Array 1 106739-105244 **** Predicted by CRISPRDetect 2.4 *** >NZ_NLAZ01000084.1 Pseudomonas aeruginosa strain Env_58 contig-44, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 106738 29 100.0 32 ............................. GCCATTCGGAGAGCAACCAGCACCCTCAGTGG 106677 29 100.0 32 ............................. TGGTAGACAGAGAGTCCAAGCGGTATTCGATC 106616 29 100.0 32 ............................. GTTGTCTTGCCCATAGCTGGTCGGCCAGCAAC 106555 29 100.0 32 ............................. CACGCCAAACTCACCCAGGCTCAATTAGCTCA 106494 29 100.0 32 ............................. CAAGTGACCTGCGCGGTCTGATCGCCCGCCTG 106433 29 100.0 33 ............................. TGATCCAGCGTGCCGCTGCTGACCCTGCGTGCG 106371 29 100.0 32 ............................. AGGAACAACGCCCGCCAGCCTGCGACCATTCC 106310 29 100.0 32 ............................. CCGCCACGTCTGCCTGCAAATCTTCATCAGCC 106249 29 100.0 32 ............................. GTAGGCGCGCACGCCTTCCTGCACGTCCTGGA 106188 29 100.0 32 ............................. GATCAGTGTCTGTTGACACTACCTCGACCCTT 106127 29 100.0 32 ............................. CTTCCATCAGTTGCTCGTTGGAGTACTTGCCG 106066 29 100.0 32 ............................. ATCACGTTTCCGACCGGGGGAAGCTGTCCAGT 106005 29 100.0 32 ............................. TCGGCCTGTACGACGTTGACGGCCAGTTGCTC 105944 29 100.0 32 ............................. CGGCTCATTGCGTTCGGGTGGACCGTCGAACA 105883 29 100.0 33 ............................. GCGCTGGGTAACCTACGCGACAACAGCGAGTTC 105821 29 100.0 32 ............................. AGTCTTCGTTTGCTGAGATCAAGGCGGCGATC 105760 29 96.6 32 ..............T.............. GAGTTCGAAAACGGCCATCACACATTCCTCCG 105699 29 100.0 32 ............................. GTCAAGTACGCGAACCTCACGACCGGCGAGGT 105638 29 100.0 32 ............................. GCACTCCAGGGCGAACTGGACGGTATACGGCG 105577 29 96.6 32 ............C................ GTAGTCCAGTGGCATCGACAGTTCGGCCAGGT 105516 29 100.0 32 ............................. CCAGCGGCCTTGCACTTTGCCAGAGAGTTGTT 105455 29 100.0 32 ............................. GCGGCACGCCTGGACGTGCTCCAGGACATCCG 105394 29 100.0 32 ............................. TTCTCGTTCTACAACAGCACGAACGGCGGGGC 105333 29 96.6 32 ...........A................. CAGGTGATCTGCGAGCTGCCGGCGTAGCCGAA 105272 29 96.6 0 ...........A................. | ========== ====== ====== ====== ============================= ================================= ================== 25 29 99.5 32 GTGTTCCCCACGTGCGTGGGGATGAACCG # Left flank : TGACCCGCATCATTCCCACCATCGAAGAGGTACTGGCCGCCGGCGGCGTGGAACCTCCCAGCGCACCGCCCGAGTCGGTGCCGCCAGCCATTCCCAACCCGGAGGGAATCGGCGACCTCGGTCACAGGACGCAAGGGTGAGCTTCCTGGCCGTGGTGGTGGAAAACGTCCCGCCGCGCTTGCGCGGACGTCTGGCAATCTGGCTGCTGGAAGTCCGCGCGGGCGTCTATATCGGCGATGTATCGCGGCGTACCCGGGAAATGATCTGGCAGCAGCTGAGCGAGGGCTACGAGGAGGGCAACGTGGTAATGGCCTGGGCCGCCGCCAACGAATCCGGCTACGAGTTCCAGACCCTGGGCGTTAACCGTCGACATCCAGTGTTGTTCGACGGGCTGCAATTGGTGGCATTCCAGCCTCTGGATCGGACCACGGAATAGAGGATGAGGCGGTAGATTTTTCGAGGTGTTTTTTCTTCTTTAAAAACAATGCTGTACGGTAAGT # Right flank : TGGAAGTACGCTCGCGCAGCGAGGATGCGATATATGCACGGGGCGAGCCGTTCACTTGAAAAGCCGACATTCCTGGCTGTCCTGTATTTCCCCTTTGGCATGGATAGAGCAGTCCCATAGGGCGAACGACGCCACCGGCGTCATTCGCCATGGCCGGGTCAACCGGAACGTCGAGCGGCTACCAGGCGCTGCTGCAGGCGCGTCAGGAAGGCCACTTCGAAGGCGGTCTTCTGCATCGGTGTGGGCAGGCTGTCGCGGCCGAAGGCGAAGGCGGTCCAGAGCTGGCCTTCGATCTGGTCGGCAAGCCAGTTCTAGGCCTGGCGGACGCCCTTGTCGATGGCGGGCTGGGCGGGAACCGGCCAGAGCAGGGAGAGACCGGGTTGCCGGTCGGCGGGGGGAATCTCGACCATCAGGTCCTTGTAGCGTTCGATGATTGCGTCGACGTGGGTCTTTTCCTTTTCATCCTTCGTCATGCTGGGTACTCCGTTTCTGAGAGTCAC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCACGTGCGTGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCACGTGCGTGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.60,-11.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [41.7-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 116674-115912 **** Predicted by CRISPRDetect 2.4 *** >NZ_NLAZ01000084.1 Pseudomonas aeruginosa strain Env_58 contig-44, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 116673 29 96.6 33 ............................A GCAAAAATAACTGTGCATATTTCTGCTCAATAC 116611 29 100.0 32 ............................. AACGCAGCACGTACCGTCCCCGTTTCAACGTC 116550 29 100.0 32 ............................. TATGCCTTCGGTATGAAACCCAAGAAGGGCGA 116489 29 100.0 32 ............................. AATCGCAAGCGCATGGTGACCGGTTATCGTGA 116428 29 100.0 32 ............................. CTGTAGGTGGTGACATCGTCGTACGGCGCGGA 116367 29 100.0 32 ............................. GTACTGCTCCCGAGCCTGCTGCCAACGGTAGT 116306 29 100.0 32 ............................. TATGCTTTCATAACGGCGTGTCTTCAGGAGAA 116245 29 100.0 32 ............................. CCGAAGCGCCGCAAAGTCGTGTTCAAAAGCCC 116184 29 100.0 32 ............................. GCGGCAGCCTCCCTGATCGCGTAGAAAACGCC 116123 29 100.0 32 ............................. CCGAGATGTGGCGCCGAAACGAGCGCGAGCGC 116062 29 100.0 32 ............................. TCATCGATCGTGGCGGCTGCACTGGCTGCCTG 116001 29 89.7 32 ..............C..........G.T. GTATCGACATCGATGGTGACCAGGCTGGTCCG 115940 28 79.3 0 A..........A..C.....-..A....T | C [115931] ========== ====== ====== ====== ============================= ================================= ================== 13 29 97.4 32 GTGTTCCCCACGGGTGTGGGGATGAACCG # Left flank : GGCATCGTTGTACAGGGCGACGAATTCCGCGCCCCAGAACAGCACGATCTGCGCCTTGGCCGGCAGCAGCGTGGCCATCGTCGTCTTCAGGCTCGCCGACCAGGCGTCCGGCGGGCCGAGGGGCGAACTGGCCGCGTCGAGGCTGAGCAACAGTTTCCCGACCGCTCCTCCGTTGGCCAGGAAGGCCGGTGGATGGTCGAGGGTGTTCGGGTCCGGTTCGATGGTGAAAGGCTGTGCCATGTCTGCGGAGTCTTGCTCGGTTCCGGTTGAGGTGGTGGGTCGTATGGAATATAGGAGGGCGGTGGGTGCGCTTGCGTTCAATCAGCTTGGGGGACCGCGGGATCCCGATGCGGGTAGGTTTCGAATGGTCCCGAGGGAGCTGCCGGATTAGGCTGTGGGATGAGTACGGCCCTCATTTCCAGGAGCGGCGCGAGGGCCGCTTGGCCCGGTGGAATTTTGCTGTTGTTTTTCTTTTTTTAAAACAATGGGATACGGTAAGG # Right flank : GTCTACGCTCCTGCGGTTCGCCCCACCGCGCGGTATTTCCCACGGTGGGGCGAACCGCGCGGCACTACGACCAGTGGCGTGATCACCAGTGTCAGCCGCCAGTTGCCGGAGACGCGGATCGCCCACCGTCCGGCAAGATCCTCTTTCAGGGCATGGAGTTTCCAACCAACCTAGTTCACGTCGCTGGGGATGCAGGCTTCGCTCAGCACGAATAACTGACGGCGCAGGCATTGGGCGGGGGTTGCCTGGATACCTTGCCCTTACCGGTCTCGAAGAAGGCTTCCAGCCCCCCTGTGGCGGAAGGAAATAGATTGTGAACAGGCGGCAAGTGAAGGTTGTTAGTGAGTTAGCGGAATGTCCGACGTTCGCTGTTGCACCATGGAGTTCCTGCTAATTTGGACAGGGTGGTCGGTCCGGTCCATATCCCTCCTGCGCTCCTTCGCTTGCTAAACGGGGGTGAACAGGCGCATCCCTCGCTGGCTGCTCCTTGACGAGCGTCA # Questionable array : NO Score: 6.13 # Score Detail : 1:0, 2:3, 3:0, 4:0.87, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCACGGGTGTGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCACGGGTGTGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.60,-11.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [28.3-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //