Array 1 158118-156460 **** Predicted by CRISPRDetect 2.4 *** >NZ_JHAS01000034.1 Salmonella enterica subsp. enterica serovar Heidelberg strain CVM N17 contig_34, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 158117 29 100.0 32 ............................. GGGAAAAATCAATAAAATCAATGATAAGCAGT 158056 29 100.0 32 ............................. GCTGGGTAGTGGAGTAATCATTATGTGTGGTG 157995 29 100.0 32 ............................. CAGTGAGATGCCGCCAATTTGTCAAATAAAAT 157934 29 100.0 32 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGA 157873 29 100.0 32 ............................. CCTTTAATCGCCTCTTATCGCCTGGATTGGTT 157812 29 100.0 32 ............................. TTAAATCCATATACGGGCCTTGCGGGTTTGCC 157751 29 100.0 32 ............................. GCGGCTCTGTGTTGGGCGATGGCTCCGGTGGT 157690 29 100.0 32 ............................. GCGCGCCAATAATTTTATTGACGATTTCATCA 157629 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 157568 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 157507 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 157446 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 157385 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 157324 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 157263 29 96.6 32 ......T...................... GTTTGCCGTATCTTCGATCATACCGGAACGGT 157202 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 157141 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 157080 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 157019 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 156916 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 156855 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 156794 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 156733 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 156672 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 156611 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 156550 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 156489 29 96.6 0 A............................ | A [156462] ========== ====== ====== ====== ============================= ========================================================================== ================== 27 29 99.5 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.13 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:-0.09, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 7418-6292 **** Predicted by CRISPRDetect 2.4 *** >NZ_JHAS01000005.1 Salmonella enterica subsp. enterica serovar Heidelberg strain CVM N17 contig_5, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 7417 29 100.0 32 ............................. TTCCAGAACCGTTTGACTTACTGTGGCCATTA 7356 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 7295 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 7234 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 7173 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 7112 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 7051 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 6990 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 6929 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 6868 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 6807 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 6746 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 6685 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 6624 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 6563 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 6502 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 6441 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 6380 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 6319 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================ ================== 19 29 98.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTAGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //