Array 1 140373-142314 **** Predicted by CRISPRDetect 2.4 *** >NZ_QRMJ01000001.1 Collinsella sp. AM09-41 AM09-41.Scaf1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 140373 36 97.2 30 ................G................... CAACCTCGCGACGCTCCTTATCGGCAATCA 140439 36 94.4 30 ................G..................T GCTCTAGGTCGGTAGTACAGTCCTTAGTAA 140505 36 97.2 30 ................G................... CAACAGTCCGCATTGCATCAGCGGACTAAA 140571 36 97.2 30 ................G................... CGACAACAGATATTCAGCATTCATCTTGCC 140637 36 97.2 29 ................G................... CGGCCTCTGGACGCCATGTGCGCATGAGC 140702 36 100.0 29 .................................... GCGAGCTGGGTATATCACTACCAGAGGTA 140767 36 100.0 30 .................................... GAGGTATCAGGCAGGCGGTCGGCAACTGTG 140833 36 100.0 30 .................................... GGTATACCTATAGGCGCAACCCCCGAAACC 140899 36 100.0 29 .................................... AGATTGCCAAGCCTAACCACGCCGACATG 140964 36 100.0 29 .................................... CCGTGTAAATGGCTGGTTGCCTATGTTGC 141029 36 100.0 30 .................................... CTGCTTCTTATTACGACGCTCCTCTTCCAT 141095 36 100.0 29 .................................... GTATCTCCTGTTCTATCGATTGACGGATA 141160 36 100.0 30 .................................... CAATAGCTACGAATTAGTTAGCTATCGCAC 141226 36 100.0 29 .................................... TTTGACGATGAAAGCGGCAACGTACACGC 141291 36 100.0 30 .................................... CGTTGCATCGCATGAGACAAAAGCAGGGCG 141357 36 100.0 30 .................................... CCATGTTCCAGAACGACCTGATCGAGCTCG 141423 36 100.0 30 .................................... GTACCGTGTTGCATCCACTTAGGATGTCTG 141489 36 100.0 30 .................................... AGCACCGTATCACGCCTATACTCGTTGCAA 141555 36 100.0 30 .................................... GCAGGCCACAGCCGAGAACCTGACGCTAGC 141621 36 100.0 30 .................................... GACAATCGAGGGCCGTACGTACAGCTACGG 141687 36 100.0 30 .................................... TCCACCGCCTGAACACCCAGCGCACTATGT 141753 36 100.0 29 .................................... AGCATCATCCAGCACGACCTCCTGCTCGA 141818 36 100.0 30 .................................... CGCATTGTCGCGTCCCCTTCCGGCGTGTCG 141884 36 100.0 30 .................................... TCATCCCAACAACAGCACGAACGATAAGCC 141950 36 100.0 29 .................................... TGAACCCGGACACTAAGAATGAGAAGGCT 142015 36 100.0 30 .................................... TCGTACAGAGTCAAGTCGAAGCCGAAGCTA 142081 36 100.0 30 .................................... GCCGGCGCCGATGCGGACGACGTGCTGCGC 142147 36 100.0 30 .................................... AGGGTGGGGTGTTTGAATGGCGAAGATAGA 142213 36 100.0 30 .................................... TAGTTCTTTCAATTCTTCGTCAGTGTAGTA 142279 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 30 36 99.4 30 GTTTGATTACCAGTTAAATCGACACTGCTCCAAAAC # Left flank : GCCGTTCCACCGTTTATTTACATCTGCCATCACGGGCATCGCCCGTGCGGGCTCGAGTCCCGCCGCCCCGACCAAAACGGGATCATCCCCGCGCGTGCGGGGAACAGGATTGTTTGCGCTCCACATGTCTTGACGGATTGGTAGGGCGCTTTTCTATGGGCAGAAGATCTGGTTATCGCTACATGATTGAGTTAAGAACCCTCACGAATTCCTCTGCCTGGGAGCGACTGCTCAGCCTATAGCCGTAGCCCGTCCGCAGCCTGTTGTTCAGAATCACCTGCTTGCCCTTGATCCTATAGACACCGGTGACGTCATTCAGGTAGGTCACCTCTATATGCTTGCCGAAGAAGCGGTTCTTCTTGAGCGTGGTAATTCGATTCGGGTAGATACAGATCTCCTTGAATACACCGGCACCCTTATCTCTGAACAGCAGCGTGTCGTTGTCCATTTCTATTCCTCCTTGTTGACGTTGGTTAGATTGCGGTCCGAACTGTCATATT # Right flank : CCATTGGAACAAATTCCCTACTGCGACGGGACGTTCAATCTAACCGGTCAGTTCTTTCAATGCTCTAAAAACTGCAGGTCAACCGTTAGTTTATGTTCATGTCCGTAAGCCATGGTATCTTTTTTATTCTCCAGGAGCAACAGGCTCAACTTAAGAAAAAACACGTGGTCATAGAGCGTTTGCAGCTCATTTTCCGTCAAAAATGTTTTGAGATTTACAAATACGATTGTCTTTCTGCAGCCAGCGTCAAGAGCAAATGAAAGGAAATTCAGCAGATTATCAAGGAACGATTTATCTTCTTGAGGCGCTGCACCAAATCCTAAAAACTTGAGGTAGCGCTTCATATCCCATTCTAAACCAAACCCCAAATCGGCATTAAAGCCAAGGTTCAATCCGCCCAAACGCAGCCTTATTGCTCGTTCAGCCTCTTCCACTTGCATGCGCAGGTCTTCGTCTTCTAGAAACTCACGCTCAACCTTCTTGGTGATTGCGGTCATAAA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGATTACCAGTTAAATCGACACTGCTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: F [matched GTTGGATTACCAGTCAGAACGACACTGCTCCAAAAC with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.80,-2.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //