1066013 28 100.0 32 ............................ AATTGGCGTACGCAGTGATTGGTCAAGATGGC 1065953 28 100.0 32 ............................ GCACACACCTGACAGCCAACACTCAATCAATC 1065893 28 100.0 32 ............................ TAAAAGCTCATAGTTAAGCTGAGTTGCGTGAA 1065833 28 100.0 32 ............................ TGTTGAAAAAATCTTTAGTACGCAGGATAGAT 1065773 28 100.0 32 ............................ AACTTACTGAGCTTTCGACTGTTCTGATGCGT 1065713 28 100.0 33 ............................ ATGGCAGTATTATGAAACGGGCAAACTTATCAT 1065652 28 100.0 32 ............................ GCACGAAATACACGCATTACCATGTTCGCTTG 1065592 28 96.4 32 ...........T................ AACTAGGAGAAATCTCATGGCAAAAGTTGTAG 1065532 28 100.0 32 ............................ TTGATGTACTAAAGTCGTGTTAATAACATAAT 1065472 28 100.0 32 ............................ TTACCTGATGATACCATTTCCAATTTAACTTC 1065412 28 100.0 32 ............................ AAAATGCTTATTAAAAAGCGCACACAAATCCT 1065352 28 100.0 32 ............................ ATTGACCTTGTTGCCAAACTCATTGAAAAACA 1065292 28 100.0 32 ............................ TTTTCCGTCGCTCTTAGAATTTGGATTTCAGT 1065232 28 100.0 32 ............................ AATTATATTACAGTTGTGAACAGTCGAGAAAT 1065172 28 100.0 32 ............................ AGAGCTGACCGCCCATTGGGTTTTTAGCACAT 1065112 28 100.0 32 ............................ TAAAGGTGTTGGCAATGTTACTTATCATAAAT 1065052 28 100.0 32 ............................ ATAGACGCTTTTTCAACTCGCAAACAAGAAAT 1064992 28 100.0 32 ............................ TTGCTTTGTTGTTAACGCTCGGTTTGTCGTTG 1064932 28 100.0 32 ............................ AGTCGAAAGCTCAGTAAGCGGTAATACTTCAA 1064872 28 100.0 32 ............................ CAGCTGGCAGGCAAAGCAAGCACAGCGTCAGT 1064812 28 100.0 33 ............................ TGTTGATGCTCCTATGTCGTATAGCACCCCGTC 1064751 28 100.0 33 ............................ ATTTTTCTCAGAAGGCGGCCGCCTAGTTTTAAA 1064690 28 100.0 32 ............................ AAACAAGTCGATAAGATTATTGAACCACTATT 1064630 28 100.0 32 ............................ AATCAAATATCTGCTGATGAGATAAAACAAAC 1064570 28 96.4 32 ...........T................ CACCCAAAGACATTTCAATTCAGTTACTTAGA 1064510 28 100.0 33 ............................ ACTTACTGAGCTTTCAACAGTATTAATCCGTCT 1064449 28 100.0 33 ............................ CTATTTACCCACCTTTCGTGAGAAGCCTATCGG 1064388 28 100.0 32 ............................ CAAGATTTATGCAAGAGATGATGGCGAGATGG 1064328 28 100.0 32 ............................ ATCGGTCGGTCATGGCGGTAAGCTAATTTTGG 1064268 28 100.0 33 ............................ CATGTTCTCAGTGATAACACGCCCAACCACAAT 1064207 28 100.0 32 ............................ AATATCAATATCATGTACAGTTTTCATTAAAT 1064147 28 100.0 32 ............................ TAGGCAATGAGCCTGAAGTCAAAACATTCACC 1064087 28 100.0 32 ............................ ATAATGAACAAATGAATATTATTCCGTTTGTT 1064027 28 100.0 32 ............................ CCTAATTCAATCGATTCAAACCCAAAAATATT 1063967 28 100.0 32 ............................ ACTGTAGATTATCAGGAAGACTGGGTAATGTT 1063907 28 100.0 32 ............................ AATCATACTTGAGCAATACGAAAACAAGAAAA 1063847 28 100.0 32 ............................ TAATAGAACCATCGGTGAGCGGATTAATCAAC 1063787 28 100.0 32 ............................ ACTTGATTTAGTAGCTAAGCTTGATGTGTCAA 1063727 28 100.0 32 ............................ GCCTTGGTGTTGTCAGTTTTTGAGCAGAACGA 1063667 28 100.0 31 ............................ AAAAACCGTTGTGGATAAAATCGCTCCTTTA 1063608 28 100.0 32 ............................ GAAAACATGGGCTTTTTATCGCCGTGCGGACT 1063548 28 100.0 32 ............................ GAAAACATGGGCTTTTTATCGCCGTGCGGACT 1063488 28 100.0 32 ............................ ATAATTAACAGTTGCACAACCAATCTTAAAGA 1063428 28 100.0 32 ............................ ATTGACTGAATTTACCGCAGTTTCAATCGTTG 1063368 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 54 28 99.9 32 CTTCACGACCGCACAGGTCGCTTAGAAA # Left flank : TGCCTGTGCCAAGTAAAATGACCGTCGTGTTGGCGATCGGAATATTATAATAGTGGTTTTGGTATTTCGTTTCGGTCAGGTATAAGATACGCCCATCTTTTTGCATGACTCGGCAATGCTCAAGATAAAATAAATTCGCCCGTTTGGAGTGTAAAATTGCTTTCAAATCGGTCGGTTTGAGCGTATTCATAATAATACAAATCCATGTTTAATGATTCAATTTTATCCTAACAATTTTCAACATCATTTAATATGATTTTATTGGATTATAAACTAAAAATAAATTTATACCAATCATTTTTTAATTGTATTTAGCGATTAAAATGTTTTAAGATAACCCAACCAGAAGATGGAAAAATAACTGATTGACCCTTTATTTTTTTACTATTTAAAAACTTGAATATTTTCAATAAGTTATAACATGAAGATTTTTGATTGGGTTTTTGACAAATTTTATCATAATGACTTGTTATTTCTTATTATTTTGGTTTATACTAACT # Right flank : TTTTGTTCTATGGCTACGCTGATTATTTAAAATTTTTGTGCCAATCCCTTGAAAATTTTATCCTTAACCATTATGAAGATGGGGAATTTATATTAACTTTTTTGGGGCAATTTATGACCGAGCAAACCACCGAACAAACCACTATGGAAGAGATTATGGCTGAGACGACAACCGAGCAAGTCGAAGCACTTCATAGCCAAATCCAAGCGCTAGAAAATGAAGTCAAAGAAGCCAAAGAGACTGCCGCGCGTGCCAATGCCGAAAGCTATAATGCCCAACGCCGTATGGAACAAGAAACCGATAAAGCCAAAAAATTTGCACTACAAAGGTTTGCCAAAGAGCTTTTGGAGGTGGTTGACAACCTAGAGCGTGCCATTAAAGATGCTGAAGAGACAGGTGCAGATGACGCATCACTTAAAGGCATTCGCCTAACACATAAAGTACTGCTTAGCATCCTTGAGAAAAATGGCGTCGTGGCCGTGGGTAATGTCGGTGATACA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACGACCGCACAGGTCGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTTCACGACCGCACAGGTCGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.10,-7.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [71.7-81.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,5.51 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //